Wall clock time and date at job start Mon Mar 30 2020 04:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.42084 * 2 1 4 4 C 1.54486 * 110.36971 * 237.69154 * 2 1 3 5 5 C 1.54684 * 104.07587 * 217.10025 * 4 2 1 6 6 C 1.54478 * 103.98163 * 0.13352 * 5 4 2 7 7 H 1.09000 * 110.37354 * 264.96933 * 6 5 4 8 8 C 1.52997 * 110.37303 * 142.73705 * 6 5 4 9 9 N 1.46904 * 109.47240 * 181.54733 * 8 6 5 10 10 C 1.46904 * 110.99787 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46561 * 185.18364 * 10 9 8 12 12 C 1.50704 * 115.55153 * 297.12783 * 11 10 9 13 13 H 1.08002 * 119.99631 * 95.21422 * 12 11 10 14 14 C 1.37869 * 120.00121 * 275.22105 * 12 11 10 15 15 N 1.31515 * 120.00260 * 7.09958 * 14 12 11 16 16 Si 1.86802 * 120.00184 * 187.10283 * 14 12 11 17 17 H 1.48496 * 109.47220 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.46853 * 300.00178 * 16 14 12 19 19 H 1.48504 * 109.47140 * 59.99662 * 16 14 12 20 20 C 1.53001 * 117.50276 * 82.80469 * 11 10 9 21 21 C 1.52997 * 117.49647 * 151.46324 * 11 10 9 22 22 O 1.44424 * 110.37197 * 122.31131 * 2 1 3 23 23 H 1.08997 * 109.46544 * 299.14423 * 1 2 3 24 24 H 1.09002 * 109.46890 * 59.14330 * 1 2 3 25 25 H 1.08999 * 109.47111 * 179.14542 * 1 2 3 26 26 H 1.08996 * 110.50848 * 335.83205 * 4 2 1 27 27 H 1.09001 * 110.51013 * 98.41036 * 4 2 1 28 28 H 1.09003 * 110.61031 * 241.48607 * 5 4 2 29 29 H 1.08994 * 110.49129 * 118.72173 * 5 4 2 30 30 H 1.09005 * 109.47081 * 61.55352 * 8 6 5 31 31 H 1.08995 * 109.47382 * 301.55088 * 8 6 5 32 32 H 1.00891 * 111.00013 * 303.95939 * 9 8 6 33 33 H 1.08992 * 109.46989 * 65.18308 * 10 9 8 34 34 H 1.08996 * 109.47041 * 305.18019 * 10 9 8 35 35 H 0.97001 * 119.99975 * 355.39731 * 15 14 12 36 36 H 1.08993 * 117.49866 * 215.00259 * 20 11 10 37 37 H 1.09002 * 117.49380 * 0.02562 * 20 11 10 38 38 H 1.09007 * 117.50117 * 359.97290 * 21 11 10 39 39 H 1.08998 * 117.50215 * 144.99612 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2240 5 6 3.3206 -1.5049 -0.6863 6 6 3.3874 -1.0872 0.7994 7 1 4.0528 -0.2329 0.9239 8 6 3.8601 -2.2594 1.6615 9 7 3.8809 -1.8523 3.0728 10 6 4.3315 -2.9551 3.9323 11 6 4.2173 -2.5374 5.3997 12 6 5.0798 -1.3728 5.8131 13 1 4.6706 -0.3733 5.8195 14 6 6.3912 -1.5832 6.1829 15 7 6.9310 -2.7743 6.0427 16 14 7.4014 -0.1767 6.8832 17 1 8.7699 -0.6592 7.1988 18 1 7.4817 0.9200 5.8851 19 1 6.7558 0.3277 8.1219 20 6 2.8484 -2.6753 6.0691 21 6 3.9789 -3.6413 6.4319 22 8 2.0328 -0.7237 1.1443 23 1 -0.3632 0.5005 0.8976 24 1 -0.3633 0.5271 -0.8822 25 1 -0.3633 -1.0275 -0.0153 26 1 1.3275 -1.4919 -1.5772 27 1 2.3407 -0.0841 -2.0225 28 1 4.2142 -1.1751 -1.2163 29 1 3.1997 -2.5845 -0.7745 30 1 4.8631 -2.5554 1.3540 31 1 3.1786 -3.1007 1.5361 32 1 4.4556 -1.0336 3.2045 33 1 5.3698 -3.1941 3.7023 34 1 3.7089 -3.8319 3.7546 35 1 6.3886 -3.5203 5.7423 36 1 2.5716 -1.9236 6.8082 37 1 2.0293 -3.0640 5.4640 38 1 3.9030 -4.6651 6.0655 39 1 4.4459 -3.5252 7.4100 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398142823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:02 Heat of formation + Delta-G solvation = -37.765382 kcal Electronic energy + Delta-G solvation = -17460.861225 eV Core-core repulsion = 14789.428248 eV Total energy + Delta-G solvation = -2671.432977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45557 -37.12887 -34.54480 -32.12798 -31.79959 -31.43266 -27.76031 -25.07453 -24.32167 -22.43943 -21.27494 -21.02166 -20.72921 -19.23399 -16.48318 -16.40306 -15.92128 -15.22697 -14.26236 -14.04257 -13.84025 -13.71414 -13.67420 -13.12605 -12.67000 -12.27080 -12.19229 -12.09191 -11.62048 -11.57924 -11.28175 -10.88635 -10.83205 -10.75420 -10.63165 -10.51558 -10.26354 -10.08742 -9.53324 -9.39063 -8.42770 -8.29744 -8.21398 -7.49922 -6.29170 -4.01712 3.44721 3.47361 3.65490 3.93807 4.53558 4.56390 4.60890 4.82515 4.91516 5.13763 5.25854 5.35208 5.40341 5.49374 5.51661 5.54318 5.63666 5.71770 5.80733 5.90556 6.01139 6.03086 6.09057 6.10995 6.26073 6.36824 6.44858 6.65619 6.73706 6.79129 7.01973 7.11208 7.37912 7.41030 7.95515 8.26915 8.39439 8.51336 8.95779 9.73141 11.09867 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.005561 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.290331 B = 5033.471794 C = 5311.229559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 H 0.064 0.936 4 C -0.150 4.150 5 C -0.151 4.151 6 C 0.081 3.919 7 H 0.065 0.935 8 C 0.065 3.935 9 N -0.669 5.669 10 C 0.102 3.898 11 C 0.028 3.972 12 C -0.567 4.567 13 H 0.053 0.947 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 1.065 2.935 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.288 1.288 20 C -0.183 4.183 21 C -0.187 4.187 22 O -0.344 6.344 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.348 0.652 33 H 0.025 0.975 34 H 0.039 0.961 35 H 0.274 0.726 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 3.098 -13.595 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.005 3.995 3 H 0.082 0.918 4 C -0.187 4.187 5 C -0.189 4.189 6 C 0.023 3.977 7 H 0.083 0.917 8 C -0.065 4.065 9 N -0.301 5.301 10 C -0.027 4.027 11 C 0.028 3.972 12 C -0.605 4.605 13 H 0.071 0.929 14 C -0.181 4.181 15 N -0.544 5.544 16 Si 0.894 3.106 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.215 1.215 20 C -0.220 4.220 21 C -0.225 4.225 22 O -0.263 6.263 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.167 0.833 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.013 3.314 -12.757 14.930 hybrid contribution -0.483 -0.454 -0.936 1.147 sum -7.496 2.860 -13.693 15.870 Atomic orbital electron populations 1.21766 0.93537 1.02693 1.02128 1.22959 0.95222 0.95547 0.85788 0.91841 1.23019 0.97701 0.99657 0.98362 1.22999 0.98234 1.01500 0.96186 1.22976 0.85220 0.97103 0.92440 0.91695 1.21983 0.98449 0.96107 0.89979 1.60306 1.59183 1.08109 1.02457 1.21501 0.96079 0.91358 0.93761 1.19019 0.94178 0.95874 0.88166 1.21296 0.97748 0.92549 1.48922 0.92922 1.25755 0.95874 1.01673 0.94791 1.70733 1.38690 1.01278 1.43721 0.83596 0.76023 0.74497 0.76469 1.20977 1.21561 1.21491 1.22737 0.92504 1.02524 1.04285 1.22784 1.04264 0.93737 1.01686 1.89342 1.26399 1.73867 1.36699 0.91772 0.91668 0.91955 0.90817 0.91001 0.90749 0.90647 0.94865 0.91240 0.83277 0.95715 0.94297 0.91463 0.90623 0.91443 0.91888 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.52 37.16 0.35 -1.15 16 2 C 0.06 0.77 3.92 -25.95 -0.10 0.67 16 3 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 4 C -0.15 -1.52 6.64 -25.07 -0.17 -1.69 16 5 C -0.15 -1.71 6.65 -25.07 -0.17 -1.88 16 6 C 0.08 1.20 3.48 -25.96 -0.09 1.11 16 7 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 8 C 0.06 1.10 5.30 -3.82 -0.02 1.08 16 9 N -0.67 -14.03 6.41 -113.78 -0.73 -14.76 16 10 C 0.10 2.35 5.46 -3.82 -0.02 2.33 16 11 C 0.03 0.72 1.14 -155.66 -0.18 0.54 16 12 C -0.57 -15.74 8.24 -34.44 -0.28 -16.02 16 13 H 0.05 1.49 7.82 -52.49 -0.41 1.08 16 14 C 0.02 0.68 5.39 -17.82 -0.10 0.58 16 15 N -0.91 -26.85 13.57 55.43 0.75 -26.10 16 16 Si 1.07 25.02 29.91 -169.99 -5.08 19.93 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 20 C -0.18 -4.29 9.96 -26.70 -0.27 -4.56 16 21 C -0.19 -4.50 8.73 -26.70 -0.23 -4.73 16 22 O -0.34 -5.67 10.98 -35.23 -0.39 -6.06 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 26 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.83 7.87 -51.93 -0.41 0.42 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.35 7.68 8.22 -39.30 -0.32 7.35 16 33 H 0.02 0.61 7.83 -51.93 -0.41 0.20 16 34 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.27 8.07 6.20 -40.82 -0.25 7.82 16 36 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 39 H 0.08 2.07 8.14 -51.93 -0.42 1.64 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -30.14 316.32 -8.87 -39.01 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -6.92 Total: 6.92 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.27 Total: -23.72 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.02 Total: -40.86 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.39 Total: -6.06 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.14 -8.87 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398142823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.250 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds