Wall clock time and date at job start Mon Mar 30 2020 03:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50710 * 109.46905 * 2 1 4 4 C 1.39010 * 126.77118 * 269.97521 * 3 2 1 5 5 C 1.41488 * 126.02253 * 0.03799 * 4 3 2 6 6 H 1.08000 * 120.00479 * 359.72274 * 5 4 3 7 7 C 1.39745 * 120.00123 * 179.97438 * 5 4 3 8 8 N 1.30983 * 119.99866 * 359.72068 * 7 5 4 9 9 Si 1.86798 * 119.99961 * 179.72636 * 7 5 4 10 10 H 1.48493 * 109.47326 * 90.00156 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99906 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99617 * 9 7 5 13 13 N 1.34844 * 107.95770 * 180.29749 * 4 3 2 14 14 N 1.28674 * 109.63153 * 359.55606 * 13 4 3 15 15 N 1.35016 * 126.76933 * 90.01671 * 3 2 1 16 16 C 1.46499 * 126.49317 * 359.96914 * 15 3 2 17 17 H 1.09000 * 109.47010 * 359.97438 * 16 15 3 18 18 C 1.53003 * 109.47303 * 119.99435 * 16 15 3 19 19 C 1.53006 * 109.47001 * 239.99612 * 16 15 3 20 20 C 1.52999 * 109.46967 * 174.99697 * 19 16 15 21 21 O 1.42904 * 109.46973 * 179.97438 * 20 19 16 22 22 H 1.08999 * 109.46994 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47078 * 299.99478 * 1 2 3 24 24 H 1.08999 * 109.47229 * 60.00104 * 1 2 3 25 25 H 1.08995 * 109.47078 * 240.00522 * 2 1 3 26 26 H 1.08999 * 109.47229 * 119.99896 * 2 1 3 27 27 H 0.97000 * 120.00385 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47573 * 300.00044 * 18 16 15 29 29 H 1.09000 * 109.46958 * 60.00127 * 18 16 15 30 30 H 1.09003 * 109.46966 * 179.97438 * 18 16 15 31 31 H 1.09002 * 109.47087 * 295.00000 * 19 16 15 32 32 H 1.09000 * 109.46661 * 54.99979 * 19 16 15 33 33 H 1.08995 * 109.47817 * 300.00069 * 20 19 16 34 34 H 1.09009 * 109.47022 * 60.00346 * 20 19 16 35 35 H 0.96694 * 113.99915 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3101 2.2053 -1.1135 5 6 2.1705 1.8108 -2.4651 6 1 1.8232 0.8165 -2.7043 7 6 2.4869 2.7058 -3.4906 8 7 2.9076 3.9119 -3.2005 9 14 2.3098 2.1823 -5.2749 10 1 0.9413 2.5058 -5.7522 11 1 3.3071 2.9056 -6.1042 12 1 2.5403 0.7196 -5.3869 13 7 2.7417 3.4066 -0.6787 14 7 2.7423 3.4259 0.6079 15 7 2.3020 2.1828 1.0815 16 6 2.1612 1.7851 2.4845 17 1 1.7974 0.7589 2.5364 18 6 3.5203 1.8807 3.1806 19 6 1.1650 2.7147 3.1806 20 6 0.9231 2.2248 4.6097 21 8 -0.0068 3.0934 5.2600 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1276 4.5331 -3.9123 28 1 4.2299 1.2185 2.6848 29 1 3.8837 2.9071 3.1287 30 1 3.4154 1.5853 4.2246 31 1 1.5696 3.7266 3.2069 32 1 0.2232 2.7142 2.6319 33 1 0.5186 1.2131 4.5834 34 1 1.8651 2.2254 5.1583 35 1 -0.2073 2.8428 6.1721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958545705.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:26 Heat of formation + Delta-G solvation = -6.904593 kcal Electronic energy + Delta-G solvation = -17416.600211 eV Core-core repulsion = 14642.965115 eV Total energy + Delta-G solvation = -2773.635096 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.93001 -38.48331 -36.61737 -35.24838 -34.65973 -31.92876 -30.41916 -29.39794 -26.96790 -25.42974 -24.32604 -23.11383 -21.40212 -20.43738 -18.95200 -18.11049 -17.12806 -16.81477 -16.43056 -15.97255 -15.33004 -15.03691 -14.83116 -14.54317 -14.20366 -13.94858 -13.28311 -13.19716 -13.04630 -12.87408 -12.81879 -12.43793 -12.41922 -12.25748 -12.10489 -11.90589 -11.79284 -11.43964 -11.16059 -10.84679 -10.72957 -10.25202 -9.32430 -8.28053 -6.16112 1.02852 1.43934 1.45413 1.58452 1.95447 2.34921 2.36096 3.22777 3.55141 3.67236 3.93899 4.04259 4.12815 4.23098 4.26605 4.33163 4.47717 4.61246 4.69951 4.73553 4.85522 4.87680 4.91895 5.04584 5.12916 5.18415 5.21007 5.37902 5.46620 5.57028 5.70248 6.42067 6.49082 6.92547 6.95068 7.11784 8.32699 8.71902 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.035572 B = 0.006339 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.947954 B = 4416.007748 C = 4731.972833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.022 4.022 3 C -0.082 4.082 4 C 0.103 3.897 5 C -0.479 4.479 6 H 0.092 0.908 7 C 0.018 3.982 8 N -0.832 5.832 9 Si 0.985 3.015 10 H -0.268 1.268 11 H -0.279 1.279 12 H -0.250 1.250 13 N -0.287 5.287 14 N -0.171 5.171 15 N -0.354 5.354 16 C 0.155 3.845 17 H 0.125 0.875 18 C -0.154 4.154 19 C -0.121 4.121 20 C 0.087 3.913 21 O -0.599 6.599 22 H 0.088 0.912 23 H 0.045 0.955 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.271 0.729 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.115 0.885 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 -10.855 13.395 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.217 4.217 4 C -0.030 4.030 5 C -0.516 4.516 6 H 0.110 0.890 7 C -0.195 4.195 8 N -0.460 5.460 9 Si 0.807 3.193 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.173 1.173 13 N -0.155 5.155 14 N -0.146 5.146 15 N -0.149 5.149 16 C 0.052 3.948 17 H 0.142 0.858 18 C -0.211 4.211 19 C -0.160 4.160 20 C 0.010 3.990 21 O -0.408 6.408 22 H 0.106 0.894 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.297 -8.885 13.211 16.258 hybrid contribution -0.246 -0.616 -0.758 1.007 sum -3.542 -9.501 12.452 16.058 Atomic orbital electron populations 1.21676 0.94272 1.02459 1.00936 1.19817 0.96130 0.87052 1.03160 1.22331 1.14642 0.98157 0.86615 1.19613 0.99958 0.88321 0.95149 1.18901 1.43816 1.00599 0.88240 0.88965 1.26776 0.92911 0.94223 1.05561 1.70198 1.34520 1.06231 1.35079 0.85162 0.78368 0.79622 0.76155 1.19296 1.20473 1.17309 1.75049 1.18153 1.21384 1.00963 1.81330 1.24849 1.02054 1.06330 1.50025 1.47395 1.10942 1.06512 1.21394 0.97667 0.99741 0.75951 0.85756 1.22164 0.94482 1.02404 1.02085 1.21713 0.98163 0.99567 0.96578 1.22131 0.93231 0.93106 0.90579 1.86452 1.65527 1.56079 1.32759 0.89370 0.93571 0.94569 0.90392 0.89505 0.91953 0.92561 0.93530 0.86693 0.92942 0.93360 0.90783 0.90743 0.74815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.89 71.98 0.71 -3.30 16 2 C -0.02 -0.74 5.83 29.85 0.17 -0.57 16 3 C -0.08 -3.81 6.37 42.26 0.27 -3.54 16 4 C 0.10 5.93 6.72 39.67 0.27 6.20 16 5 C -0.48 -27.16 9.11 23.44 0.21 -26.95 16 6 H 0.09 4.75 7.30 -2.91 -0.02 4.73 16 7 C 0.02 1.02 5.49 85.18 0.47 1.49 16 8 N -0.83 -50.76 11.92 21.80 0.26 -50.50 16 9 Si 0.99 41.85 29.56 68.60 2.03 43.88 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 13 N -0.29 -17.94 10.56 -52.52 -0.55 -18.49 16 14 N -0.17 -9.45 13.62 37.02 0.50 -8.95 16 15 N -0.35 -15.63 3.29 -311.26 -1.02 -16.65 16 16 C 0.15 4.64 3.15 44.99 0.14 4.78 16 17 H 0.12 2.90 6.80 -2.39 -0.02 2.88 16 18 C -0.15 -3.93 9.22 71.98 0.66 -3.27 16 19 C -0.12 -3.58 5.32 30.60 0.16 -3.42 16 20 C 0.09 1.64 6.80 71.98 0.49 2.13 16 21 O -0.60 -12.58 13.66 -148.98 -2.04 -14.61 16 22 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 2.68 7.56 -2.39 -0.02 2.66 16 26 H 0.09 2.27 7.20 -2.39 -0.02 2.25 16 27 H 0.27 15.26 8.30 -92.71 -0.77 14.49 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.82 6.56 -2.39 -0.02 1.80 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.05 6.57 -2.38 -0.02 1.03 16 35 H 0.40 3.78 9.12 -74.06 -0.68 3.11 16 Total: -1.00 -80.54 296.36 3.16 -77.39 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.42 Total: 14.39 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 3.56 Total: -26.45 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -0.81 Total: -94.60 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -2.04 Total: -14.61 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -80.54 3.16 -77.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545705.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.483 kcal (2) G-P(sol) polarization free energy of solvation -80.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds