Wall clock time and date at job start Mon Mar 30 2020 04:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.27572 * 2 1 4 4 C 1.54950 * 110.31335 * 237.80000 * 2 1 3 5 5 C 1.55306 * 100.94218 * 204.63914 * 4 2 1 6 6 C 1.54386 * 102.25271 * 34.13402 * 5 4 2 7 7 H 1.09002 * 109.83191 * 98.15473 * 6 5 4 8 8 C 1.53002 * 109.90472 * 219.08621 * 6 5 4 9 9 N 1.46895 * 109.46941 * 184.76572 * 8 6 5 10 10 C 1.47442 * 111.00087 * 69.87620 * 9 8 6 11 11 C 1.54313 * 107.23523 * 123.25569 * 10 9 8 12 12 C 1.55137 * 103.02006 * 22.28339 * 11 10 9 13 13 H 1.09008 * 110.99208 * 82.47854 * 12 11 10 14 14 C 1.50703 * 110.99234 * 206.25325 * 12 11 10 15 15 H 1.07998 * 119.99865 * 118.54543 * 14 12 11 16 16 C 1.37873 * 120.00155 * 298.54823 * 14 12 11 17 17 N 1.31520 * 119.99983 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99999 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47261 * 60.00074 * 18 16 14 20 20 H 1.48510 * 109.47108 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47254 * 299.99684 * 18 16 14 22 22 C 1.47843 * 111.00141 * 190.71578 * 9 8 6 23 23 O 1.43241 * 107.58949 * 338.64218 * 6 5 4 24 24 H 1.09002 * 109.47623 * 299.36433 * 1 2 3 25 25 H 1.09003 * 109.47197 * 59.37179 * 1 2 3 26 26 H 1.09002 * 109.47249 * 179.36623 * 1 2 3 27 27 H 1.09002 * 111.12166 * 322.56108 * 4 2 1 28 28 H 1.08997 * 111.12456 * 86.67754 * 4 2 1 29 29 H 1.09000 * 110.84977 * 275.94122 * 5 4 2 30 30 H 1.09001 * 110.84521 * 152.32116 * 5 4 2 31 31 H 1.09002 * 109.46829 * 304.76485 * 8 6 5 32 32 H 1.09003 * 109.47041 * 64.76656 * 8 6 5 33 33 H 1.09001 * 109.88788 * 242.66203 * 10 9 8 34 34 H 1.09000 * 109.88876 * 3.68708 * 10 9 8 35 35 H 1.09006 * 110.70615 * 140.66805 * 11 10 9 36 36 H 1.08996 * 110.71077 * 263.89739 * 11 10 9 37 37 H 0.97003 * 120.00113 * 180.02562 * 17 16 14 38 38 H 1.09009 * 110.37394 * 332.46584 * 22 9 8 39 39 H 1.08998 * 110.37723 * 94.80565 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0678 -0.7743 -1.2296 5 6 3.4700 -1.2032 -0.7177 6 6 3.2112 -1.4412 0.7856 7 1 3.0624 -2.5049 0.9714 8 6 4.3986 -0.9323 1.6055 9 7 4.1944 -1.2654 3.0216 10 6 4.3139 -2.7179 3.2453 11 6 5.4137 -2.9280 4.3071 12 6 5.4590 -1.5606 5.0387 13 1 4.6793 -1.4979 5.7979 14 6 6.8178 -1.3165 5.6431 15 1 7.4078 -0.4710 5.3215 16 6 7.3076 -2.1724 6.6066 17 7 6.5889 -3.2017 6.9986 18 14 8.9921 -1.8701 7.3552 19 1 9.0091 -0.5399 8.0150 20 1 9.2837 -2.9242 8.3599 21 1 10.0225 -1.9058 6.2864 22 6 5.1834 -0.5746 3.8763 23 8 2.0285 -0.7156 1.1414 24 1 -0.3634 0.5039 0.8956 25 1 -0.3634 0.5236 -0.8843 26 1 -0.3634 -1.0276 -0.0114 27 1 1.4471 -1.6430 -1.4491 28 1 2.1489 -0.1226 -2.0996 29 1 4.1974 -0.4049 -0.8645 30 1 3.7966 -2.1217 -1.2052 31 1 5.3145 -1.4041 1.2497 32 1 4.4799 0.1490 1.4947 33 1 3.3666 -3.1162 3.6087 34 1 4.5927 -3.2145 2.3159 35 1 5.1363 -3.7251 4.9969 36 1 6.3712 -3.1432 3.8330 37 1 6.9334 -3.8038 7.6767 38 1 6.0991 -0.3816 3.3172 39 1 4.7683 0.3575 4.2597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397644032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:58 Heat of formation + Delta-G solvation = -73.775572 kcal Electronic energy + Delta-G solvation = -17586.274130 eV Core-core repulsion = 14913.279633 eV Total energy + Delta-G solvation = -2672.994496 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73395 -39.35511 -35.27723 -33.48314 -33.09683 -31.46205 -30.01740 -28.24317 -26.20249 -24.47169 -22.43672 -22.03520 -21.45529 -20.83779 -18.48673 -17.87062 -16.84217 -16.77576 -16.39478 -15.94921 -15.31636 -14.75699 -14.42476 -14.24960 -14.10454 -13.79802 -13.45153 -13.22173 -13.02008 -12.91345 -12.72489 -12.69838 -12.49491 -12.26061 -12.16708 -11.71835 -11.66379 -11.58416 -11.50300 -11.11573 -10.91598 -10.50548 -10.34044 -9.08789 -8.14266 -6.25995 1.41101 1.43017 1.50745 2.41741 2.87468 3.15926 3.26287 3.64664 3.81032 3.90394 4.09367 4.20131 4.31272 4.32137 4.44225 4.48333 4.53638 4.60986 4.66433 4.72226 4.81540 4.83747 4.91839 4.92183 5.02921 5.08885 5.17352 5.23643 5.29931 5.33224 5.37193 5.57679 5.79640 5.89844 6.06276 6.23337 6.35615 6.45760 6.82871 7.42033 8.94758 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.057454 B = 0.004631 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.226878 B = 6045.295751 C = 6091.545037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 H 0.066 0.934 4 C -0.140 4.140 5 C -0.146 4.146 6 C 0.087 3.913 7 H 0.068 0.932 8 C 0.043 3.957 9 N -0.534 5.534 10 C 0.051 3.949 11 C -0.106 4.106 12 C 0.038 3.962 13 H 0.000 1.000 14 C -0.537 4.537 15 H 0.055 0.945 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.959 3.041 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.060 3.940 23 O -0.388 6.388 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.262 0.738 38 H 0.036 0.964 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 3.885 -17.923 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 H 0.084 0.916 4 C -0.178 4.178 5 C -0.184 4.184 6 C 0.029 3.971 7 H 0.086 0.914 8 C -0.085 4.085 9 N -0.258 5.258 10 C -0.077 4.077 11 C -0.145 4.145 12 C 0.019 3.981 13 H 0.018 0.982 14 C -0.575 4.575 15 H 0.074 0.926 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.067 4.067 23 O -0.308 6.308 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.122 0.878 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.199 3.905 -17.480 19.698 hybrid contribution 1.764 -0.327 0.624 1.900 sum -6.435 3.578 -16.855 18.393 Atomic orbital electron populations 1.21862 0.93048 1.02640 1.02777 1.23214 0.95629 0.95716 0.85399 0.91631 1.23288 0.95271 1.01088 0.98140 1.23158 0.98691 1.03698 0.92864 1.22755 0.84704 0.95505 0.94098 0.91363 1.22706 0.96679 1.00973 0.88175 1.63535 1.49328 1.06841 1.06060 1.22786 0.98248 0.88637 0.98006 1.22458 0.95936 0.99909 0.96245 1.19680 0.94937 0.91513 0.91960 0.98219 1.21358 1.02607 1.11342 1.22201 0.92635 1.25791 1.01182 0.94783 0.96756 1.70100 1.38961 1.15552 1.31067 0.85603 0.79874 0.77910 0.78213 1.19557 1.20883 1.19450 1.22921 0.92120 0.97442 0.94244 1.88574 1.42152 1.64958 1.35158 0.93075 0.89075 0.92381 0.89866 0.87828 0.89735 0.88568 0.93609 0.90962 0.92119 0.92247 0.93387 0.94593 0.92961 0.94581 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.62 71.98 0.69 -1.94 16 2 C 0.06 1.23 4.07 31.26 0.13 1.36 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.14 -2.20 6.57 32.05 0.21 -1.99 16 5 C -0.15 -2.68 6.55 31.86 0.21 -2.47 16 6 C 0.09 2.38 3.52 31.07 0.11 2.49 16 7 H 0.07 1.95 7.06 -2.39 -0.02 1.94 16 8 C 0.04 1.38 4.08 86.30 0.35 1.73 16 9 N -0.53 -21.56 5.13 -885.56 -4.55 -26.10 16 10 C 0.05 2.08 6.13 86.64 0.53 2.61 16 11 C -0.11 -5.27 5.64 31.77 0.18 -5.09 16 12 C 0.04 2.04 2.96 -10.16 -0.03 2.01 16 13 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 14 C -0.54 -30.54 8.55 25.60 0.22 -30.32 16 15 H 0.06 3.07 7.79 -2.91 -0.02 3.05 16 16 C 0.01 0.80 5.34 84.65 0.45 1.25 16 17 N -0.92 -54.53 12.12 21.45 0.26 -54.27 16 18 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.06 2.71 6.12 86.77 0.53 3.24 16 23 O -0.39 -11.91 10.67 -148.98 -1.59 -13.50 16 24 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.08 1.22 8.06 -2.39 -0.02 1.20 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.44 7.85 -2.39 -0.02 1.42 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.40 7.96 -2.39 -0.02 1.38 16 32 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 34 H 0.06 2.10 6.95 -2.39 -0.02 2.08 16 35 H 0.05 2.57 7.54 -2.38 -0.02 2.55 16 36 H 0.04 1.81 8.03 -2.39 -0.02 1.79 16 37 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 38 H 0.04 1.59 7.70 -2.38 -0.02 1.57 16 39 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -64.94 306.54 0.72 -64.22 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.99 Total: 10.58 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 3.58 Total: -27.13 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -4.29 Total: -80.37 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.59 Total: -13.50 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -64.94 0.72 -64.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.556 kcal (2) G-P(sol) polarization free energy of solvation -64.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds