Wall clock time and date at job start Mon Mar 30 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50710 * 109.46905 * 2 1 4 4 C 1.39010 * 126.77118 * 269.97521 * 3 2 1 5 5 C 1.41488 * 126.02253 * 0.03799 * 4 3 2 6 6 H 1.08000 * 120.00479 * 359.72274 * 5 4 3 7 7 C 1.39745 * 120.00123 * 179.97438 * 5 4 3 8 8 N 1.30983 * 119.99866 * 359.72068 * 7 5 4 9 9 Si 1.86798 * 119.99961 * 179.72636 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00156 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99906 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99617 * 9 7 5 13 13 N 1.34844 * 107.95770 * 180.29749 * 4 3 2 14 14 N 1.28674 * 109.63153 * 359.55606 * 13 4 3 15 15 N 1.35016 * 126.76933 * 90.01671 * 3 2 1 16 16 C 1.46499 * 126.49317 * 359.96914 * 15 3 2 17 17 H 1.09000 * 109.47010 * 359.97438 * 16 15 3 18 18 C 1.53003 * 109.47303 * 119.99435 * 16 15 3 19 19 C 1.53006 * 109.47001 * 239.99612 * 16 15 3 20 20 C 1.52999 * 109.46967 * 174.99697 * 19 16 15 21 21 O 1.42904 * 109.46973 * 179.97438 * 20 19 16 22 22 H 1.08999 * 109.46994 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47078 * 299.99478 * 1 2 3 24 24 H 1.08999 * 109.47229 * 60.00104 * 1 2 3 25 25 H 1.08995 * 109.47078 * 240.00522 * 2 1 3 26 26 H 1.08999 * 109.47229 * 119.99896 * 2 1 3 27 27 H 0.97000 * 120.00385 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47573 * 300.00044 * 18 16 15 29 29 H 1.09000 * 109.46958 * 60.00127 * 18 16 15 30 30 H 1.09003 * 109.46966 * 179.97438 * 18 16 15 31 31 H 1.09002 * 109.47087 * 295.00000 * 19 16 15 32 32 H 1.09000 * 109.46661 * 54.99979 * 19 16 15 33 33 H 1.08995 * 109.47817 * 300.00069 * 20 19 16 34 34 H 1.09009 * 109.47022 * 60.00346 * 20 19 16 35 35 H 0.96694 * 113.99915 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3101 2.2053 -1.1135 5 6 2.1705 1.8108 -2.4651 6 1 1.8232 0.8165 -2.7043 7 6 2.4869 2.7058 -3.4906 8 7 2.9076 3.9119 -3.2005 9 14 2.3098 2.1823 -5.2749 10 1 0.9413 2.5058 -5.7522 11 1 3.3071 2.9056 -6.1042 12 1 2.5403 0.7196 -5.3869 13 7 2.7417 3.4066 -0.6787 14 7 2.7423 3.4259 0.6079 15 7 2.3020 2.1828 1.0815 16 6 2.1612 1.7851 2.4845 17 1 1.7974 0.7589 2.5364 18 6 3.5203 1.8807 3.1806 19 6 1.1650 2.7147 3.1806 20 6 0.9231 2.2248 4.6097 21 8 -0.0068 3.0934 5.2600 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1276 4.5331 -3.9123 28 1 4.2299 1.2185 2.6848 29 1 3.8837 2.9071 3.1287 30 1 3.4154 1.5853 4.2246 31 1 1.5696 3.7266 3.2069 32 1 0.2232 2.7142 2.6319 33 1 0.5186 1.2131 4.5834 34 1 1.8651 2.2254 5.1583 35 1 -0.2073 2.8428 6.1721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:26 Heat of formation + Delta-G solvation = 19.408897 kcal Electronic energy + Delta-G solvation = -17415.459172 eV Core-core repulsion = 14642.965115 eV Total energy + Delta-G solvation = -2772.494058 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.04990 -37.41500 -35.29425 -33.42486 -32.99326 -30.28904 -28.56482 -28.18753 -25.12549 -24.02622 -22.81138 -21.60005 -19.62806 -18.83401 -17.57804 -16.64242 -15.68590 -15.30417 -14.89529 -14.28549 -13.83298 -13.69953 -13.50829 -13.13326 -12.69326 -12.53250 -11.98183 -11.70381 -11.39645 -11.30399 -11.18080 -11.11976 -10.99861 -10.91257 -10.49876 -10.36569 -10.17913 -9.97853 -9.61091 -9.24651 -8.80368 -8.38847 -7.33442 -6.31398 -4.10376 2.86585 3.19451 3.23608 3.26379 3.53133 4.17457 4.22594 4.37332 4.88414 5.08408 5.17290 5.28798 5.34940 5.45765 5.56169 5.63690 5.68458 5.80926 5.93886 6.06026 6.08163 6.26591 6.30733 6.39739 6.41971 6.59769 6.82749 6.99872 7.21148 7.48563 7.52334 7.58420 8.22746 8.48093 8.89012 9.14499 10.28046 10.65580 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.006339 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.947954 B = 4416.007748 C = 4731.972833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.019 4.019 3 C -0.114 4.114 4 C 0.153 3.847 5 C -0.451 4.451 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.778 5.778 9 Si 0.905 3.095 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.265 1.265 13 N -0.229 5.229 14 N -0.130 5.130 15 N -0.372 5.372 16 C 0.170 3.830 17 H 0.089 0.911 18 C -0.160 4.160 19 C -0.127 4.127 20 C 0.079 3.921 21 O -0.573 6.573 22 H 0.045 0.955 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.271 0.729 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.032 -7.525 11.625 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 C -0.245 4.245 4 C 0.023 3.977 5 C -0.487 4.487 6 H 0.098 0.902 7 C -0.146 4.146 8 N -0.404 5.404 9 Si 0.731 3.269 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.190 1.190 13 N -0.101 5.101 14 N -0.106 5.106 15 N -0.168 5.168 16 C 0.065 3.935 17 H 0.107 0.893 18 C -0.218 4.218 19 C -0.165 4.165 20 C 0.001 3.999 21 O -0.378 6.378 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -2.405 -5.571 11.344 12.865 hybrid contribution -0.452 -1.530 -0.484 1.667 sum -2.857 -7.100 10.860 13.286 Atomic orbital electron populations 1.21753 0.96203 1.00080 1.02061 1.19544 0.94668 0.90495 1.01156 1.21422 1.19070 0.96607 0.87413 1.18971 0.97861 0.87530 0.93306 1.18509 1.42774 0.99779 0.87615 0.90200 1.25772 0.93684 0.94523 1.00590 1.70019 1.32106 1.04609 1.33681 0.86379 0.78453 0.79468 0.82642 1.19875 1.20583 1.18961 1.75103 1.15782 1.19611 0.99607 1.81457 1.22089 0.99935 1.07082 1.49488 1.50772 1.12364 1.04161 1.20743 0.95774 0.97921 0.79082 0.89342 1.22185 0.96365 1.03816 0.99470 1.21817 1.00077 1.01073 0.93553 1.22202 0.91762 0.92421 0.93506 1.86518 1.65328 1.55287 1.30641 0.93550 0.93932 0.91852 0.90450 0.93500 0.91844 0.92104 0.91095 0.91644 0.89899 0.90845 0.93689 0.93201 0.77703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 37.16 0.37 -1.99 16 2 C -0.02 -0.35 5.83 -27.88 -0.16 -0.51 16 3 C -0.11 -2.67 6.37 -80.90 -0.52 -3.19 16 4 C 0.15 4.29 6.72 -85.02 -0.57 3.72 16 5 C -0.45 -12.42 9.11 -37.78 -0.34 -12.77 16 6 H 0.08 2.04 7.30 -52.49 -0.38 1.66 16 7 C 0.07 1.97 5.49 -17.35 -0.10 1.88 16 8 N -0.78 -22.47 11.92 55.54 0.66 -21.81 16 9 Si 0.91 19.88 29.56 -169.99 -5.02 14.85 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 N -0.23 -6.79 10.56 32.05 0.34 -6.45 16 14 N -0.13 -3.43 13.62 60.35 0.82 -2.61 16 15 N -0.37 -8.23 3.29 -49.73 -0.16 -8.39 16 16 C 0.17 2.76 3.15 -67.93 -0.21 2.54 16 17 H 0.09 1.26 6.80 -51.93 -0.35 0.91 16 18 C -0.16 -2.27 9.22 37.16 0.34 -1.93 16 19 C -0.13 -1.96 5.32 -26.73 -0.14 -2.10 16 20 C 0.08 0.90 6.80 37.16 0.25 1.15 16 21 O -0.57 -6.83 13.66 -35.23 -0.48 -7.31 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.44 7.56 -51.93 -0.39 1.04 16 26 H 0.05 0.74 7.20 -51.93 -0.37 0.36 16 27 H 0.27 7.20 8.30 -40.82 -0.34 6.86 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.48 6.57 -51.92 -0.34 0.14 16 35 H 0.38 2.44 9.12 45.56 0.42 2.85 16 LS Contribution 296.36 15.07 4.47 4.47 Total: -1.00 -33.73 296.36 -4.75 -38.48 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.29 Total: 1.96 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.08 Total: -13.19 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 1.66 Total: -39.26 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.48 Total: -7.31 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.73 -4.75 -38.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.888 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds