Wall clock time and date at job start Mon Mar 30 2020 03:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47165 * 2 1 4 4 C 1.50700 * 109.47013 * 120.00366 * 2 1 3 5 5 C 1.39015 * 126.77282 * 300.02245 * 4 2 1 6 6 C 1.41490 * 126.01760 * 0.02562 * 5 4 2 7 7 H 1.08001 * 120.00065 * 3.83001 * 6 5 4 8 8 C 1.39746 * 119.99890 * 184.10320 * 6 5 4 9 9 N 1.30984 * 119.99963 * 353.49098 * 8 6 5 10 10 Si 1.86800 * 119.99793 * 173.49159 * 8 6 5 11 11 H 1.48504 * 109.46943 * 94.98499 * 10 8 6 12 12 H 1.48508 * 109.46708 * 214.97770 * 10 8 6 13 13 H 1.48497 * 109.47215 * 334.97874 * 10 8 6 14 14 N 1.34843 * 107.95824 * 179.75746 * 5 4 2 15 15 N 1.28668 * 109.63556 * 0.24345 * 14 5 4 16 16 N 1.35023 * 126.77354 * 120.20056 * 4 2 1 17 17 C 1.46500 * 126.49151 * 359.97438 * 16 4 2 18 18 H 1.09007 * 109.47250 * 0.31761 * 17 16 4 19 19 C 1.53001 * 109.47075 * 120.31967 * 17 16 4 20 20 C 1.52996 * 109.47301 * 240.32216 * 17 16 4 21 21 O 1.42894 * 109.47687 * 175.00039 * 20 17 16 22 22 H 1.09004 * 109.46830 * 299.99990 * 1 2 3 23 23 H 1.08999 * 109.47237 * 59.99582 * 1 2 3 24 24 H 1.08998 * 109.47011 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46830 * 240.00010 * 2 1 3 26 26 H 1.09003 * 109.46991 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47384 * 300.00328 * 3 2 1 28 28 H 1.09004 * 109.47239 * 60.00260 * 3 2 1 29 29 H 0.96994 * 119.99862 * 179.97438 * 9 8 6 30 30 H 1.08993 * 109.46737 * 60.00072 * 19 17 16 31 31 H 1.08998 * 109.46978 * 180.02562 * 19 17 16 32 32 H 1.08997 * 109.46685 * 299.99914 * 19 17 16 33 33 H 1.09004 * 109.47180 * 295.00045 * 20 17 16 34 34 H 1.09005 * 109.47490 * 54.99941 * 20 17 16 35 35 H 0.96697 * 114.01087 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.7845 -0.3608 2.5528 6 6 1.0069 0.7370 2.9914 7 1 0.4921 1.3560 2.2715 8 6 0.9098 1.0237 4.3557 9 7 1.4311 0.2054 5.2356 10 14 0.0364 2.5739 4.9244 11 1 -1.3762 2.2541 5.2524 12 1 0.7156 3.1102 6.1313 13 1 0.0756 3.5896 3.8418 14 7 2.4106 -1.2555 3.3439 15 7 3.0251 -2.1205 2.6161 16 7 2.8147 -1.8104 1.2659 17 6 3.3391 -2.5442 0.1115 18 1 3.0051 -2.0624 -0.8076 19 6 4.8683 -2.5459 0.1599 20 6 2.8260 -3.9852 0.1472 21 8 3.2410 -4.6682 -1.0374 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.3640 0.4046 6.1825 30 1 5.2021 -3.0277 1.0788 31 1 5.2584 -3.0915 -0.6993 32 1 5.2337 -1.5193 0.1344 33 1 3.2326 -4.4940 1.0212 34 1 1.7374 -3.9821 0.2023 35 1 2.9507 -5.5894 -1.0825 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:53 Heat of formation + Delta-G solvation = 24.315401 kcal Electronic energy + Delta-G solvation = -17791.481971 eV Core-core repulsion = 15019.200676 eV Total energy + Delta-G solvation = -2772.281296 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.14628 -37.21759 -34.85965 -34.30556 -32.90504 -29.52137 -28.59902 -26.44852 -26.19419 -25.06468 -22.43063 -21.68839 -19.58531 -18.59923 -17.52731 -16.70231 -15.51948 -14.86825 -14.73275 -14.64372 -13.73731 -13.47170 -13.39953 -12.87628 -12.47831 -12.25924 -11.96579 -11.58366 -11.45792 -11.43138 -11.13616 -11.11761 -10.84473 -10.69919 -10.51366 -10.22175 -9.98554 -9.78483 -9.61637 -9.24394 -8.78654 -8.43987 -7.35653 -6.34997 -4.12702 2.82196 3.16176 3.21820 3.24512 3.42176 4.14886 4.33817 4.47415 4.97800 5.21549 5.32115 5.52585 5.54459 5.62421 5.73535 5.76788 5.93854 5.96766 6.09099 6.24745 6.26625 6.40469 6.47053 6.55699 6.59597 6.79639 6.98783 7.14848 7.18207 7.44306 7.57360 7.59482 8.17178 8.46303 8.86338 9.11937 10.23546 10.62167 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.007838 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.488761 B = 3571.696944 C = 4060.434480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.010 3.990 3 C -0.143 4.143 4 C -0.105 4.105 5 C 0.158 3.842 6 C -0.450 4.450 7 H 0.087 0.913 8 C 0.073 3.927 9 N -0.776 5.776 10 Si 0.901 3.099 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.264 1.264 14 N -0.229 5.229 15 N -0.134 5.134 16 N -0.373 5.373 17 C 0.167 3.833 18 H 0.095 0.905 19 C -0.151 4.151 20 C 0.072 3.928 21 O -0.573 6.573 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.271 0.729 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 -2.800 -10.255 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.011 4.011 3 C -0.201 4.201 4 C -0.236 4.236 5 C 0.028 3.972 6 C -0.486 4.486 7 H 0.104 0.896 8 C -0.146 4.146 9 N -0.403 5.403 10 Si 0.727 3.273 11 H -0.200 1.200 12 H -0.205 1.205 13 H -0.188 1.188 14 N -0.100 5.100 15 N -0.110 5.110 16 N -0.170 5.170 17 C 0.062 3.938 18 H 0.113 0.887 19 C -0.209 4.209 20 C -0.007 4.007 21 O -0.377 6.377 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.450 -3.269 -9.127 9.802 hybrid contribution -1.088 0.719 -0.293 1.337 sum 0.361 -2.550 -9.420 9.765 Atomic orbital electron populations 1.21858 0.95017 1.01243 1.01972 1.19076 0.95173 0.94763 0.92061 1.21840 1.00348 0.95926 1.01969 1.21440 1.08625 0.96295 0.97216 1.18905 0.97551 0.95445 0.85328 1.18609 1.28011 1.10074 0.91911 0.89554 1.25788 0.94787 0.97094 0.96913 1.70023 1.34822 1.33399 1.02034 0.86422 0.79632 0.82432 0.78858 1.19965 1.20526 1.18802 1.75090 1.08858 1.02200 1.23888 1.81462 1.24209 1.22729 0.82571 1.49455 1.39098 1.21831 1.06633 1.20666 0.94957 0.90884 0.87324 0.88727 1.22024 0.93608 1.02397 1.02862 1.22428 0.98284 0.92734 0.87242 1.86363 1.80166 1.28912 1.42308 0.90424 0.93736 0.93728 0.93028 0.93652 0.93790 0.90385 0.91871 0.91547 0.90993 0.92377 0.92262 0.93317 0.77269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.04 37.16 0.34 -2.16 16 2 C 0.01 0.19 3.05 -91.77 -0.28 -0.09 16 3 C -0.14 -2.52 9.04 37.16 0.34 -2.18 16 4 C -0.10 -2.41 5.80 -80.90 -0.47 -2.88 16 5 C 0.16 4.27 6.60 -85.02 -0.56 3.71 16 6 C -0.45 -11.91 7.67 -37.78 -0.29 -12.20 16 7 H 0.09 2.10 4.68 -52.49 -0.25 1.86 16 8 C 0.07 1.92 5.48 -17.35 -0.10 1.83 16 9 N -0.78 -21.92 11.95 55.54 0.66 -21.26 16 10 Si 0.90 19.42 29.56 -169.99 -5.03 14.40 16 11 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 13 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 14 N -0.23 -6.62 10.58 32.05 0.34 -6.28 16 15 N -0.13 -3.48 13.62 60.35 0.82 -2.66 16 16 N -0.37 -8.27 3.29 -49.74 -0.16 -8.43 16 17 C 0.17 2.89 3.39 -67.93 -0.23 2.66 16 18 H 0.09 1.55 6.41 -51.93 -0.33 1.21 16 19 C -0.15 -2.38 9.36 37.16 0.35 -2.04 16 20 C 0.07 1.10 6.70 37.16 0.25 1.35 16 21 O -0.57 -7.25 13.19 -35.23 -0.46 -7.71 16 22 H 0.08 1.50 5.66 -51.93 -0.29 1.20 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.87 6.46 -51.93 -0.34 0.54 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.52 5.83 -51.93 -0.30 1.22 16 29 H 0.27 7.05 8.30 -40.82 -0.34 6.71 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.38 2.97 9.12 45.56 0.42 3.39 16 LS Contribution 289.06 15.07 4.36 4.36 Total: -1.00 -31.65 289.06 -4.15 -35.80 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.02 Total: 3.79 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.66 Total: -12.00 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 1.66 Total: -38.62 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.46 Total: -7.71 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.65 -4.15 -35.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.115 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds