Wall clock time and date at job start Mon Mar 30 2020 04:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46826 * 2 1 4 4 C 1.53005 * 109.47095 * 240.00606 * 2 1 3 5 5 C 1.50697 * 109.46688 * 174.99898 * 4 2 1 6 6 H 1.07997 * 120.00191 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99809 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00206 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00037 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47498 * 89.99946 * 9 7 5 11 11 H 1.48505 * 109.46711 * 209.99681 * 9 7 5 12 12 H 1.48496 * 109.47183 * 329.99552 * 9 7 5 13 13 N 1.46896 * 109.47030 * 120.00352 * 2 1 3 14 14 C 1.46891 * 111.00179 * 58.95740 * 13 2 1 15 15 C 1.46899 * 110.99916 * 295.00070 * 13 2 1 16 16 H 1.09000 * 109.47162 * 60.00343 * 15 13 2 17 17 C 1.53002 * 109.47071 * 300.00116 * 15 13 2 18 18 C 1.50706 * 109.47101 * 180.02562 * 15 13 2 19 19 N 1.33316 * 126.55062 * 45.02343 * 18 15 13 20 20 N 1.28997 * 107.35186 * 180.02562 * 19 18 15 21 21 N 1.28773 * 108.72943 * 0.02562 * 20 19 18 22 22 H 0.96998 * 125.45108 * 180.02562 * 21 20 19 23 23 N 1.28894 * 109.10260 * 359.72926 * 21 20 19 24 24 H 1.08998 * 109.47475 * 299.99583 * 1 2 3 25 25 H 1.09007 * 109.47100 * 60.00041 * 1 2 3 26 26 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46506 * 294.99562 * 4 2 1 28 28 H 1.09000 * 109.47121 * 54.99781 * 4 2 1 29 29 H 0.97000 * 120.00498 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47074 * 296.04184 * 14 13 2 31 31 H 1.08995 * 109.47404 * 56.04306 * 14 13 2 32 32 H 1.09000 * 109.47544 * 176.04758 * 14 13 2 33 33 H 1.09004 * 109.47059 * 299.99680 * 17 15 13 34 34 H 1.08992 * 109.47060 * 60.00164 * 17 15 13 35 35 H 1.09004 * 109.46930 * 180.02562 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6147 -1.3127 6 1 4.0789 -0.0853 -0.5396 7 6 4.2304 -1.1932 -2.3578 8 7 3.5766 -1.8383 -3.2991 9 14 6.0922 -1.0619 -2.4361 10 1 6.7001 -2.2146 -1.7241 11 1 6.5297 -1.0701 -3.8552 12 1 6.5267 0.2032 -1.7914 13 7 2.0196 -0.6926 1.1994 14 6 1.5284 -2.0761 1.2458 15 6 1.6486 0.0390 2.4180 16 1 0.5631 0.1175 2.4784 17 6 2.2598 1.4411 2.3772 18 6 2.1673 -0.6996 3.6249 19 7 3.3827 -1.2278 3.7707 20 7 3.4286 -1.7703 4.9401 21 7 2.2920 -1.5987 5.5205 22 1 2.0617 -1.9100 6.4099 23 7 1.5112 -0.9416 4.7331 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7714 -1.2057 28 1 1.6054 -0.2616 -2.1370 29 1 4.0610 -2.2456 -4.0342 30 1 0.4420 -2.0731 1.3346 31 1 1.8168 -2.5950 0.3317 32 1 1.9617 -2.5869 2.1057 33 1 3.3454 1.3626 2.3168 34 1 1.8851 1.9755 1.5043 35 1 1.9849 1.9837 3.2817 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695906481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:02 Heat of formation + Delta-G solvation = 106.920037 kcal Electronic energy + Delta-G solvation = -17721.394808 eV Core-core repulsion = 14984.988270 eV Total energy + Delta-G solvation = -2736.406539 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.144 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.42361 -39.87378 -35.72651 -34.97461 -34.28339 -32.34193 -31.22565 -29.15198 -26.30146 -25.77816 -25.47232 -24.88686 -22.32746 -20.37826 -19.50571 -18.31448 -18.10133 -17.16146 -16.77926 -16.20831 -15.60898 -15.03753 -14.75146 -14.38147 -13.88080 -13.55604 -13.37198 -13.21197 -13.14110 -12.87168 -12.85303 -12.62074 -12.38815 -12.21900 -12.19551 -12.17547 -11.94965 -11.59255 -11.27428 -11.03477 -10.90677 -10.40879 -8.93916 -8.04677 -6.07491 0.17920 1.10599 1.44276 1.46696 1.54621 1.56472 2.52260 2.77263 3.03448 3.30869 3.60448 4.06495 4.22618 4.24974 4.42526 4.45909 4.50667 4.60302 4.67055 4.68005 4.82810 4.95119 5.06248 5.16153 5.22990 5.30157 5.43001 5.56833 5.72310 5.78744 5.96411 6.31983 6.35684 6.55004 7.07110 7.31060 7.58083 9.07243 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.007399 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.669886 B = 3783.243677 C = 4343.747970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.094 3.906 3 H 0.083 0.917 4 C 0.033 3.967 5 C -0.493 4.493 6 H 0.059 0.941 7 C -0.004 4.004 8 N -0.941 5.941 9 Si 0.949 3.051 10 H -0.284 1.284 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.520 5.520 14 C 0.039 3.961 15 C 0.173 3.827 16 H 0.084 0.916 17 C -0.137 4.137 18 C 0.182 3.818 19 N -0.285 5.285 20 N -0.071 5.071 21 N -0.207 5.207 22 H 0.491 0.509 23 N -0.300 5.300 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.049 0.951 27 H -0.002 1.002 28 H -0.002 1.002 29 H 0.257 0.743 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 3.641 17.240 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.013 4.013 3 H 0.101 0.899 4 C -0.004 4.004 5 C -0.531 4.531 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.776 3.224 10 H -0.210 1.210 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.245 5.245 14 C -0.109 4.109 15 C 0.062 3.938 16 H 0.101 0.899 17 C -0.196 4.196 18 C -0.101 4.101 19 N -0.157 5.157 20 N -0.066 5.066 21 N -0.057 5.057 22 H 0.350 0.650 23 N -0.153 5.153 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.045 3.233 17.395 18.697 hybrid contribution -0.212 -0.435 -0.144 0.505 sum -6.256 2.798 17.250 18.562 Atomic orbital electron populations 1.22433 0.96953 1.01802 1.02603 1.21748 0.92195 0.98146 0.89234 0.89868 1.19112 0.95055 0.94575 0.91668 1.21525 0.93406 1.31909 1.06286 0.92303 1.25770 1.02313 0.95928 0.95954 1.70082 1.36790 1.38285 1.13173 0.85677 0.81457 0.78591 0.76667 1.21001 1.21239 1.18967 1.61970 1.60165 1.01686 1.00655 1.22174 0.97191 0.90389 1.01144 1.19949 0.98208 0.92589 0.83044 0.89893 1.21849 1.01525 0.92824 1.03378 1.25641 0.88333 1.00360 0.95781 1.76054 1.20091 1.11836 1.07721 1.78962 1.07548 1.17468 1.02609 1.47821 1.06184 1.33892 1.17830 0.65037 1.74632 1.22520 1.14968 1.03224 0.90887 0.91855 0.93217 0.98361 0.98386 0.93449 0.94537 0.92620 0.93751 0.92823 0.89989 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.50 8.50 71.98 0.61 -4.89 16 2 C 0.09 3.63 2.03 44.92 0.09 3.72 16 3 H 0.08 3.13 6.05 -2.39 -0.01 3.12 16 4 C 0.03 1.68 4.27 29.85 0.13 1.81 16 5 C -0.49 -27.94 8.84 25.60 0.23 -27.72 16 6 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.08 13.29 21.45 0.28 -57.80 16 9 Si 0.95 46.63 29.54 68.60 2.03 48.65 16 10 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 13 N -0.52 -19.38 4.33 -876.20 -3.79 -23.17 16 14 C 0.04 1.47 8.45 127.69 1.08 2.55 16 15 C 0.17 5.12 2.33 44.17 0.10 5.22 16 16 H 0.08 2.14 6.44 -2.39 -0.02 2.12 16 17 C -0.14 -3.66 8.95 71.98 0.64 -3.01 16 18 C 0.18 5.45 5.59 138.55 0.77 6.23 16 19 N -0.29 -9.73 12.21 -51.26 -0.63 -10.35 16 20 N -0.07 -1.94 13.48 37.02 0.50 -1.44 16 21 N -0.21 -4.02 7.91 37.00 0.29 -3.72 16 22 H 0.49 4.08 8.96 -347.68 -3.12 0.96 16 23 N -0.30 -7.28 12.36 -51.20 -0.63 -7.91 16 24 H 0.07 1.80 6.52 -2.39 -0.02 1.78 16 25 H 0.06 1.89 8.14 -2.38 -0.02 1.88 16 26 H 0.05 1.56 6.48 -2.39 -0.02 1.55 16 27 H 0.00 -0.10 6.09 -2.39 -0.01 -0.12 16 28 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 30 H 0.04 1.18 6.51 -2.39 -0.02 1.17 16 31 H 0.06 2.44 6.03 -2.39 -0.01 2.43 16 32 H 0.04 1.63 6.75 -2.39 -0.02 1.62 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 2.06 6.30 -2.39 -0.02 2.04 16 35 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -70.43 283.61 0.17 -70.26 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -2.00 Total: 1.34 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.12 Total: -15.86 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -3.97 Total: -104.39 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -70.43 0.17 -70.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.182 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds