Wall clock time and date at job start Mon Mar 30 2020 04:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46826 * 2 1 4 4 C 1.53005 * 109.47095 * 240.00606 * 2 1 3 5 5 C 1.50697 * 109.46688 * 174.99898 * 4 2 1 6 6 H 1.07997 * 120.00191 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99809 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00206 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00037 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47498 * 89.99946 * 9 7 5 11 11 H 1.48505 * 109.46711 * 209.99681 * 9 7 5 12 12 H 1.48496 * 109.47183 * 329.99552 * 9 7 5 13 13 N 1.46896 * 109.47030 * 120.00352 * 2 1 3 14 14 C 1.46891 * 111.00179 * 58.95740 * 13 2 1 15 15 C 1.46899 * 110.99916 * 295.00070 * 13 2 1 16 16 H 1.09000 * 109.47162 * 60.00343 * 15 13 2 17 17 C 1.53002 * 109.47071 * 300.00116 * 15 13 2 18 18 C 1.50706 * 109.47101 * 180.02562 * 15 13 2 19 19 N 1.33316 * 126.55062 * 45.02343 * 18 15 13 20 20 N 1.28997 * 107.35186 * 180.02562 * 19 18 15 21 21 N 1.28773 * 108.72943 * 0.02562 * 20 19 18 22 22 H 0.96998 * 125.45108 * 180.02562 * 21 20 19 23 23 N 1.28894 * 109.10260 * 359.72926 * 21 20 19 24 24 H 1.08998 * 109.47475 * 299.99583 * 1 2 3 25 25 H 1.09007 * 109.47100 * 60.00041 * 1 2 3 26 26 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46506 * 294.99562 * 4 2 1 28 28 H 1.09000 * 109.47121 * 54.99781 * 4 2 1 29 29 H 0.97000 * 120.00498 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47074 * 296.04184 * 14 13 2 31 31 H 1.08995 * 109.47404 * 56.04306 * 14 13 2 32 32 H 1.09000 * 109.47544 * 176.04758 * 14 13 2 33 33 H 1.09004 * 109.47059 * 299.99680 * 17 15 13 34 34 H 1.08992 * 109.47060 * 60.00164 * 17 15 13 35 35 H 1.09004 * 109.46930 * 180.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6147 -1.3127 6 1 4.0789 -0.0853 -0.5396 7 6 4.2304 -1.1932 -2.3578 8 7 3.5766 -1.8383 -3.2991 9 14 6.0922 -1.0619 -2.4361 10 1 6.7001 -2.2146 -1.7241 11 1 6.5297 -1.0701 -3.8552 12 1 6.5267 0.2032 -1.7914 13 7 2.0196 -0.6926 1.1994 14 6 1.5284 -2.0761 1.2458 15 6 1.6486 0.0390 2.4180 16 1 0.5631 0.1175 2.4784 17 6 2.2598 1.4411 2.3772 18 6 2.1673 -0.6996 3.6249 19 7 3.3827 -1.2278 3.7707 20 7 3.4286 -1.7703 4.9401 21 7 2.2920 -1.5987 5.5205 22 1 2.0617 -1.9100 6.4099 23 7 1.5112 -0.9416 4.7331 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7714 -1.2057 28 1 1.6054 -0.2616 -2.1370 29 1 4.0610 -2.2456 -4.0342 30 1 0.4420 -2.0731 1.3346 31 1 1.8168 -2.5950 0.3317 32 1 1.9617 -2.5869 2.1057 33 1 3.3454 1.3626 2.3168 34 1 1.8851 1.9755 1.5043 35 1 1.9849 1.9837 3.2817 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695906481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:02 Heat of formation + Delta-G solvation = 131.568913 kcal Electronic energy + Delta-G solvation = -17720.325953 eV Core-core repulsion = 14984.988270 eV Total energy + Delta-G solvation = -2735.337683 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.31438 -38.43688 -34.33514 -33.67028 -32.48319 -30.94861 -29.80353 -27.30205 -24.84499 -24.54810 -24.35262 -22.98375 -20.99673 -19.10506 -18.17625 -16.99911 -16.13535 -15.79956 -15.29005 -14.32643 -14.16560 -13.71841 -13.43433 -12.71039 -12.23327 -12.14162 -12.04150 -11.79910 -11.63111 -11.50564 -11.25796 -11.05299 -10.95345 -10.86366 -10.60980 -10.55258 -10.33324 -10.12792 -9.82221 -9.13193 -8.92559 -8.18962 -7.52064 -5.82759 -3.80018 1.25882 2.30348 2.40754 3.46915 3.52487 3.57463 3.95802 4.30160 4.63746 4.82658 5.27934 5.42113 5.55231 5.63193 5.71448 5.75304 5.84573 5.89122 5.96743 6.00658 6.11142 6.17186 6.44749 6.51824 6.51886 6.64762 6.74585 6.99342 7.52373 7.64227 7.89084 7.99854 8.18564 8.43525 8.63126 9.26671 9.82131 11.29219 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.007399 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.669886 B = 3783.243677 C = 4343.747970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.085 3.915 3 H 0.080 0.920 4 C 0.029 3.971 5 C -0.488 4.488 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.274 1.274 13 N -0.497 5.497 14 C 0.027 3.973 15 C 0.171 3.829 16 H 0.064 0.936 17 C -0.142 4.142 18 C 0.194 3.806 19 N -0.240 5.240 20 N -0.064 5.064 21 N -0.242 5.242 22 H 0.469 0.531 23 N -0.312 5.312 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.256 0.744 30 H 0.016 0.984 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.449 2.746 15.276 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.023 4.023 3 H 0.098 0.902 4 C -0.008 4.008 5 C -0.527 4.527 6 H 0.082 0.918 7 C -0.149 4.149 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.199 1.199 13 N -0.222 5.222 14 C -0.121 4.121 15 C 0.059 3.941 16 H 0.082 0.918 17 C -0.200 4.200 18 C -0.089 4.089 19 N -0.113 5.113 20 N -0.060 5.060 21 N -0.086 5.086 22 H 0.322 0.678 23 N -0.164 5.164 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.449 2.337 15.398 16.500 hybrid contribution -0.355 -0.126 0.345 0.511 sum -5.804 2.212 15.743 16.924 Atomic orbital electron populations 1.22557 0.99759 1.01523 1.00893 1.22056 0.90024 0.99044 0.91157 0.90236 1.19244 0.96551 0.95418 0.89610 1.21196 0.91671 1.32900 1.06923 0.91840 1.24992 0.97989 0.95892 0.95991 1.69965 1.35188 1.37076 1.12469 0.86629 0.86510 0.78506 0.76544 1.20897 1.21788 1.19937 1.62146 1.59046 1.01458 0.99519 1.22381 0.96054 0.90497 1.03138 1.19895 0.97087 0.92508 0.84574 0.91846 1.21865 1.03060 0.93273 1.01804 1.25670 0.88444 0.99685 0.95089 1.76075 1.18727 1.10209 1.06301 1.79030 1.06603 1.17317 1.03014 1.47765 1.07406 1.36033 1.17415 0.67783 1.74667 1.22809 1.15168 1.03713 0.93985 0.92205 0.92795 0.96134 0.96124 0.93405 0.96567 0.89123 0.93611 0.90618 0.90556 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 8.50 37.16 0.32 -2.77 16 2 C 0.08 1.65 2.03 -67.71 -0.14 1.52 16 3 H 0.08 1.54 6.05 -51.93 -0.31 1.23 16 4 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 5 C -0.49 -13.62 8.84 -34.44 -0.30 -13.92 16 6 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.35 13.29 55.43 0.74 -26.62 16 9 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 10 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 13 N -0.50 -9.46 4.33 -228.30 -0.99 -10.45 16 14 C 0.03 0.51 8.45 60.06 0.51 1.02 16 15 C 0.17 2.72 2.33 -68.86 -0.16 2.56 16 16 H 0.06 0.94 6.44 -51.93 -0.33 0.60 16 17 C -0.14 -2.04 8.95 37.16 0.33 -1.71 16 18 C 0.19 3.11 5.59 -156.62 -0.88 2.23 16 19 N -0.24 -4.23 12.21 32.45 0.40 -3.83 16 20 N -0.06 -0.93 13.48 60.35 0.81 -0.12 16 21 N -0.24 -2.67 7.91 60.34 0.48 -2.20 16 22 H 0.47 2.70 8.96 -340.53 -3.05 -0.35 16 23 N -0.31 -4.23 12.36 32.47 0.40 -3.83 16 24 H 0.04 0.59 6.52 -51.93 -0.34 0.26 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.89 6.48 -51.93 -0.34 0.56 16 27 H 0.02 0.54 6.09 -51.93 -0.32 0.23 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.02 0.27 6.51 -51.93 -0.34 -0.07 16 31 H 0.09 1.93 6.03 -51.93 -0.31 1.61 16 32 H 0.05 0.85 6.75 -51.93 -0.35 0.50 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.05 6.30 -51.93 -0.33 0.72 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 283.61 15.07 4.27 4.27 Total: -1.00 -32.41 283.61 -6.70 -39.11 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -7.25 Total: -4.68 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.54 Total: -9.11 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 1.84 Total: -47.04 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.41 -6.70 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.682 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds