Wall clock time and date at job start Mon Mar 30 2020 04:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.27572 * 2 1 4 4 C 1.54950 * 110.31335 * 237.80000 * 2 1 3 5 5 C 1.55306 * 100.94218 * 204.63914 * 4 2 1 6 6 C 1.54386 * 102.25271 * 34.13402 * 5 4 2 7 7 H 1.09002 * 109.83191 * 98.15473 * 6 5 4 8 8 C 1.53002 * 109.90472 * 219.08621 * 6 5 4 9 9 N 1.46895 * 109.46941 * 184.76572 * 8 6 5 10 10 C 1.47442 * 111.00087 * 69.87620 * 9 8 6 11 11 C 1.54313 * 107.23523 * 123.25569 * 10 9 8 12 12 C 1.55137 * 103.02006 * 22.28339 * 11 10 9 13 13 H 1.09008 * 110.99208 * 82.47854 * 12 11 10 14 14 C 1.50703 * 110.99234 * 206.25325 * 12 11 10 15 15 H 1.07998 * 119.99865 * 118.54543 * 14 12 11 16 16 C 1.37873 * 120.00155 * 298.54823 * 14 12 11 17 17 N 1.31520 * 119.99983 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99999 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47261 * 60.00074 * 18 16 14 20 20 H 1.48510 * 109.47108 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47254 * 299.99684 * 18 16 14 22 22 C 1.47843 * 111.00141 * 190.71578 * 9 8 6 23 23 O 1.43241 * 107.58949 * 338.64218 * 6 5 4 24 24 H 1.09002 * 109.47623 * 299.36433 * 1 2 3 25 25 H 1.09003 * 109.47197 * 59.37179 * 1 2 3 26 26 H 1.09002 * 109.47249 * 179.36623 * 1 2 3 27 27 H 1.09002 * 111.12166 * 322.56108 * 4 2 1 28 28 H 1.08997 * 111.12456 * 86.67754 * 4 2 1 29 29 H 1.09000 * 110.84977 * 275.94122 * 5 4 2 30 30 H 1.09001 * 110.84521 * 152.32116 * 5 4 2 31 31 H 1.09002 * 109.46829 * 304.76485 * 8 6 5 32 32 H 1.09003 * 109.47041 * 64.76656 * 8 6 5 33 33 H 1.09001 * 109.88788 * 242.66203 * 10 9 8 34 34 H 1.09000 * 109.88876 * 3.68708 * 10 9 8 35 35 H 1.09006 * 110.70615 * 140.66805 * 11 10 9 36 36 H 1.08996 * 110.71077 * 263.89739 * 11 10 9 37 37 H 0.97003 * 120.00113 * 180.02562 * 17 16 14 38 38 H 1.09009 * 110.37394 * 332.46584 * 22 9 8 39 39 H 1.08998 * 110.37723 * 94.80565 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0678 -0.7743 -1.2296 5 6 3.4700 -1.2032 -0.7177 6 6 3.2112 -1.4412 0.7856 7 1 3.0624 -2.5049 0.9714 8 6 4.3986 -0.9323 1.6055 9 7 4.1944 -1.2654 3.0216 10 6 4.3139 -2.7179 3.2453 11 6 5.4137 -2.9280 4.3071 12 6 5.4590 -1.5606 5.0387 13 1 4.6793 -1.4979 5.7979 14 6 6.8178 -1.3165 5.6431 15 1 7.4078 -0.4710 5.3215 16 6 7.3076 -2.1724 6.6066 17 7 6.5889 -3.2017 6.9986 18 14 8.9921 -1.8701 7.3552 19 1 9.0091 -0.5399 8.0150 20 1 9.2837 -2.9242 8.3599 21 1 10.0225 -1.9058 6.2864 22 6 5.1834 -0.5746 3.8763 23 8 2.0285 -0.7156 1.1414 24 1 -0.3634 0.5039 0.8956 25 1 -0.3634 0.5236 -0.8843 26 1 -0.3634 -1.0276 -0.0114 27 1 1.4471 -1.6430 -1.4491 28 1 2.1489 -0.1226 -2.0996 29 1 4.1974 -0.4049 -0.8645 30 1 3.7966 -2.1217 -1.2052 31 1 5.3145 -1.4041 1.2497 32 1 4.4799 0.1490 1.4947 33 1 3.3666 -3.1162 3.6087 34 1 4.5927 -3.2145 2.3159 35 1 5.1363 -3.7251 4.9969 36 1 6.3712 -3.1432 3.8330 37 1 6.9334 -3.8038 7.6767 38 1 6.0991 -0.3816 3.3172 39 1 4.7683 0.3575 4.2597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397644032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:58 Heat of formation + Delta-G solvation = -54.730397 kcal Electronic energy + Delta-G solvation = -17585.448269 eV Core-core repulsion = 14913.279633 eV Total energy + Delta-G solvation = -2672.168635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.63178 -37.71781 -33.43874 -32.20402 -31.97668 -29.98910 -28.15645 -26.91131 -24.38318 -23.17114 -21.46775 -20.81957 -19.58793 -19.28982 -16.92867 -16.34609 -15.77497 -14.95526 -14.61117 -14.30937 -14.19433 -13.68954 -13.29375 -12.76773 -12.43174 -12.35867 -12.15989 -11.94274 -11.75100 -11.59168 -11.08303 -11.03867 -10.95878 -10.81512 -10.78114 -10.58283 -10.42835 -10.06258 -9.55018 -9.30468 -9.12215 -8.79662 -8.35899 -7.45541 -5.98986 -4.02539 3.33049 3.37715 3.40136 3.85856 4.43504 4.47759 4.64753 4.69367 4.95494 5.14110 5.26775 5.32526 5.35285 5.49455 5.54763 5.61776 5.64234 5.73248 5.82379 5.89535 5.95690 6.06249 6.14680 6.17199 6.29675 6.38628 6.56824 6.61357 6.91681 7.20746 7.24721 7.31161 7.69299 7.79603 7.85138 7.97359 8.07101 8.46616 8.99293 9.61427 11.10562 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.057454 B = 0.004631 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.226878 B = 6045.295751 C = 6091.545037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.065 0.935 4 C -0.151 4.151 5 C -0.153 4.153 6 C 0.089 3.911 7 H 0.077 0.923 8 C 0.044 3.956 9 N -0.524 5.524 10 C 0.038 3.962 11 C -0.116 4.116 12 C 0.049 3.951 13 H 0.037 0.963 14 C -0.515 4.515 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.047 3.953 23 O -0.354 6.354 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.260 0.740 38 H 0.033 0.967 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 3.378 -15.769 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 H 0.083 0.917 4 C -0.189 4.189 5 C -0.191 4.191 6 C 0.031 3.969 7 H 0.095 0.905 8 C -0.085 4.085 9 N -0.248 5.248 10 C -0.089 4.089 11 C -0.155 4.155 12 C 0.030 3.970 13 H 0.055 0.945 14 C -0.554 4.554 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.080 4.080 23 O -0.273 6.273 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.553 3.386 -15.306 17.857 hybrid contribution 1.935 -0.200 -0.058 1.947 sum -6.618 3.185 -15.364 17.029 Atomic orbital electron populations 1.21860 0.94113 1.02580 1.02089 1.22935 0.94673 0.95720 0.85425 0.91693 1.23306 0.96355 1.00747 0.98470 1.23168 0.97651 1.02508 0.95744 1.22771 0.85867 0.96293 0.92006 0.90495 1.22572 0.95028 1.00548 0.90335 1.63556 1.50062 1.07368 1.03839 1.22938 0.99810 0.88043 0.98154 1.22675 0.95198 1.01753 0.95895 1.19722 0.96711 0.89169 0.91439 0.94530 1.21020 1.01718 1.11143 1.21522 0.92706 1.24963 0.97312 0.95131 0.96387 1.69963 1.37221 1.14799 1.30656 0.86679 0.84590 0.77868 0.78956 1.20239 1.21308 1.20387 1.23163 0.91472 0.98265 0.95115 1.88606 1.41671 1.64436 1.32606 0.91808 0.91749 0.92103 0.90509 0.90365 0.90490 0.90251 0.94395 0.91259 0.91976 0.94891 0.90880 0.93554 0.93008 0.94885 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.62 37.15 0.36 -1.12 16 2 C 0.07 0.82 4.07 -25.71 -0.10 0.72 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.15 -1.44 6.57 -24.48 -0.16 -1.60 16 5 C -0.15 -1.64 6.55 -24.78 -0.16 -1.80 16 6 C 0.09 1.29 3.52 -26.00 -0.09 1.20 16 7 H 0.08 1.16 7.06 -51.93 -0.37 0.80 16 8 C 0.04 0.74 4.08 -3.83 -0.02 0.72 16 9 N -0.52 -10.69 5.13 -231.26 -1.19 -11.88 16 10 C 0.04 0.78 6.13 -2.84 -0.02 0.77 16 11 C -0.12 -2.81 5.64 -24.91 -0.14 -2.95 16 12 C 0.05 1.26 2.96 -89.64 -0.27 1.00 16 13 H 0.04 1.04 8.14 -51.92 -0.42 0.62 16 14 C -0.52 -14.42 8.55 -34.44 -0.29 -14.72 16 15 H 0.05 1.51 7.79 -52.49 -0.41 1.10 16 16 C 0.06 1.80 5.34 -17.82 -0.10 1.70 16 17 N -0.89 -25.82 12.12 55.43 0.67 -25.15 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.05 1.05 6.12 -2.30 -0.01 1.03 16 23 O -0.35 -5.62 10.67 -35.23 -0.38 -6.00 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.69 8.06 -51.93 -0.42 0.28 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.78 7.85 -51.93 -0.41 0.38 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.62 7.96 -51.93 -0.41 0.21 16 32 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.03 0.61 6.95 -51.93 -0.36 0.24 16 35 H 0.07 1.89 7.54 -51.93 -0.39 1.50 16 36 H 0.05 1.15 8.03 -51.93 -0.42 0.73 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 38 H 0.03 0.73 7.70 -51.92 -0.40 0.33 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -29.79 306.54 -9.24 -39.03 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.94 Total: -2.03 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -1.00 Total: -15.06 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.52 Total: -37.02 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.38 Total: -6.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.79 -9.24 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.696 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds