Wall clock time and date at job start Mon Mar 30 2020 04:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.33187 * 2 1 4 4 C 1.54478 * 110.46345 * 237.68591 * 2 1 3 5 5 C 1.54688 * 104.07611 * 217.04717 * 4 2 1 6 6 C 1.54476 * 103.98042 * 0.13760 * 5 4 2 7 7 H 1.08999 * 110.37042 * 264.95938 * 6 5 4 8 8 C 1.52997 * 110.37119 * 142.73825 * 6 5 4 9 9 H 1.09006 * 115.56148 * 327.23318 * 8 6 5 10 10 C 1.52997 * 117.50261 * 112.93006 * 8 6 5 11 11 C 1.53004 * 60.00166 * 107.48499 * 10 8 6 12 12 H 1.09002 * 117.49819 * 252.48492 * 11 10 8 13 13 N 1.46901 * 117.49586 * 107.49046 * 11 10 8 14 14 C 1.46896 * 110.99831 * 136.39032 * 13 11 10 15 15 C 1.52998 * 109.47029 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.47348 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 O 1.44420 * 110.37235 * 122.24670 * 2 1 3 25 25 H 1.09003 * 109.46734 * 299.20497 * 1 2 3 26 26 H 1.09000 * 109.46737 * 59.20439 * 1 2 3 27 27 H 1.09003 * 109.46886 * 179.20469 * 1 2 3 28 28 H 1.09000 * 110.51381 * 335.78543 * 4 2 1 29 29 H 1.09005 * 110.51025 * 98.50026 * 4 2 1 30 30 H 1.09002 * 110.61553 * 241.48667 * 5 4 2 31 31 H 1.09001 * 110.48605 * 118.72648 * 5 4 2 32 32 H 1.08999 * 117.49777 * 359.97438 * 10 8 6 33 33 H 1.08997 * 117.49867 * 214.98137 * 10 8 6 34 34 H 1.00897 * 111.00079 * 260.34416 * 13 11 10 35 35 H 1.09000 * 109.47274 * 60.00200 * 14 13 11 36 36 H 1.09002 * 109.47154 * 299.99707 * 14 13 11 37 37 H 1.09001 * 109.47671 * 60.00253 * 15 14 13 38 38 H 1.09006 * 109.47297 * 299.99972 * 15 14 13 39 39 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0701 -0.7737 -1.2232 5 6 3.3236 -1.5023 -0.6840 6 6 3.3883 -1.0839 0.8017 7 1 4.0524 -0.2286 0.9264 8 6 3.8621 -2.2551 1.6646 9 1 3.5613 -3.2447 1.3206 10 6 5.2289 -2.1273 2.3402 11 6 3.9506 -2.0290 3.1753 12 1 3.6716 -1.0460 3.5546 13 7 3.6237 -3.1623 4.0510 14 6 3.1762 -2.6962 5.3702 15 6 2.8463 -3.9020 6.2522 16 6 2.3865 -3.4238 7.6054 17 1 2.3351 -2.3657 7.8154 18 6 2.0314 -4.3372 8.5753 19 7 2.0945 -5.6257 8.3197 20 14 1.4622 -3.7444 10.2528 21 1 1.1408 -4.9148 11.1084 22 1 2.5418 -2.9473 10.8887 23 1 0.2509 -2.9000 10.0946 24 8 2.0328 -0.7224 1.1450 25 1 -0.3633 0.5015 0.8971 26 1 -0.3633 0.5261 -0.8828 27 1 -0.3633 -1.0276 -0.0143 28 1 1.3314 -1.4928 -1.5769 29 1 2.3450 -0.0834 -2.0207 30 1 4.2172 -1.1713 -1.2132 31 1 3.2045 -2.5822 -0.7719 32 1 5.7907 -1.2090 2.1696 33 1 5.8273 -3.0328 2.4406 34 1 2.9319 -3.7606 3.6250 35 1 2.2870 -2.0764 5.2541 36 1 3.9686 -2.1111 5.8369 37 1 3.7356 -4.5215 6.3683 38 1 2.0540 -4.4876 5.7857 39 1 2.3904 -5.9335 7.4487 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309089082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:19 Heat of formation + Delta-G solvation = -43.440495 kcal Electronic energy + Delta-G solvation = -16847.306791 eV Core-core repulsion = 14175.627722 eV Total energy + Delta-G solvation = -2671.679068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.88212 -37.53299 -34.52856 -32.60501 -32.40154 -31.25533 -28.27282 -26.24656 -23.66674 -22.59939 -21.52882 -21.05804 -20.63542 -20.30774 -16.83117 -16.57031 -16.11588 -15.62551 -15.10246 -14.23517 -13.99253 -13.96767 -13.67034 -13.23320 -12.81551 -12.65462 -12.23592 -12.13987 -11.96638 -11.73805 -11.37282 -11.30286 -11.11802 -10.88479 -10.86609 -10.56842 -10.12650 -10.08109 -9.91976 -9.83728 -9.62042 -8.53328 -8.27600 -7.77335 -6.31459 -3.99862 3.44485 3.47385 3.49923 3.68499 4.17461 4.23304 4.40617 4.53769 4.62655 4.67484 4.80975 4.96442 5.10944 5.17994 5.23549 5.26861 5.42988 5.46520 5.50399 5.52334 5.60108 5.71328 5.82868 5.83762 5.87979 5.94479 6.09865 6.24818 6.26748 6.40564 6.79860 6.87449 7.32276 7.54653 7.73119 7.88205 8.29517 8.51514 8.93805 9.72552 11.09811 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.032980 B = 0.004069 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.800376 B = 6879.413596 C = 7393.499041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.152 4.152 5 C -0.146 4.146 6 C 0.107 3.893 7 H 0.067 0.933 8 C -0.168 4.168 9 H 0.109 0.891 10 C -0.162 4.162 11 C 0.043 3.957 12 H 0.097 0.903 13 N -0.662 5.662 14 C 0.075 3.925 15 C 0.012 3.988 16 C -0.602 4.602 17 H 0.048 0.952 18 C 0.015 3.985 19 N -0.913 5.913 20 Si 1.070 2.930 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 O -0.362 6.362 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.338 0.662 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.005 0.995 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.476 10.916 -20.298 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.083 0.917 4 C -0.189 4.189 5 C -0.184 4.184 6 C 0.049 3.951 7 H 0.085 0.915 8 C -0.187 4.187 9 H 0.127 0.873 10 C -0.200 4.200 11 C -0.069 4.069 12 H 0.115 0.885 13 N -0.292 5.292 14 C -0.053 4.053 15 C -0.026 4.026 16 C -0.641 4.641 17 H 0.066 0.934 18 C -0.189 4.189 19 N -0.549 5.549 20 Si 0.898 3.102 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.215 1.215 24 O -0.281 6.281 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.157 0.843 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.023 0.977 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.470 10.241 -18.383 21.095 hybrid contribution -0.193 0.950 -2.017 2.238 sum 1.277 11.191 -20.401 23.304 Atomic orbital electron populations 1.21799 0.93242 1.03004 1.02352 1.22954 0.95398 0.95314 0.85378 0.91687 1.23048 0.97856 0.99779 0.98255 1.22989 0.98107 1.01697 0.95631 1.22483 0.84540 0.95317 0.92752 0.91507 1.22652 1.02101 0.98513 0.95473 0.87289 1.23245 0.90389 1.03203 1.03181 1.22375 1.00431 0.95486 0.88558 0.88495 1.60400 1.48209 1.16862 1.03722 1.22052 0.97165 0.99060 0.87059 1.19208 0.96006 0.93074 0.94286 1.21996 1.48909 0.94745 0.98458 0.93381 1.25846 0.94959 0.94143 1.03932 1.70769 1.44328 1.14384 1.25453 0.83535 0.76312 0.75286 0.75046 1.20760 1.21431 1.21501 1.89244 1.26889 1.74293 1.37723 0.91739 0.91353 0.91732 0.90570 0.90801 0.90597 0.90427 0.89124 0.87993 0.84291 0.96102 0.92078 0.96549 0.97712 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.53 37.16 0.35 -0.98 16 2 C 0.07 0.69 3.92 -25.95 -0.10 0.58 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.15 -1.27 6.64 -25.07 -0.17 -1.44 16 5 C -0.15 -1.35 6.65 -25.07 -0.17 -1.51 16 6 C 0.11 1.25 3.45 -25.96 -0.09 1.16 16 7 H 0.07 0.73 7.96 -51.93 -0.41 0.32 16 8 C -0.17 -2.20 5.24 -90.62 -0.47 -2.68 16 9 H 0.11 1.44 7.84 -51.93 -0.41 1.03 16 10 C -0.16 -2.11 10.11 -26.73 -0.27 -2.38 16 11 C 0.04 0.69 5.95 -67.71 -0.40 0.28 16 12 H 0.10 1.63 7.90 -51.93 -0.41 1.22 16 13 N -0.66 -12.69 6.75 -106.72 -0.72 -13.41 16 14 C 0.07 1.69 5.48 -3.83 -0.02 1.67 16 15 C 0.01 0.32 4.54 -27.88 -0.13 0.19 16 16 C -0.60 -17.88 9.11 -34.44 -0.31 -18.20 16 17 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 18 C 0.01 0.45 5.46 -17.82 -0.10 0.35 16 19 N -0.91 -28.84 13.65 55.43 0.76 -28.08 16 20 Si 1.07 25.99 29.90 -169.99 -5.08 20.90 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 O -0.36 -5.00 11.01 -35.23 -0.39 -5.39 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.72 7.67 -51.93 -0.40 0.33 16 32 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.34 6.32 8.69 -39.29 -0.34 5.98 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 38 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 39 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 LS Contribution 318.95 15.07 4.81 4.81 Total: -1.00 -32.20 318.95 -9.44 -41.63 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.93 Total: 2.50 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -1.88 Total: -22.96 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.04 Total: -41.49 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.39 Total: -5.39 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.20 -9.44 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309089082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.810 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds