Wall clock time and date at job start Mon Mar 30 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.49010 * 2 1 4 4 C 1.53091 * 109.48146 * 239.97059 * 2 1 3 5 5 C 1.53178 * 109.13749 * 182.35202 * 4 2 1 6 6 H 1.09001 * 109.53672 * 297.04389 * 5 4 2 7 7 C 1.50705 * 109.53870 * 176.88327 * 5 4 2 8 8 H 1.07994 * 119.99575 * 239.99252 * 7 5 4 9 9 C 1.37873 * 119.99869 * 59.99558 * 7 5 4 10 10 N 1.31511 * 120.00651 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 119.99884 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47013 * 59.99645 * 11 9 7 13 13 H 1.48490 * 109.47420 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46913 * 300.00366 * 11 9 7 15 15 C 1.53139 * 109.06945 * 57.00423 * 5 4 2 16 16 H 1.08994 * 109.55181 * 183.13082 * 15 5 4 17 17 C 1.53002 * 109.38878 * 62.73455 * 15 5 4 18 18 N 1.46847 * 109.55980 * 181.39708 * 17 15 5 19 19 C 1.46898 * 111.00040 * 185.82391 * 18 17 15 20 20 C 1.46841 * 111.19410 * 61.72920 * 18 17 15 21 21 C 1.53036 * 109.50356 * 298.21120 * 20 18 17 22 22 C 1.53096 * 109.29626 * 59.20207 * 21 20 18 23 23 H 1.09004 * 109.70268 * 182.37996 * 22 21 20 24 24 O 1.42875 * 109.40936 * 62.20646 * 22 21 20 25 25 H 1.09002 * 109.47063 * 299.96216 * 1 2 3 26 26 H 1.08993 * 109.47320 * 59.96561 * 1 2 3 27 27 H 1.09004 * 109.46701 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.52310 * 302.24040 * 4 2 1 29 29 H 1.08992 * 109.53372 * 62.38119 * 4 2 1 30 30 H 0.97003 * 120.00563 * 180.02562 * 10 9 7 31 31 H 1.08995 * 109.46451 * 301.42775 * 17 15 5 32 32 H 1.09008 * 109.45645 * 61.38899 * 17 15 5 33 33 H 1.08996 * 109.47460 * 59.99711 * 19 18 17 34 34 H 1.08998 * 109.47004 * 180.02562 * 19 18 17 35 35 H 1.09001 * 109.46911 * 299.99783 * 19 18 17 36 36 H 1.08999 * 109.46869 * 58.21468 * 20 18 17 37 37 H 1.08993 * 109.46945 * 178.20620 * 20 18 17 38 38 H 1.09008 * 109.50458 * 299.25733 * 21 20 18 39 39 H 1.09002 * 109.50613 * 179.15151 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 3.5712 -0.7693 -1.2122 6 1 3.9679 0.2455 -1.2425 7 6 4.0807 -1.5452 -2.3994 8 1 4.6715 -2.4366 -2.2487 9 6 3.7926 -1.1170 -3.6779 10 7 3.0737 -0.0313 -3.8615 11 14 4.4236 -2.0792 -5.1495 12 1 3.8850 -3.4624 -5.1044 13 1 3.9806 -1.4155 -6.4018 14 1 5.9075 -2.1244 -5.1120 15 6 4.0192 -1.4578 0.0802 16 1 5.1074 -1.4461 0.1414 17 6 3.5154 -2.9025 0.0871 18 7 3.9144 -3.5564 1.3399 19 6 3.5677 -4.9837 1.3225 20 6 3.3197 -2.8845 2.5023 21 6 3.8196 -1.4396 2.5684 22 6 3.4304 -0.7101 1.2799 23 1 3.8200 0.3077 1.3019 24 8 2.0067 -0.6742 1.1662 25 1 -0.3633 0.5133 0.8903 26 1 -0.3633 0.5143 -0.8896 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6454 -1.7379 -1.2702 29 1 1.7132 -0.1857 -2.1400 30 1 2.8707 0.2698 -4.7611 31 1 2.4286 -2.9085 0.0046 32 1 3.9465 -3.4414 -0.7567 33 1 4.0810 -5.4723 0.4943 34 1 3.8737 -5.4435 2.2621 35 1 2.4904 -5.0944 1.1982 36 1 2.2338 -2.8890 2.4082 37 1 3.6076 -3.4104 3.4125 38 1 4.9044 -1.4344 2.6760 39 1 3.3665 -0.9364 3.4225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259413223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:25 Heat of formation + Delta-G solvation = -73.115689 kcal Electronic energy + Delta-G solvation = -18848.773631 eV Core-core repulsion = 16175.807750 eV Total energy + Delta-G solvation = -2672.965881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29496 -38.08013 -36.07463 -34.09784 -33.40346 -31.70565 -29.07238 -27.40137 -27.05459 -24.67740 -23.55705 -22.62559 -21.65678 -19.70676 -18.24859 -17.18137 -16.93673 -16.56136 -16.13906 -15.91064 -15.63444 -14.77486 -14.68780 -14.42002 -14.16101 -13.74681 -13.37694 -13.15948 -13.00912 -12.85641 -12.75805 -12.66712 -12.50431 -12.28628 -12.19144 -11.95163 -11.85314 -11.41582 -11.29134 -10.91870 -10.71783 -10.41645 -9.95883 -9.15411 -8.07883 -6.20595 1.40730 1.41005 1.48540 2.42595 2.85800 3.12900 3.20712 3.90714 3.99971 4.11562 4.20790 4.31115 4.35910 4.45626 4.53057 4.53811 4.67914 4.69330 4.72911 4.86455 4.91907 4.98793 5.00896 5.04066 5.05423 5.11129 5.19440 5.26446 5.27540 5.31948 5.53476 5.64298 5.92080 6.03928 6.21296 6.29445 6.36772 6.50701 6.87620 7.46502 8.95961 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.009931 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.262132 B = 2818.778066 C = 3593.145358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.083 3.917 3 H 0.039 0.961 4 C -0.121 4.121 5 C 0.050 3.950 6 H -0.007 1.007 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.015 3.985 10 N -0.916 5.916 11 Si 0.948 3.052 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.096 4.096 16 H 0.060 0.940 17 C 0.093 3.907 18 N -0.555 5.555 19 C 0.028 3.972 20 C 0.062 3.938 21 C -0.099 4.099 22 C 0.089 3.911 23 H 0.047 0.953 24 O -0.386 6.386 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.260 0.740 31 H 0.018 0.982 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.018 0.982 36 H 0.025 0.975 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 -3.927 11.190 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.026 3.974 3 H 0.057 0.943 4 C -0.160 4.160 5 C 0.031 3.969 6 H 0.011 0.989 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.183 4.183 10 N -0.556 5.556 11 Si 0.774 3.226 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.115 4.115 16 H 0.078 0.922 17 C -0.035 4.035 18 N -0.280 5.280 19 C -0.120 4.120 20 C -0.066 4.066 21 C -0.137 4.137 22 C 0.031 3.969 23 H 0.065 0.935 24 O -0.306 6.306 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.036 0.964 36 H 0.043 0.957 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.457 -3.874 11.228 11.966 hybrid contribution -0.357 -0.134 -1.715 1.756 sum -1.814 -4.008 9.513 10.481 Atomic orbital electron populations 1.21659 0.92109 1.02314 1.02590 1.22201 0.95590 0.94148 0.85453 0.94257 1.22040 0.98236 0.98452 0.97226 1.18653 0.92501 0.93933 0.91804 0.98928 1.21434 1.32472 1.10645 0.91526 0.92852 1.25672 0.95422 0.95881 1.01368 1.69988 1.39418 1.24127 1.22049 0.85770 0.78870 0.78982 0.78995 1.19844 1.21035 1.19820 1.21625 0.99239 0.95018 0.95602 0.92176 1.21719 0.96697 0.94264 0.90827 1.62029 1.59755 1.03316 1.02879 1.22358 0.98335 0.88016 1.03333 1.22017 0.96354 0.94668 0.93526 1.21609 1.02007 0.94674 0.95395 1.22202 0.81094 0.97718 0.95857 0.93550 1.87732 1.21210 1.78335 1.43308 0.90918 0.90935 0.92689 0.95064 0.91296 0.93094 0.96423 0.92463 0.91825 0.89316 0.96371 0.95700 0.88685 0.89226 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.57 71.98 0.69 -3.56 16 2 C 0.08 3.34 3.26 30.63 0.10 3.44 16 3 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 4 C -0.12 -5.81 4.06 30.68 0.12 -5.69 16 5 C 0.05 2.53 1.97 -11.43 -0.02 2.51 16 6 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 7 C -0.52 -28.68 7.84 25.60 0.20 -28.48 16 8 H 0.05 2.91 6.53 -2.91 -0.02 2.89 16 9 C 0.02 0.84 5.30 84.65 0.45 1.28 16 10 N -0.92 -52.59 11.36 21.45 0.24 -52.34 16 11 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 15 C -0.10 -4.08 2.20 -10.70 -0.02 -4.10 16 16 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 17 C 0.09 3.76 4.03 86.31 0.35 4.10 16 18 N -0.56 -18.30 4.91 -922.70 -4.53 -22.83 16 19 C 0.03 0.75 9.59 127.69 1.22 1.97 16 20 C 0.06 1.78 5.33 86.33 0.46 2.24 16 21 C -0.10 -2.85 5.82 30.64 0.18 -2.67 16 22 C 0.09 3.27 2.88 30.67 0.09 3.36 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 24 O -0.39 -14.88 8.89 -148.98 -1.32 -16.20 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.03 1.54 6.58 -2.39 -0.02 1.52 16 29 H 0.07 3.68 6.18 -2.39 -0.01 3.67 16 30 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.02 0.78 6.07 -2.39 -0.01 0.76 16 32 H 0.06 2.54 6.48 -2.38 -0.02 2.53 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 35 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.02 0.79 7.75 -2.39 -0.02 0.77 16 37 H 0.09 2.15 8.08 -2.39 -0.02 2.13 16 38 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -59.97 291.52 1.23 -58.74 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.00 Total: 12.40 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 3.82 Total: -25.59 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -4.29 Total: -75.18 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -1.32 Total: -16.20 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -59.97 1.23 -58.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259413223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.373 kcal (2) G-P(sol) polarization free energy of solvation -59.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds