Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31127 * 126.55364 * 2 1 4 4 C 1.34492 * 105.61350 * 180.12210 * 3 2 1 5 5 C 1.50703 * 126.28600 * 179.90629 * 4 3 2 6 6 C 1.53004 * 109.46807 * 269.70902 * 5 4 3 7 7 N 1.46901 * 109.46916 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99870 * 180.02562 * 7 6 5 9 9 H 1.09003 * 109.47224 * 325.00460 * 8 7 6 10 10 C 1.53002 * 109.47102 * 85.00132 * 8 7 6 11 11 C 1.52996 * 109.46819 * 205.00022 * 8 7 6 12 12 C 1.50704 * 109.47341 * 65.00385 * 11 8 7 13 13 H 1.08005 * 119.99728 * 359.97438 * 12 11 8 14 14 C 1.37872 * 119.99972 * 179.97438 * 12 11 8 15 15 N 1.31512 * 120.00363 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99722 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47018 * 359.97438 * 16 14 12 18 18 H 1.48490 * 109.47306 * 120.00511 * 16 14 12 19 19 H 1.48502 * 109.47079 * 240.00240 * 16 14 12 20 20 N 1.29948 * 107.42654 * 359.63953 * 4 3 2 21 21 O 1.21300 * 110.24689 * 0.22843 * 20 4 3 22 22 H 1.08995 * 109.47054 * 180.24984 * 1 2 3 23 23 H 1.08998 * 109.46699 * 300.25517 * 1 2 3 24 24 H 1.09000 * 109.47009 * 60.25412 * 1 2 3 25 25 H 1.08995 * 109.47327 * 149.71590 * 5 4 3 26 26 H 1.08996 * 109.47062 * 29.70447 * 5 4 3 27 27 H 1.09004 * 109.46889 * 60.00274 * 6 5 4 28 28 H 1.08995 * 109.47384 * 299.99914 * 6 5 4 29 29 H 1.00901 * 111.00067 * 303.95263 * 7 6 5 30 30 H 1.08999 * 109.47105 * 180.02562 * 10 8 7 31 31 H 1.08996 * 109.46950 * 299.99914 * 10 8 7 32 32 H 1.09003 * 109.46813 * 60.00077 * 10 8 7 33 33 H 1.09006 * 109.47142 * 184.99909 * 11 8 7 34 34 H 1.08991 * 109.47453 * 304.99990 * 11 8 7 35 35 H 0.96996 * 120.00111 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0533 0.0000 4 6 3.5441 0.5727 -0.0028 5 6 4.8112 1.3885 -0.0059 6 6 5.2406 1.6580 -1.4495 7 7 6.4755 2.4537 -1.4526 8 6 6.9184 2.7330 -2.8251 9 1 6.6866 1.8796 -3.4625 10 6 6.1951 3.9741 -3.3518 11 6 8.4281 2.9806 -2.8333 12 6 9.1465 1.7182 -2.4318 13 1 8.5825 0.8283 -2.1941 14 6 10.5236 1.6992 -2.3679 15 7 11.2103 2.7829 -2.6569 16 14 11.4140 0.1345 -1.8695 17 1 10.4204 -0.9347 -1.5960 18 1 12.3139 -0.2949 -2.9698 19 1 12.2154 0.3894 -0.6456 20 7 3.4645 -0.7243 0.0035 21 8 2.3029 -1.0736 0.0052 22 1 -0.3633 -1.0276 0.0045 23 1 -0.3633 0.5178 0.8877 24 1 -0.3633 0.5099 -0.8923 25 1 5.5983 0.8392 0.5107 26 1 4.6347 2.3358 0.5035 27 1 4.4536 2.2073 -1.9661 28 1 5.4172 0.7107 -1.9589 29 1 6.3559 3.3089 -0.9305 30 1 6.5233 4.1811 -4.3704 31 1 5.1195 3.7977 -3.3459 32 1 6.4269 4.8275 -2.7145 33 1 8.7427 3.2747 -3.8348 34 1 8.6697 3.7760 -2.1284 35 1 12.1792 2.7694 -2.6123 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = 27.742376 kcal Electronic energy + Delta-G solvation = -16558.503268 eV Core-core repulsion = 13786.370578 eV Total energy + Delta-G solvation = -2772.132691 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.65692 -38.70193 -37.15310 -35.34601 -34.60546 -33.05940 -30.02973 -29.53547 -28.94897 -25.41845 -24.81169 -23.77938 -22.16604 -21.35807 -19.23828 -18.46402 -18.37543 -16.78297 -16.57080 -16.13266 -15.80870 -15.17829 -14.88989 -14.40824 -14.17779 -14.04175 -13.87512 -13.50076 -13.44774 -13.20848 -12.98704 -12.88611 -12.57290 -12.43672 -12.35735 -12.16861 -11.99805 -11.90233 -11.21990 -11.09756 -10.84091 -10.49713 -9.10697 -8.10671 -6.15296 0.17718 1.14322 1.39789 1.40925 1.54080 1.96991 2.46714 2.58189 3.01740 3.22334 3.50223 3.94149 4.00534 4.18592 4.22535 4.42405 4.45273 4.55302 4.57871 4.64309 4.66197 4.87548 4.89849 4.99915 5.02145 5.16611 5.21391 5.25433 5.49849 5.65513 5.89681 6.26331 6.43251 6.68580 6.98710 7.18867 7.50367 9.01649 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030581 B = 0.004720 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.371955 B = 5931.171962 C = 6657.161627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.184 3.816 3 N -0.508 5.508 4 C 0.170 3.830 5 C -0.022 4.022 6 C 0.082 3.918 7 N -0.678 5.678 8 C 0.098 3.902 9 H 0.054 0.946 10 C -0.169 4.169 11 C 0.038 3.962 12 C -0.500 4.500 13 H 0.053 0.947 14 C -0.005 4.005 15 N -0.939 5.939 16 Si 0.956 3.044 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.281 1.281 20 N -0.411 5.411 21 O 0.073 5.927 22 H 0.122 0.878 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.343 0.657 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.058 0.942 33 H -0.006 1.006 34 H -0.005 1.005 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.784 -3.782 5.358 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.035 4.035 3 N -0.243 5.243 4 C -0.103 4.103 5 C -0.062 4.062 6 C -0.048 4.048 7 N -0.309 5.309 8 C -0.011 4.011 9 H 0.072 0.928 10 C -0.228 4.228 11 C 0.001 3.999 12 C -0.539 4.539 13 H 0.071 0.929 14 C -0.201 4.201 15 N -0.582 5.582 16 Si 0.782 3.218 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.207 1.207 20 N -0.120 5.120 21 O 0.014 5.986 22 H 0.140 0.860 23 H 0.139 0.861 24 H 0.136 0.864 25 H 0.110 0.890 26 H 0.127 0.873 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.162 0.838 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.418 -4.371 5.435 23.478 hybrid contribution 0.329 0.016 -0.154 0.364 sum -22.089 -4.355 5.281 23.125 Atomic orbital electron populations 1.20774 0.76098 1.07738 1.07018 1.29993 1.00647 0.79664 0.93236 1.71886 1.00174 1.30065 1.22131 1.25922 0.95843 0.88240 1.00283 1.19875 0.88471 0.99219 0.98587 1.21658 0.90797 0.97705 0.94684 1.60325 1.30931 1.24759 1.14896 1.21471 0.95597 0.95946 0.88109 0.92780 1.22399 1.00013 0.98485 1.01855 1.18994 0.90807 0.95599 0.94541 1.21516 0.91278 0.98040 1.43046 0.92900 1.25838 0.98838 0.99198 0.96240 1.70088 1.06725 1.29571 1.51780 0.85534 0.78395 0.80098 0.77788 1.19409 1.20604 1.20678 1.74683 0.98475 1.16385 1.22433 1.85262 1.11116 1.36339 1.65837 0.85996 0.86142 0.86394 0.89031 0.87267 0.94631 0.93116 0.83844 0.92348 0.91976 0.92327 0.98770 0.98643 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 71.24 0.75 0.44 16 2 C 0.18 3.42 8.51 88.38 0.75 4.17 16 3 N -0.51 -12.82 11.55 -303.21 -3.50 -16.32 16 4 C 0.17 4.93 7.47 138.46 1.03 5.96 16 5 C -0.02 -0.64 6.10 29.85 0.18 -0.46 16 6 C 0.08 2.64 5.47 86.30 0.47 3.11 16 7 N -0.68 -25.37 5.97 -491.55 -2.93 -28.31 16 8 C 0.10 4.06 2.53 44.91 0.11 4.17 16 9 H 0.05 2.32 7.80 -2.39 -0.02 2.30 16 10 C -0.17 -5.56 9.16 71.98 0.66 -4.90 16 11 C 0.04 2.02 4.65 29.85 0.14 2.16 16 12 C -0.50 -29.28 8.84 25.60 0.23 -29.05 16 13 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 14 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 15 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 16 Si 0.96 46.75 29.54 68.60 2.03 48.78 16 17 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 N -0.41 -12.40 12.16 -60.33 -0.73 -13.14 16 21 O 0.07 1.74 11.31 74.87 0.85 2.59 16 22 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 23 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.04 1.07 7.43 -2.39 -0.02 1.05 16 28 H 0.05 1.82 8.06 -2.39 -0.02 1.81 16 29 H 0.34 11.53 8.47 -89.69 -0.76 10.77 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.75 7.45 -2.39 -0.02 1.73 16 32 H 0.06 1.86 8.13 -2.39 -0.02 1.84 16 33 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 34 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -73.18 302.36 1.10 -72.08 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.32 Total: 6.92 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.79 Total: -14.24 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -6.88 Total: -116.12 kcal Atomic # 8 Polarization: 1.74 SS G_CDS: 0.85 Total: 2.59 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -73.18 1.10 -72.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.819 kcal (2) G-P(sol) polarization free energy of solvation -73.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds