Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.39009 * 126.77315 * 269.69170 * 4 3 2 6 6 C 1.41495 * 126.02132 * 359.97438 * 5 4 3 7 7 H 1.08002 * 119.99622 * 0.02562 * 6 5 4 8 8 C 1.39733 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.30988 * 120.00275 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00035 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46799 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46967 * 120.00427 * 10 8 6 13 13 H 1.48498 * 109.47225 * 240.00709 * 10 8 6 14 14 N 1.34846 * 107.95870 * 179.83134 * 5 4 3 15 15 N 1.28674 * 109.63417 * 0.43749 * 14 5 4 16 16 N 1.35021 * 126.77302 * 89.99922 * 4 3 2 17 17 C 1.46504 * 126.48998 * 359.97438 * 16 4 3 18 18 H 1.09000 * 109.47205 * 359.97438 * 17 16 4 19 19 C 1.52998 * 109.47288 * 119.99839 * 17 16 4 20 20 C 1.53002 * 109.46890 * 239.99899 * 17 16 4 21 21 O 1.42907 * 109.46877 * 175.00137 * 20 17 16 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 0.97005 * 119.99868 * 179.97438 * 9 8 6 30 30 H 1.08995 * 109.47673 * 179.97438 * 19 17 16 31 31 H 1.09001 * 109.47558 * 300.00323 * 19 17 16 32 32 H 1.09000 * 109.46925 * 59.99918 * 19 17 16 33 33 H 1.08994 * 109.47146 * 294.99974 * 20 17 16 34 34 H 1.08997 * 109.47015 * 55.00588 * 20 17 16 35 35 H 0.96698 * 113.99805 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3796 1.4485 1.1125 6 6 3.9616 1.4560 2.4643 7 1 2.9085 1.4572 2.7038 8 6 4.9114 1.4608 3.4892 9 7 6.1886 1.4589 3.1986 10 14 4.3596 1.4701 5.2739 11 1 2.8757 1.4703 5.3331 12 1 4.8818 0.2609 5.9597 13 1 4.8824 2.6859 5.9474 14 7 5.6558 1.4425 0.6771 15 7 5.6737 1.4427 -0.6095 16 7 4.3548 1.4428 -1.0825 17 6 3.9323 1.4424 -2.4853 18 1 2.8435 1.4415 -2.5369 19 6 4.4752 2.6918 -3.1818 20 6 4.4764 0.1933 -3.1814 21 8 3.9692 0.1327 -4.5161 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 6.8479 1.4626 3.9102 30 1 4.1613 2.6914 -4.2256 31 1 4.0877 3.5817 -2.6859 32 1 5.5640 2.6923 -3.1303 33 1 5.5651 0.2374 -3.2082 34 1 4.1621 -0.6944 -2.6327 35 1 4.2733 -0.6359 -5.0179 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958545711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = 18.154772 kcal Electronic energy + Delta-G solvation = -17530.416177 eV Core-core repulsion = 14757.867737 eV Total energy + Delta-G solvation = -2772.548441 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09545 -37.21196 -34.70151 -34.18639 -32.97389 -30.14278 -29.17749 -26.53264 -26.13476 -24.44872 -22.39103 -21.23143 -19.80100 -18.85130 -17.49317 -16.68992 -15.41559 -14.95760 -14.74641 -14.64837 -14.35922 -13.49264 -13.40957 -13.01114 -12.59339 -12.39897 -12.05577 -11.89399 -11.43870 -11.32097 -11.15499 -10.99172 -10.85202 -10.80393 -10.50417 -10.26514 -10.13006 -9.94390 -9.63333 -9.29068 -8.84975 -8.44110 -7.37643 -6.34866 -4.13812 2.80299 3.15910 3.22015 3.25728 3.42506 4.15189 4.32624 4.47501 4.98226 5.21784 5.34840 5.41768 5.46511 5.56678 5.62863 5.72708 5.76367 5.92907 5.96171 6.10016 6.18252 6.22911 6.31929 6.40928 6.47177 6.64099 6.83199 6.97065 7.16808 7.45112 7.54674 7.57616 8.17749 8.45609 8.84953 9.11334 10.22497 10.62037 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.024645 B = 0.007910 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.854819 B = 3539.057277 C = 4363.414598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.014 4.014 4 C -0.111 4.111 5 C 0.154 3.846 6 C -0.449 4.449 7 H 0.081 0.919 8 C 0.073 3.927 9 N -0.777 5.777 10 Si 0.905 3.095 11 H -0.264 1.264 12 H -0.277 1.277 13 H -0.277 1.277 14 N -0.227 5.227 15 N -0.133 5.133 16 N -0.372 5.372 17 C 0.168 3.832 18 H 0.095 0.905 19 C -0.152 4.152 20 C 0.072 3.928 21 O -0.573 6.573 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.271 0.729 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 -2.228 -8.623 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.054 4.054 4 C -0.242 4.242 5 C 0.024 3.976 6 C -0.485 4.485 7 H 0.099 0.901 8 C -0.146 4.146 9 N -0.404 5.404 10 Si 0.730 3.270 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.203 1.203 14 N -0.099 5.099 15 N -0.108 5.108 16 N -0.170 5.170 17 C 0.063 3.937 18 H 0.113 0.887 19 C -0.210 4.210 20 C -0.007 4.007 21 O -0.377 6.377 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.958 -1.672 -8.760 10.725 hybrid contribution -0.952 -0.569 0.886 1.419 sum -6.910 -2.241 -7.874 10.713 Atomic orbital electron populations 1.21780 0.96563 1.00926 1.01382 1.21526 0.94420 0.97585 1.02108 1.19631 0.88396 0.96051 1.01343 1.21430 0.93216 1.22315 0.87224 1.18978 0.85876 0.99417 0.93317 1.18557 0.93865 1.48567 0.87552 0.90071 1.25776 0.94617 0.93563 1.00641 1.70030 1.00747 1.35977 1.33623 0.86324 0.79715 0.78170 0.82776 1.18758 1.20294 1.20274 1.75103 1.20183 1.15085 0.99530 1.81456 0.96787 1.25391 1.07185 1.49433 1.06990 1.56496 1.04056 1.20653 0.99500 0.94975 0.78588 0.88722 1.22035 1.02385 0.96440 1.00121 1.22427 0.98310 0.97469 0.82473 1.86368 1.75033 1.50685 1.25645 0.92681 0.93337 0.93323 0.91150 0.93249 0.93335 0.90378 0.91872 0.90986 0.92358 0.91547 0.92276 0.93322 0.77279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.95 5.92 -26.73 -0.16 -2.11 16 3 C -0.01 -0.27 5.11 -27.89 -0.14 -0.41 16 4 C -0.11 -2.58 6.37 -80.91 -0.52 -3.10 16 5 C 0.15 4.25 6.72 -85.02 -0.57 3.67 16 6 C -0.45 -12.24 9.11 -37.78 -0.34 -12.58 16 7 H 0.08 2.06 7.29 -52.49 -0.38 1.67 16 8 C 0.07 1.94 5.49 -17.35 -0.10 1.85 16 9 N -0.78 -22.15 11.92 55.54 0.66 -21.49 16 10 Si 0.90 19.68 29.56 -169.99 -5.02 14.65 16 11 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 N -0.23 -6.62 10.56 32.05 0.34 -6.28 16 15 N -0.13 -3.44 13.62 60.35 0.82 -2.62 16 16 N -0.37 -8.24 3.29 -49.74 -0.16 -8.40 16 17 C 0.17 2.90 3.39 -67.93 -0.23 2.67 16 18 H 0.09 1.53 6.80 -51.93 -0.35 1.18 16 19 C -0.15 -2.39 9.36 37.16 0.35 -2.04 16 20 C 0.07 1.10 6.70 37.16 0.25 1.35 16 21 O -0.57 -7.21 13.19 -35.23 -0.46 -7.67 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.80 7.20 -51.93 -0.37 0.43 16 28 H 0.08 1.46 7.55 -51.93 -0.39 1.07 16 29 H 0.27 7.07 8.30 -40.82 -0.34 6.73 16 30 H 0.07 0.97 7.82 -51.93 -0.41 0.57 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.38 2.96 9.12 45.56 0.42 3.37 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -32.11 298.89 -4.85 -36.96 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.43 Total: 2.64 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.09 Total: -12.28 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 1.66 Total: -38.79 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.46 Total: -7.67 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.11 -4.85 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958545711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.111 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds