Wall clock time and date at job start Mon Mar 30 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.48717 * 2 1 4 4 C 1.53094 * 109.47835 * 120.02829 * 2 1 3 5 5 C 1.53175 * 109.16158 * 62.37592 * 4 2 1 6 6 C 1.53172 * 109.03839 * 56.97804 * 5 4 2 7 7 H 1.09005 * 109.52258 * 62.99170 * 6 5 4 8 8 N 1.46903 * 109.52377 * 183.11425 * 6 5 4 9 9 C 1.46901 * 110.99976 * 205.00498 * 8 6 5 10 10 C 1.52999 * 109.47001 * 185.36481 * 9 8 6 11 11 C 1.50699 * 115.55054 * 65.07235 * 10 9 8 12 12 H 1.08005 * 120.00262 * 264.81105 * 11 10 9 13 13 C 1.37883 * 119.99848 * 84.81001 * 11 10 9 14 14 N 1.31508 * 120.00076 * 352.86606 * 13 11 10 15 15 Si 1.86803 * 119.99775 * 172.86655 * 13 11 10 16 16 H 1.48497 * 109.47170 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47325 * 120.00397 * 15 13 11 18 18 H 1.48502 * 109.46975 * 240.00145 * 15 13 11 19 19 C 1.52995 * 117.50062 * 279.40159 * 10 9 8 20 20 C 1.52998 * 117.50163 * 210.74207 * 10 9 8 21 21 C 1.53090 * 109.16500 * 303.01958 * 6 5 4 22 22 O 1.42901 * 109.48085 * 239.97465 * 2 1 3 23 23 H 1.08997 * 109.47102 * 299.97621 * 1 2 3 24 24 H 1.09001 * 109.46981 * 59.97010 * 1 2 3 25 25 H 1.08991 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.51906 * 302.46469 * 4 2 1 27 27 H 1.09004 * 109.52087 * 182.28087 * 4 2 1 28 28 H 1.09007 * 109.54358 * 297.10909 * 5 4 2 29 29 H 1.08997 * 109.61361 * 176.89274 * 5 4 2 30 30 H 1.00902 * 110.99498 * 328.95119 * 8 6 5 31 31 H 1.08998 * 109.47576 * 65.36235 * 9 8 6 32 32 H 1.09007 * 109.46777 * 305.36326 * 9 8 6 33 33 H 0.96997 * 120.00055 * 179.97438 * 14 13 11 34 34 H 1.09003 * 117.49983 * 0.02562 * 19 10 9 35 35 H 1.08999 * 117.50084 * 145.02015 * 19 10 9 36 36 H 1.09001 * 117.50085 * 214.98257 * 20 10 9 37 37 H 1.09009 * 117.49325 * 359.97438 * 20 10 9 38 38 H 1.09003 * 109.48367 * 177.59041 * 21 6 5 39 39 H 1.08998 * 109.48137 * 297.62736 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 1.5757 -2.1813 1.2121 6 6 2.0764 -2.8322 -0.0809 7 1 3.1664 -2.8410 -0.0858 8 7 1.5739 -4.2101 -0.1634 9 6 2.4480 -5.0398 -1.0034 10 6 1.8244 -6.4264 -1.1747 11 6 0.5202 -6.4638 -1.9289 12 1 -0.4158 -6.4506 -1.3901 13 6 0.5219 -6.5148 -3.3068 14 7 1.6517 -6.3896 -3.9681 15 14 -1.0808 -6.7619 -4.2341 16 1 -2.2007 -6.8750 -3.2656 17 1 -1.3171 -5.6028 -5.1318 18 1 -0.9984 -8.0050 -5.0423 19 6 2.0107 -7.4304 -0.0355 20 6 2.7754 -7.6121 -1.3489 21 6 1.5645 -2.0284 -1.2790 22 8 2.0066 -0.6741 -1.1664 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5143 -0.8897 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6420 -0.2357 2.1398 27 1 3.1298 -0.6874 1.2710 28 1 0.4866 -2.2179 1.2408 29 1 1.9812 -2.7167 2.0706 30 1 1.4684 -4.6121 0.7561 31 1 3.4240 -5.1366 -0.5278 32 1 2.5649 -4.5707 -1.9804 33 1 1.6529 -6.4259 -4.9374 34 1 2.5772 -7.1031 0.8363 35 1 1.1901 -8.1183 0.1683 36 1 2.4576 -8.4195 -2.0088 37 1 3.8455 -7.4043 -1.3419 38 1 1.9531 -2.4622 -2.2005 39 1 0.4750 -2.0549 -1.2958 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402391288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:55 Heat of formation + Delta-G solvation = -30.944202 kcal Electronic energy + Delta-G solvation = -17931.021169 eV Core-core repulsion = 15259.883980 eV Total energy + Delta-G solvation = -2671.137188 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60413 -36.95215 -34.71849 -32.96674 -31.81545 -30.03120 -27.58825 -25.64227 -24.61261 -23.53552 -21.71601 -20.96442 -19.21946 -18.71632 -16.39087 -16.18039 -15.74287 -15.13673 -14.53104 -14.42322 -14.25463 -13.47575 -13.26347 -12.82986 -12.67036 -12.47341 -12.28038 -12.14780 -11.73467 -11.20773 -11.06047 -10.92826 -10.86131 -10.63258 -10.62111 -10.39435 -10.13842 -9.81369 -9.43553 -9.20906 -8.74906 -8.34423 -8.03264 -7.54879 -5.93033 -3.94137 3.34950 3.43356 3.47591 4.05591 4.49976 4.70131 4.90331 4.97650 5.03383 5.24136 5.29799 5.37521 5.45193 5.50341 5.66174 5.72721 5.79867 5.90017 5.97710 6.10091 6.15077 6.20462 6.26279 6.35409 6.46669 6.55147 6.55838 6.65431 6.75844 6.89892 7.14001 7.44909 7.51813 7.62051 7.98293 8.00634 8.16912 8.58815 9.05066 9.68825 11.16940 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.024389 B = 0.007149 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.799244 B = 3915.794514 C = 4573.560480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.085 3.915 3 H 0.095 0.905 4 C -0.145 4.145 5 C -0.124 4.124 6 C 0.058 3.942 7 H 0.040 0.960 8 N -0.662 5.662 9 C 0.107 3.893 10 C 0.053 3.947 11 C -0.469 4.469 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.885 5.885 15 Si 0.886 3.114 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.287 1.287 19 C -0.216 4.216 20 C -0.160 4.160 21 C 0.069 3.931 22 O -0.382 6.382 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.332 0.668 31 H -0.006 1.006 32 H 0.078 0.922 33 H 0.257 0.743 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 9.840 8.956 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.027 3.973 3 H 0.113 0.887 4 C -0.184 4.184 5 C -0.162 4.162 6 C -0.053 4.053 7 H 0.058 0.942 8 N -0.294 5.294 9 C -0.022 4.022 10 C 0.052 3.948 11 C -0.507 4.507 12 H 0.078 0.922 13 C -0.135 4.135 14 N -0.522 5.522 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.213 1.213 19 C -0.253 4.253 20 C -0.198 4.198 21 C -0.008 4.008 22 O -0.301 6.301 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.012 0.988 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.251 10.081 8.106 12.938 hybrid contribution -0.118 -0.495 0.200 0.546 sum 0.134 9.586 8.306 12.685 Atomic orbital electron populations 1.22463 0.96522 1.03416 1.02116 1.22102 0.93522 0.96029 0.85659 0.88739 1.22170 1.01498 0.96300 0.98382 1.21809 1.01985 0.95088 0.97345 1.22035 0.97190 0.91012 0.95049 0.94223 1.60223 1.51833 0.99991 1.17336 1.21610 0.89733 0.94607 0.96203 1.18831 0.95838 0.85684 0.94456 1.20336 0.90453 1.49687 0.90208 0.92231 1.24936 0.95798 0.95121 0.97606 1.70014 1.25334 1.49858 1.07040 0.86629 0.84432 0.77551 0.79921 1.19819 1.21207 1.21282 1.22984 1.03147 1.07395 0.91792 1.22528 0.95324 1.03975 0.97980 1.22605 0.99655 0.79953 0.98558 1.87978 1.73988 1.25516 1.42580 0.91998 0.92036 0.91083 0.91193 0.91421 0.90679 0.92059 0.85015 0.98799 0.90413 0.93368 0.92253 0.90531 0.90093 0.92176 0.88527 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 8.65 37.16 0.32 -1.85 16 2 C 0.08 1.06 3.91 -26.68 -0.10 0.96 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.15 -1.68 5.64 -26.59 -0.15 -1.83 16 5 C -0.12 -1.65 4.99 -26.55 -0.13 -1.78 16 6 C 0.06 0.96 2.69 -67.58 -0.18 0.78 16 7 H 0.04 0.69 7.86 -51.93 -0.41 0.29 16 8 N -0.66 -12.74 6.19 -106.58 -0.66 -13.40 16 9 C 0.11 2.38 5.29 -3.82 -0.02 2.36 16 10 C 0.05 1.28 1.53 -155.66 -0.24 1.04 16 11 C -0.47 -12.71 8.73 -34.44 -0.30 -13.01 16 12 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 13 C 0.07 1.84 5.39 -17.82 -0.10 1.75 16 14 N -0.88 -25.11 12.97 55.43 0.72 -24.39 16 15 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 C -0.22 -4.68 9.96 -26.70 -0.27 -4.94 16 20 C -0.16 -3.78 9.47 -26.70 -0.25 -4.03 16 21 C 0.07 1.21 6.00 37.20 0.22 1.43 16 22 O -0.38 -6.21 10.60 -35.23 -0.37 -6.58 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.92 4.97 -51.93 -0.26 0.66 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.00 6.62 -51.92 -0.34 0.66 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.33 5.97 8.42 -39.29 -0.33 5.63 16 31 H -0.01 -0.13 8.09 -51.93 -0.42 -0.55 16 32 H 0.08 1.94 7.40 -51.92 -0.38 1.56 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 37 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 38 H 0.10 1.89 7.47 -51.93 -0.39 1.50 16 39 H 0.06 1.11 6.34 -51.93 -0.33 0.78 16 LS Contribution 307.58 15.07 4.64 4.64 Total: -1.00 -28.17 307.58 -8.53 -36.71 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.64 Total: 5.74 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -1.20 Total: -19.13 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.06 Total: -37.79 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.37 Total: -6.58 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.17 -8.53 -36.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402391288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.765 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds