Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48498 * 109.47357 * 270.00263 * 3 2 1 5 5 H 1.48503 * 109.46918 * 30.00222 * 3 2 1 6 6 H 1.48493 * 109.47085 * 149.99898 * 3 2 1 7 7 C 1.38947 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00127 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99953 * 179.97438 * 7 2 1 10 10 C 1.34771 * 120.00124 * 179.97438 * 9 7 2 11 11 O 1.21301 * 120.00141 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00172 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47243 * 180.02562 * 12 10 9 14 14 C 1.48865 * 110.99653 * 283.87893 * 13 12 10 15 15 H 1.09002 * 112.44325 * 45.84401 * 14 13 12 16 16 C 1.54696 * 104.00298 * 283.95721 * 14 13 12 17 17 C 1.54337 * 104.71920 * 334.06279 * 16 14 13 18 18 C 1.48866 * 110.99921 * 170.00127 * 13 12 10 19 19 H 1.09002 * 112.44121 * 314.16144 * 18 13 12 20 20 C 1.53779 * 107.53330 * 190.00320 * 18 13 12 21 21 N 1.48176 * 108.32645 * 296.93548 * 20 18 13 22 22 C 1.46957 * 112.11243 * 54.68526 * 21 20 18 23 23 H 0.97007 * 119.99908 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99782 * 0.02562 * 9 7 2 25 25 H 1.09001 * 109.47241 * 60.00489 * 12 10 9 26 26 H 1.09001 * 109.47003 * 300.00482 * 12 10 9 27 27 H 1.09000 * 110.38932 * 215.25707 * 16 14 13 28 28 H 1.08994 * 110.39032 * 92.86764 * 16 14 13 29 29 H 1.09001 * 110.38285 * 241.19021 * 17 16 14 30 30 H 1.08994 * 110.48338 * 118.86063 * 17 16 14 31 31 H 1.08996 * 109.56004 * 56.66414 * 20 18 13 32 32 H 1.09009 * 109.55030 * 176.97152 * 20 18 13 33 33 H 1.00897 * 110.84314 * 179.33928 * 21 20 18 34 34 H 1.09005 * 109.54669 * 184.95468 * 22 21 20 35 35 H 1.08991 * 109.64199 * 64.69700 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0465 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0014 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4211 -0.0011 12 6 5.5607 -2.3707 -0.0011 13 7 6.0503 -3.7556 -0.0017 14 6 5.9137 -4.3703 1.3473 15 1 4.9388 -4.1783 1.7953 16 6 7.0707 -3.7454 2.1622 17 6 8.1339 -3.3691 1.1086 18 6 7.5185 -3.8023 -0.2430 19 1 7.8257 -3.1565 -1.0656 20 6 7.9026 -5.2724 -0.4798 21 7 7.6076 -6.0358 0.7555 22 6 6.2131 -5.8703 1.1884 23 1 -0.4850 0.8401 0.0004 24 1 3.8649 -0.3634 -0.0007 25 1 5.9240 -1.8569 0.8890 26 1 5.9240 -1.8568 -0.8910 27 1 7.4749 -4.4723 2.8666 28 1 6.7267 -2.8554 2.6890 29 1 9.0612 -3.9109 1.2947 30 1 8.3148 -2.2943 1.1163 31 1 7.3194 -5.6730 -1.3089 32 1 8.9652 -5.3387 -0.7136 33 1 7.8364 -7.0114 0.6379 34 1 6.0652 -6.3749 2.1432 35 1 5.5444 -6.2987 0.4419 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723858265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = -9.524180 kcal Electronic energy + Delta-G solvation = -17758.891670 eV Core-core repulsion = 14985.142980 eV Total energy + Delta-G solvation = -2773.748690 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47995 -38.01305 -34.32952 -33.78561 -31.64327 -31.15294 -30.85975 -27.36631 -24.82252 -24.32680 -23.05544 -20.36356 -19.32163 -18.75192 -18.20502 -16.89051 -15.97520 -15.27340 -14.87757 -14.58368 -14.19566 -13.92114 -13.77276 -13.42338 -13.11516 -12.68962 -12.46311 -12.38549 -12.05937 -11.76957 -11.25796 -11.15048 -10.82757 -10.62466 -10.56157 -10.53430 -10.23873 -9.94751 -9.52207 -8.61995 -8.37665 -8.14379 -8.07966 -6.28146 -3.79206 3.04477 3.08704 3.16544 3.79103 3.96435 4.12830 4.22270 4.71503 4.83060 4.94564 5.09824 5.24917 5.26493 5.35457 5.42579 5.57169 5.62767 5.75943 5.77756 5.86653 5.97019 5.99344 6.01897 6.05850 6.15712 6.28039 6.44624 6.92848 7.14088 7.16145 7.41414 7.62573 8.18084 8.64413 8.98984 9.46381 9.88687 10.85210 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.045204 B = 0.006103 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.264007 B = 4587.037690 C = 4850.065521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.455 3.545 11 O -0.559 6.559 12 C 0.032 3.968 13 N -0.481 5.481 14 C 0.068 3.932 15 H 0.106 0.894 16 C -0.138 4.138 17 C -0.133 4.133 18 C 0.054 3.946 19 H 0.094 0.906 20 C 0.071 3.929 21 N -0.691 5.691 22 C 0.072 3.928 23 H 0.273 0.727 24 H 0.369 0.631 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.338 0.662 34 H 0.074 0.926 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.758 -5.301 1.753 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.241 3.759 11 O -0.440 6.440 12 C -0.100 4.100 13 N -0.203 5.203 14 C -0.041 4.041 15 H 0.124 0.876 16 C -0.177 4.177 17 C -0.172 4.172 18 C -0.056 4.056 19 H 0.112 0.888 20 C -0.058 4.058 21 N -0.323 5.323 22 C -0.057 4.057 23 H 0.083 0.917 24 H 0.202 0.798 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.154 0.846 34 H 0.092 0.908 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.016 -5.688 1.722 18.024 hybrid contribution 0.533 1.468 -0.060 1.563 sum 17.548 -4.219 1.662 18.125 Atomic orbital electron populations 1.69627 1.05619 1.27402 1.49735 1.25024 0.95476 0.97913 0.97779 0.86678 0.79761 0.84120 0.78870 1.19643 1.20222 1.19557 1.19423 0.79272 0.96579 1.47890 0.86340 1.42218 1.07481 1.06140 1.67571 1.19664 0.88068 0.84498 0.83680 1.90554 1.69415 1.30895 1.53168 1.21996 0.95533 0.90796 1.01682 1.65318 1.12058 1.15809 1.27127 1.23204 0.98679 0.93837 0.88411 0.87638 1.22776 0.96079 1.00250 0.98580 1.22736 0.99604 0.99708 0.95201 1.23286 0.88401 0.96437 0.97455 0.88818 1.22233 0.99676 0.93036 0.90905 1.60588 1.23154 1.14658 1.33858 1.21998 0.87958 0.95828 0.99920 0.91683 0.79799 0.92827 0.89526 0.90605 0.92681 0.90703 0.92793 0.94063 0.90663 0.84559 0.90754 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.64 27.74 -169.99 -4.71 14.93 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 7 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 8 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 9 N -0.59 -14.44 5.09 -10.96 -0.06 -14.49 16 10 C 0.46 10.60 7.47 -10.99 -0.08 10.51 16 11 O -0.56 -15.25 14.99 5.54 0.08 -15.17 16 12 C 0.03 0.56 5.13 -4.98 -0.03 0.53 16 13 N -0.48 -7.99 4.65 -213.93 -0.99 -8.98 16 14 C 0.07 1.07 3.33 -65.32 -0.22 0.85 16 15 H 0.11 1.98 7.10 -51.93 -0.37 1.61 16 16 C -0.14 -1.83 5.39 -25.14 -0.14 -1.96 16 17 C -0.13 -1.59 5.56 -25.14 -0.14 -1.73 16 18 C 0.05 0.69 3.70 -65.32 -0.24 0.45 16 19 H 0.09 1.09 8.02 -51.93 -0.42 0.67 16 20 C 0.07 0.81 6.29 -2.71 -0.02 0.80 16 21 N -0.69 -7.89 5.82 -111.87 -0.65 -8.54 16 22 C 0.07 0.99 6.18 -3.39 -0.02 0.97 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 25 H 0.05 0.86 6.73 -51.93 -0.35 0.51 16 26 H 0.09 1.34 7.99 -51.93 -0.42 0.93 16 27 H 0.08 0.95 7.81 -51.93 -0.41 0.55 16 28 H 0.05 0.74 7.80 -51.93 -0.40 0.34 16 29 H 0.07 0.84 7.80 -51.93 -0.40 0.43 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.34 3.17 8.90 -39.29 -0.35 2.82 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 275.99 15.07 4.16 4.16 Total: -1.00 -32.32 275.99 -7.55 -39.86 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.02 Total: 10.95 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.13 Total: 2.61 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.93 Total: -57.34 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.32 -7.55 -39.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723858265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.338 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds