Wall clock time and date at job start Mon Mar 30 2020 03:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47165 * 2 1 4 4 C 1.50700 * 109.47013 * 120.00366 * 2 1 3 5 5 C 1.39015 * 126.77282 * 300.02245 * 4 2 1 6 6 C 1.41490 * 126.01760 * 0.02562 * 5 4 2 7 7 H 1.08001 * 120.00065 * 3.83001 * 6 5 4 8 8 C 1.39746 * 119.99890 * 184.10320 * 6 5 4 9 9 N 1.30984 * 119.99963 * 353.49098 * 8 6 5 10 10 Si 1.86800 * 119.99793 * 173.49159 * 8 6 5 11 11 H 1.48504 * 109.46943 * 94.98499 * 10 8 6 12 12 H 1.48508 * 109.46708 * 214.97770 * 10 8 6 13 13 H 1.48497 * 109.47215 * 334.97874 * 10 8 6 14 14 N 1.34843 * 107.95824 * 179.75746 * 5 4 2 15 15 N 1.28668 * 109.63556 * 0.24345 * 14 5 4 16 16 N 1.35023 * 126.77354 * 120.20056 * 4 2 1 17 17 C 1.46500 * 126.49151 * 359.97438 * 16 4 2 18 18 H 1.09007 * 109.47250 * 0.31761 * 17 16 4 19 19 C 1.53001 * 109.47075 * 120.31967 * 17 16 4 20 20 C 1.52996 * 109.47301 * 240.32216 * 17 16 4 21 21 O 1.42894 * 109.47687 * 175.00039 * 20 17 16 22 22 H 1.09004 * 109.46830 * 299.99990 * 1 2 3 23 23 H 1.08999 * 109.47237 * 59.99582 * 1 2 3 24 24 H 1.08998 * 109.47011 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46830 * 240.00010 * 2 1 3 26 26 H 1.09003 * 109.46991 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47384 * 300.00328 * 3 2 1 28 28 H 1.09004 * 109.47239 * 60.00260 * 3 2 1 29 29 H 0.96994 * 119.99862 * 179.97438 * 9 8 6 30 30 H 1.08993 * 109.46737 * 60.00072 * 19 17 16 31 31 H 1.08998 * 109.46978 * 180.02562 * 19 17 16 32 32 H 1.08997 * 109.46685 * 299.99914 * 19 17 16 33 33 H 1.09004 * 109.47180 * 295.00045 * 20 17 16 34 34 H 1.09005 * 109.47490 * 54.99941 * 20 17 16 35 35 H 0.96697 * 114.01087 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.7845 -0.3608 2.5528 6 6 1.0069 0.7370 2.9914 7 1 0.4921 1.3560 2.2715 8 6 0.9098 1.0237 4.3557 9 7 1.4311 0.2054 5.2356 10 14 0.0364 2.5739 4.9244 11 1 -1.3762 2.2541 5.2524 12 1 0.7156 3.1102 6.1313 13 1 0.0756 3.5896 3.8418 14 7 2.4106 -1.2555 3.3439 15 7 3.0251 -2.1205 2.6161 16 7 2.8147 -1.8104 1.2659 17 6 3.3391 -2.5442 0.1115 18 1 3.0051 -2.0624 -0.8076 19 6 4.8683 -2.5459 0.1599 20 6 2.8260 -3.9852 0.1472 21 8 3.2410 -4.6682 -1.0374 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.3640 0.4046 6.1825 30 1 5.2021 -3.0277 1.0788 31 1 5.2584 -3.0915 -0.6993 32 1 5.2337 -1.5193 0.1344 33 1 3.2326 -4.4940 1.0212 34 1 1.7374 -3.9821 0.2023 35 1 2.9507 -5.5894 -1.0825 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:53 Heat of formation + Delta-G solvation = 0.409595 kcal Electronic energy + Delta-G solvation = -17792.518605 eV Core-core repulsion = 15019.200676 eV Total energy + Delta-G solvation = -2773.317929 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.99694 -38.43679 -36.43978 -35.86382 -34.67375 -31.19170 -30.47741 -27.83357 -27.48567 -26.94508 -24.08065 -23.35137 -21.36181 -20.20778 -18.99488 -18.27296 -16.96452 -16.70675 -16.22666 -16.08322 -15.30270 -15.08419 -14.86447 -14.53885 -13.79913 -13.66977 -13.40721 -13.23035 -12.92484 -12.89809 -12.81165 -12.74491 -12.37838 -12.18410 -11.95048 -11.89559 -11.44809 -11.43451 -11.12592 -11.04656 -10.65282 -10.28170 -9.29431 -8.26640 -6.11698 1.00930 1.45051 1.46104 1.59449 1.82473 2.35774 2.37895 3.24294 3.57716 3.66162 3.89149 3.95728 4.06473 4.18323 4.42266 4.47427 4.48409 4.63712 4.74445 4.85522 4.90432 4.97460 5.02836 5.09310 5.16250 5.25129 5.31977 5.53332 5.57425 5.58226 5.81683 6.42843 6.50487 6.75148 6.95270 7.15331 8.32218 8.73371 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.007838 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.488761 B = 3571.696944 C = 4060.434480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 C -0.138 4.138 4 C -0.076 4.076 5 C 0.116 3.884 6 C -0.469 4.469 7 H 0.102 0.898 8 C 0.019 3.981 9 N -0.829 5.829 10 Si 0.977 3.023 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.248 1.248 14 N -0.285 5.285 15 N -0.169 5.169 16 N -0.358 5.358 17 C 0.150 3.850 18 H 0.116 0.884 19 C -0.142 4.142 20 C 0.087 3.913 21 O -0.570 6.570 22 H 0.054 0.946 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.270 0.730 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 -2.117 -13.399 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.015 4.015 3 C -0.196 4.196 4 C -0.211 4.211 5 C -0.017 4.017 6 C -0.506 4.506 7 H 0.119 0.881 8 C -0.194 4.194 9 N -0.458 5.458 10 Si 0.799 3.201 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.172 1.172 14 N -0.154 5.154 15 N -0.144 5.144 16 N -0.154 5.154 17 C 0.047 3.953 18 H 0.134 0.866 19 C -0.200 4.200 20 C 0.008 3.992 21 O -0.378 6.378 22 H 0.073 0.927 23 H 0.103 0.897 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.921 -2.660 -12.300 12.618 hybrid contribution -0.851 0.381 0.404 1.016 sum 0.070 -2.280 -11.896 12.113 Atomic orbital electron populations 1.21806 0.93724 1.01254 1.02799 1.19380 0.96191 0.95276 0.90681 1.21792 1.00007 0.95018 1.02781 1.22288 1.05708 0.95233 0.97861 1.19467 0.98939 0.96303 0.86948 1.19004 1.28442 1.10458 0.92661 0.88057 1.26752 0.95430 1.00309 0.96940 1.70197 1.37518 1.35856 1.02218 0.85266 0.78187 0.78287 0.78364 1.19373 1.20755 1.17164 1.75048 1.10856 1.03715 1.25757 1.81347 1.25775 1.23221 0.84013 1.49876 1.37176 1.21270 1.07039 1.21183 0.96049 0.92050 0.85977 0.86649 1.21964 0.92301 1.02372 1.03393 1.22038 0.97626 0.91607 0.87973 1.86304 1.80138 1.30807 1.40523 0.92705 0.89750 0.94179 0.90148 0.94197 0.89785 0.92718 0.92048 0.93124 0.87985 0.92904 0.93338 0.93895 0.74485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.04 71.98 0.65 -3.75 16 2 C 0.01 0.19 3.05 -11.54 -0.04 0.15 16 3 C -0.14 -4.44 9.04 71.98 0.65 -3.79 16 4 C -0.08 -3.46 5.80 42.25 0.24 -3.21 16 5 C 0.12 6.44 6.60 39.67 0.26 6.70 16 6 C -0.47 -25.34 7.67 23.44 0.18 -25.16 16 7 H 0.10 4.94 4.68 -2.91 -0.01 4.93 16 8 C 0.02 1.03 5.48 85.18 0.47 1.49 16 9 N -0.83 -49.14 11.95 21.80 0.26 -48.88 16 10 Si 0.98 40.66 29.56 68.60 2.03 42.69 16 11 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 12 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 13 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 14 N -0.28 -17.22 10.58 -52.52 -0.56 -17.78 16 15 N -0.17 -9.06 13.62 37.02 0.50 -8.55 16 16 N -0.36 -15.73 3.29 -311.27 -1.02 -16.76 16 17 C 0.15 4.90 3.39 44.99 0.15 5.05 16 18 H 0.12 3.32 6.41 -2.38 -0.02 3.30 16 19 C -0.14 -4.23 9.36 71.98 0.67 -3.55 16 20 C 0.09 2.49 6.70 71.98 0.48 2.97 16 21 O -0.57 -12.44 13.19 -148.98 -1.97 -14.41 16 22 H 0.05 2.02 5.66 -2.39 -0.01 2.00 16 23 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 2.33 6.46 -2.39 -0.02 2.32 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 2.03 5.83 -2.39 -0.01 2.02 16 29 H 0.27 14.83 8.30 -92.71 -0.77 14.06 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.10 2.43 7.82 -2.39 -0.02 2.41 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.40 4.89 9.12 -74.06 -0.68 4.22 16 Total: -1.00 -72.29 289.06 3.41 -68.88 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.43 Total: 17.90 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.73 Total: -23.10 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -0.81 Total: -91.97 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.97 Total: -14.41 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -72.29 3.41 -68.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.290 kcal (2) G-P(sol) polarization free energy of solvation -72.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds