Wall clock time and date at job start Mon Mar 30 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47234 * 2 1 4 4 N 1.46504 * 109.47293 * 179.97438 * 3 2 1 5 5 N 1.40117 * 126.49030 * 270.02652 * 4 3 2 6 6 N 1.28674 * 108.93144 * 179.97438 * 5 4 3 7 7 C 1.34846 * 109.63417 * 359.72734 * 6 5 4 8 8 C 1.41495 * 126.01977 * 180.27857 * 7 6 5 9 9 H 1.08002 * 119.99622 * 180.19716 * 8 7 6 10 10 C 1.39733 * 119.99978 * 0.18555 * 8 7 6 11 11 N 1.30988 * 120.00275 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00035 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46943 * 90.00353 * 12 10 8 14 14 H 1.48498 * 109.47481 * 210.00575 * 12 10 8 15 15 H 1.48498 * 109.46880 * 330.00427 * 12 10 8 16 16 C 1.35021 * 126.48920 * 90.00168 * 4 3 2 17 17 C 1.50697 * 126.77302 * 0.02562 * 16 4 3 18 18 C 1.52997 * 109.47466 * 89.99922 * 17 16 4 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 16 20 20 C 1.42902 * 114.00186 * 180.02562 * 19 18 17 21 21 H 1.09004 * 109.46967 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46979 * 299.99988 * 1 2 3 23 23 H 1.09001 * 109.47056 * 59.99977 * 1 2 3 24 24 H 1.09006 * 109.47025 * 239.99864 * 2 1 3 25 25 H 1.09000 * 109.47292 * 120.00520 * 2 1 3 26 26 H 1.09006 * 109.47225 * 59.99987 * 3 2 1 27 27 H 1.09000 * 109.47406 * 300.00451 * 3 2 1 28 28 H 0.97005 * 119.99868 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.47120 * 329.99675 * 17 16 4 30 30 H 1.08998 * 109.46862 * 210.00477 * 17 16 4 31 31 H 1.09002 * 109.47153 * 59.99773 * 18 17 16 32 32 H 1.09001 * 109.46832 * 299.99964 * 18 17 16 33 33 H 1.08999 * 109.46857 * 59.99535 * 20 19 18 34 34 H 1.08998 * 109.46946 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.46918 * 299.99649 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3378 1.4421 1.1274 6 7 5.5648 1.4417 0.7398 7 6 5.6142 1.4357 -0.6078 8 6 6.7883 1.4278 -1.3973 9 1 6.7144 1.4267 -2.4748 10 6 8.0434 1.4218 -0.7830 11 7 8.1330 1.4230 0.5238 12 14 9.5935 1.4122 -1.8254 13 1 10.0118 2.8097 -2.1032 14 1 10.6771 0.7071 -1.0947 15 1 9.3238 0.7121 -3.1069 16 6 4.3085 1.4423 -1.0846 17 6 3.8751 1.4427 -2.5279 18 6 3.7289 2.8852 -3.0162 19 8 3.3173 2.8855 -4.3846 20 6 3.1511 4.1911 -4.9413 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 9.0042 1.4184 0.9502 29 1 2.9180 0.9291 -2.6200 30 1 4.6228 0.9286 -3.1318 31 1 4.6859 3.3988 -2.9241 32 1 2.9811 3.3992 -2.4122 33 1 4.0965 4.7312 -4.8896 34 1 2.8385 4.1052 -5.9820 35 1 2.3919 4.7327 -4.3771 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:58 Heat of formation + Delta-G solvation = 2.446193 kcal Electronic energy + Delta-G solvation = -17273.466747 eV Core-core repulsion = 14500.237131 eV Total energy + Delta-G solvation = -2773.229616 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.94533 -38.80440 -36.68565 -35.21033 -34.10536 -32.38923 -30.24453 -27.93221 -27.07213 -26.46149 -24.15867 -22.97190 -22.11116 -20.69704 -19.04835 -17.46564 -17.12631 -16.78700 -16.53085 -16.16287 -15.96617 -15.54180 -14.88579 -14.43853 -14.30786 -13.97228 -13.34432 -13.20834 -12.89063 -12.85177 -12.80319 -12.67018 -12.32169 -12.19971 -12.11562 -12.03443 -11.74481 -11.61219 -11.17480 -10.81167 -10.57983 -10.26956 -9.40668 -8.31954 -6.21312 0.92391 1.43721 1.44393 1.58255 1.97248 2.30257 2.33358 2.89653 3.51740 3.78054 3.93706 4.03355 4.16996 4.25792 4.29836 4.41735 4.52309 4.53260 4.57163 4.65402 4.76355 4.86115 4.87759 5.01749 5.04816 5.09436 5.13120 5.29202 5.38328 5.51253 5.60697 6.22972 6.38149 6.42802 6.85983 7.07594 8.25359 8.67454 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.008717 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.671815 B = 3211.402724 C = 4539.164257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.122 3.878 4 N -0.357 5.357 5 N -0.166 5.166 6 N -0.283 5.283 7 C 0.113 3.887 8 C -0.479 4.479 9 H 0.091 0.909 10 C 0.022 3.978 11 N -0.826 5.826 12 Si 0.984 3.016 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.253 1.253 16 C -0.086 4.086 17 C -0.007 4.007 18 C 0.080 3.920 19 O -0.407 6.407 20 C 0.025 3.975 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.273 0.727 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.106 0.894 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 2.117 -8.860 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C 0.001 3.999 4 N -0.152 5.152 5 N -0.141 5.141 6 N -0.153 5.153 7 C -0.020 4.020 8 C -0.515 4.515 9 H 0.109 0.891 10 C -0.192 4.192 11 N -0.454 5.454 12 Si 0.805 3.195 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.176 1.176 16 C -0.221 4.221 17 C -0.046 4.046 18 C 0.002 3.998 19 O -0.327 6.327 20 C -0.071 4.071 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.124 0.876 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.377 1.961 -7.148 14.427 hybrid contribution 0.932 0.245 -0.746 1.219 sum -11.445 2.206 -7.894 14.077 Atomic orbital electron populations 1.21651 0.91663 1.03114 1.03148 1.21856 0.98552 0.94801 1.01938 1.22030 0.73436 0.99428 1.05021 1.49988 1.07681 1.52582 1.04961 1.81356 0.96042 1.27509 1.09221 1.75063 1.08916 1.17810 1.13463 1.19571 0.93125 1.00944 0.88355 1.18910 0.89001 1.49768 0.93826 0.89130 1.26751 1.03774 0.92600 0.96106 1.70179 1.26272 1.37682 1.11231 0.85185 0.76388 0.79106 0.78829 1.19048 1.20208 1.17607 1.21702 0.90521 1.19267 0.90616 1.19460 1.02085 0.96206 0.86890 1.22337 0.98320 0.97039 0.82074 1.87791 1.89134 1.29807 1.25958 1.22949 1.00463 0.83718 0.99995 0.91332 0.91594 0.90891 0.92131 0.93375 0.88513 0.87394 0.91684 0.89514 0.90234 0.94302 0.93109 0.94078 0.87596 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.13 -3.48 6.26 30.59 0.19 -3.29 16 3 C 0.12 3.65 6.15 86.38 0.53 4.18 16 4 N -0.36 -15.63 3.63 -331.64 -1.20 -16.84 16 5 N -0.17 -9.01 13.74 37.02 0.51 -8.50 16 6 N -0.28 -17.33 10.56 -52.51 -0.55 -17.88 16 7 C 0.11 6.41 6.72 39.67 0.27 6.68 16 8 C -0.48 -26.87 9.11 23.43 0.21 -26.66 16 9 H 0.09 4.69 7.29 -2.91 -0.02 4.67 16 10 C 0.02 1.19 5.49 85.18 0.47 1.66 16 11 N -0.83 -49.22 11.92 21.79 0.26 -48.96 16 12 Si 0.98 41.27 29.56 68.60 2.03 43.30 16 13 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 14 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 15 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 16 C -0.09 -3.99 6.37 42.25 0.27 -3.72 16 17 C -0.01 -0.24 5.45 29.85 0.16 -0.08 16 18 C 0.08 2.61 5.92 71.98 0.43 3.03 16 19 O -0.41 -11.99 10.70 -148.98 -1.59 -13.59 16 20 C 0.02 0.52 11.01 113.37 1.25 1.77 16 21 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 22 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.67 8.14 -2.38 -0.02 1.66 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 27 H 0.11 2.64 7.78 -2.39 -0.02 2.62 16 28 H 0.27 14.99 8.30 -92.70 -0.77 14.22 16 29 H 0.09 2.66 7.84 -2.39 -0.02 2.64 16 30 H 0.08 3.04 7.55 -2.39 -0.02 3.02 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.04 302.15 4.99 -68.05 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.06 Total: 12.54 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 4.49 Total: -18.11 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -0.99 Total: -92.19 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.59 Total: -13.59 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -73.04 4.99 -68.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.493 kcal (2) G-P(sol) polarization free energy of solvation -73.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds