Wall clock time and date at job start Mon Mar 30 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47234 * 2 1 4 4 N 1.46504 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.40117 * 126.49030 * 270.02652 * 4 3 2 6 6 N 1.28674 * 108.93144 * 179.97438 * 5 4 3 7 7 C 1.34846 * 109.63417 * 359.72734 * 6 5 4 8 8 C 1.41495 * 126.01977 * 180.27857 * 7 6 5 9 9 H 1.08002 * 119.99622 * 180.19716 * 8 7 6 10 10 C 1.39733 * 119.99978 * 0.18555 * 8 7 6 11 11 N 1.30988 * 120.00275 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00035 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46943 * 90.00353 * 12 10 8 14 14 H 1.48498 * 109.47481 * 210.00575 * 12 10 8 15 15 H 1.48498 * 109.46880 * 330.00427 * 12 10 8 16 16 C 1.35021 * 126.48920 * 90.00168 * 4 3 2 17 17 C 1.50697 * 126.77302 * 0.02562 * 16 4 3 18 18 C 1.52997 * 109.47466 * 89.99922 * 17 16 4 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 16 20 20 C 1.42902 * 114.00186 * 180.02562 * 19 18 17 21 21 H 1.09004 * 109.46967 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46979 * 299.99988 * 1 2 3 23 23 H 1.09001 * 109.47056 * 59.99977 * 1 2 3 24 24 H 1.09006 * 109.47025 * 239.99864 * 2 1 3 25 25 H 1.09000 * 109.47292 * 120.00520 * 2 1 3 26 26 H 1.09006 * 109.47225 * 59.99987 * 3 2 1 27 27 H 1.09000 * 109.47406 * 300.00451 * 3 2 1 28 28 H 0.97005 * 119.99868 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.47120 * 329.99675 * 17 16 4 30 30 H 1.08998 * 109.46862 * 210.00477 * 17 16 4 31 31 H 1.09002 * 109.47153 * 59.99773 * 18 17 16 32 32 H 1.09001 * 109.46832 * 299.99964 * 18 17 16 33 33 H 1.08999 * 109.46857 * 59.99535 * 20 19 18 34 34 H 1.08998 * 109.46946 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.46918 * 299.99649 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3378 1.4421 1.1274 6 7 5.5648 1.4417 0.7398 7 6 5.6142 1.4357 -0.6078 8 6 6.7883 1.4278 -1.3973 9 1 6.7144 1.4267 -2.4748 10 6 8.0434 1.4218 -0.7830 11 7 8.1330 1.4230 0.5238 12 14 9.5935 1.4122 -1.8254 13 1 10.0118 2.8097 -2.1032 14 1 10.6771 0.7071 -1.0947 15 1 9.3238 0.7121 -3.1069 16 6 4.3085 1.4423 -1.0846 17 6 3.8751 1.4427 -2.5279 18 6 3.7289 2.8852 -3.0162 19 8 3.3173 2.8855 -4.3846 20 6 3.1511 4.1911 -4.9413 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 9.0042 1.4184 0.9502 29 1 2.9180 0.9291 -2.6200 30 1 4.6228 0.9286 -3.1318 31 1 4.6859 3.3988 -2.9241 32 1 2.9811 3.3992 -2.4122 33 1 4.0965 4.7312 -4.8896 34 1 2.8385 4.1052 -5.9820 35 1 2.3919 4.7327 -4.3771 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:58 Heat of formation + Delta-G solvation = 24.477527 kcal Electronic energy + Delta-G solvation = -17272.511396 eV Core-core repulsion = 14500.237131 eV Total energy + Delta-G solvation = -2772.274265 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.03938 -37.54045 -35.23859 -33.31136 -32.53388 -30.78545 -28.48835 -26.54663 -25.85608 -24.63792 -22.65183 -21.65066 -20.26563 -18.97275 -17.14939 -16.12473 -15.75362 -15.09682 -14.95155 -14.75031 -14.61477 -14.09489 -13.30969 -13.05964 -12.73998 -12.47204 -12.09514 -11.89961 -11.63704 -11.27506 -11.24350 -11.07764 -10.96224 -10.78717 -10.70789 -10.50168 -10.24901 -9.73040 -9.36572 -9.27817 -8.85982 -8.42540 -7.42118 -6.37123 -4.17034 2.76821 3.16510 3.21498 3.25036 3.61830 4.11634 4.14542 4.33841 5.02627 5.10560 5.35576 5.38549 5.44716 5.47816 5.52865 5.56236 5.68555 5.73019 5.80847 5.85515 5.88417 6.03801 6.11375 6.18591 6.35157 6.39530 6.60532 6.91913 7.14205 7.41894 7.45425 7.52253 8.17169 8.43408 8.82087 9.08478 10.20644 10.59419 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.008717 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.671815 B = 3211.402724 C = 4539.164257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.138 3.862 4 N -0.375 5.375 5 N -0.128 5.128 6 N -0.230 5.230 7 C 0.158 3.842 8 C -0.450 4.450 9 H 0.082 0.918 10 C 0.073 3.927 11 N -0.775 5.775 12 Si 0.906 3.094 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.264 1.264 16 C -0.121 4.121 17 C -0.008 4.008 18 C 0.067 3.933 19 O -0.396 6.396 20 C 0.034 3.966 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.272 0.728 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 1.756 -6.507 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.014 3.986 4 N -0.172 5.172 5 N -0.104 5.104 6 N -0.102 5.102 7 C 0.029 3.971 8 C -0.486 4.486 9 H 0.100 0.900 10 C -0.146 4.146 11 N -0.401 5.401 12 Si 0.731 3.269 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.188 1.188 16 C -0.251 4.251 17 C -0.047 4.047 18 C -0.010 4.010 19 O -0.316 6.316 20 C -0.063 4.063 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.300 1.596 -4.832 11.488 hybrid contribution 0.597 0.334 -1.375 1.535 sum -9.703 1.930 -6.206 11.678 Atomic orbital electron populations 1.21696 0.95158 1.01844 1.01775 1.21922 0.95705 0.96906 1.03312 1.21412 0.77116 0.97296 1.02789 1.49495 1.05479 1.56146 1.06070 1.81480 0.96144 1.24776 1.07987 1.75116 1.07428 1.15464 1.12202 1.18996 0.91040 0.98901 0.88211 1.18564 0.88172 1.48464 0.93357 0.90011 1.25789 1.00352 0.93476 0.94987 1.70022 1.25508 1.35442 1.09127 0.86362 0.81131 0.78838 0.80575 1.19820 1.20495 1.18815 1.21063 0.91431 1.24065 0.88577 1.19364 1.00996 0.94382 0.90004 1.22682 0.98762 0.98905 0.80664 1.87827 1.89247 1.27354 1.27124 1.22665 0.99789 0.85320 0.98561 0.92472 0.92588 0.92636 0.91428 0.91207 0.89951 0.90419 0.91727 0.92414 0.89625 0.92277 0.94408 0.94137 0.90145 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.14 -1.99 6.26 -26.73 -0.17 -2.16 16 3 C 0.14 2.23 6.15 -4.04 -0.02 2.21 16 4 N -0.38 -8.32 3.63 -56.17 -0.20 -8.52 16 5 N -0.13 -3.37 13.74 60.35 0.83 -2.54 16 6 N -0.23 -6.73 10.56 32.05 0.34 -6.40 16 7 C 0.16 4.38 6.72 -85.02 -0.57 3.81 16 8 C -0.45 -12.29 9.11 -37.78 -0.34 -12.63 16 9 H 0.08 2.08 7.29 -52.49 -0.38 1.70 16 10 C 0.07 1.96 5.49 -17.35 -0.10 1.86 16 11 N -0.77 -22.06 11.92 55.54 0.66 -21.40 16 12 Si 0.91 19.70 29.56 -169.99 -5.02 14.68 16 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 16 C -0.12 -2.81 6.37 -80.91 -0.52 -3.33 16 17 C -0.01 -0.15 5.45 -27.89 -0.15 -0.30 16 18 C 0.07 1.17 5.92 37.16 0.22 1.39 16 19 O -0.40 -6.45 10.70 -35.23 -0.38 -6.83 16 20 C 0.03 0.41 11.01 101.05 1.11 1.52 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.12 7.78 -51.93 -0.40 0.71 16 28 H 0.27 7.11 8.30 -40.82 -0.34 6.77 16 29 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 30 H 0.09 1.69 7.55 -51.93 -0.39 1.30 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 302.15 15.07 4.55 4.55 Total: -1.00 -31.89 302.15 -4.76 -36.65 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.37 Total: -1.40 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.17 Total: -8.80 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 1.63 Total: -38.85 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.38 Total: -6.83 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.89 -4.76 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.132 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds