Wall clock time and date at job start Mon Mar 30 2020 04:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.48717 * 2 1 4 4 C 1.53094 * 109.47835 * 120.02829 * 2 1 3 5 5 C 1.53175 * 109.16158 * 62.37592 * 4 2 1 6 6 C 1.53172 * 109.03839 * 56.97804 * 5 4 2 7 7 H 1.09005 * 109.52258 * 62.99170 * 6 5 4 8 8 N 1.46903 * 109.52377 * 183.11425 * 6 5 4 9 9 C 1.46901 * 110.99976 * 205.00498 * 8 6 5 10 10 C 1.52999 * 109.47001 * 185.36481 * 9 8 6 11 11 C 1.50699 * 115.55054 * 65.07235 * 10 9 8 12 12 H 1.08005 * 120.00262 * 264.81105 * 11 10 9 13 13 C 1.37883 * 119.99848 * 84.81001 * 11 10 9 14 14 N 1.31508 * 120.00076 * 352.86606 * 13 11 10 15 15 Si 1.86803 * 119.99775 * 172.86655 * 13 11 10 16 16 H 1.48497 * 109.47170 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47325 * 120.00397 * 15 13 11 18 18 H 1.48502 * 109.46975 * 240.00145 * 15 13 11 19 19 C 1.52995 * 117.50062 * 279.40159 * 10 9 8 20 20 C 1.52998 * 117.50163 * 210.74207 * 10 9 8 21 21 C 1.53090 * 109.16500 * 303.01958 * 6 5 4 22 22 O 1.42901 * 109.48085 * 239.97465 * 2 1 3 23 23 H 1.08997 * 109.47102 * 299.97621 * 1 2 3 24 24 H 1.09001 * 109.46981 * 59.97010 * 1 2 3 25 25 H 1.08991 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.51906 * 302.46469 * 4 2 1 27 27 H 1.09004 * 109.52087 * 182.28087 * 4 2 1 28 28 H 1.09007 * 109.54358 * 297.10909 * 5 4 2 29 29 H 1.08997 * 109.61361 * 176.89274 * 5 4 2 30 30 H 1.00902 * 110.99498 * 328.95119 * 8 6 5 31 31 H 1.08998 * 109.47576 * 65.36235 * 9 8 6 32 32 H 1.09007 * 109.46777 * 305.36326 * 9 8 6 33 33 H 0.96997 * 120.00055 * 179.97438 * 14 13 11 34 34 H 1.09003 * 117.49983 * 0.02562 * 19 10 9 35 35 H 1.08999 * 117.50084 * 145.02015 * 19 10 9 36 36 H 1.09001 * 117.50085 * 214.98257 * 20 10 9 37 37 H 1.09009 * 117.49325 * 359.97438 * 20 10 9 38 38 H 1.09003 * 109.48367 * 177.59041 * 21 6 5 39 39 H 1.08998 * 109.48137 * 297.62736 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 1.5757 -2.1813 1.2121 6 6 2.0764 -2.8322 -0.0809 7 1 3.1664 -2.8410 -0.0858 8 7 1.5739 -4.2101 -0.1634 9 6 2.4480 -5.0398 -1.0034 10 6 1.8244 -6.4264 -1.1747 11 6 0.5202 -6.4638 -1.9289 12 1 -0.4158 -6.4506 -1.3901 13 6 0.5219 -6.5148 -3.3068 14 7 1.6517 -6.3896 -3.9681 15 14 -1.0808 -6.7619 -4.2341 16 1 -2.2007 -6.8750 -3.2656 17 1 -1.3171 -5.6028 -5.1318 18 1 -0.9984 -8.0050 -5.0423 19 6 2.0107 -7.4304 -0.0355 20 6 2.7754 -7.6121 -1.3489 21 6 1.5645 -2.0284 -1.2790 22 8 2.0066 -0.6741 -1.1664 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5143 -0.8897 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6420 -0.2357 2.1398 27 1 3.1298 -0.6874 1.2710 28 1 0.4866 -2.2179 1.2408 29 1 1.9812 -2.7167 2.0706 30 1 1.4684 -4.6121 0.7561 31 1 3.4240 -5.1366 -0.5278 32 1 2.5649 -4.5707 -1.9804 33 1 1.6529 -6.4259 -4.9374 34 1 2.5772 -7.1031 0.8363 35 1 1.1901 -8.1183 0.1683 36 1 2.4576 -8.4195 -2.0088 37 1 3.8455 -7.4043 -1.3419 38 1 1.9531 -2.4622 -2.2005 39 1 0.4750 -2.0549 -1.2958 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402391288.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:55 Heat of formation + Delta-G solvation = -48.530212 kcal Electronic energy + Delta-G solvation = -17931.783755 eV Core-core repulsion = 15259.883980 eV Total energy + Delta-G solvation = -2671.899775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80125 -38.71750 -36.20388 -34.11285 -33.88166 -31.31470 -28.75513 -27.62689 -26.24205 -24.72187 -23.12851 -22.66390 -20.95351 -20.08362 -18.06286 -17.46468 -17.18417 -16.58558 -16.27222 -15.89455 -15.71872 -15.06462 -14.84861 -14.27672 -13.98286 -13.72997 -13.63723 -13.41194 -13.06640 -12.95248 -12.88722 -12.54366 -12.36175 -12.19168 -12.03709 -11.93050 -11.72383 -11.26489 -11.01523 -10.74069 -10.41845 -10.34880 -9.91043 -9.10606 -8.03235 -6.09006 1.41013 1.44218 1.54223 2.47922 2.83914 3.26934 3.33914 3.63694 3.81762 3.91112 3.99799 4.07233 4.23649 4.39079 4.42052 4.53875 4.60788 4.64830 4.69437 4.75266 4.79675 4.88543 4.93120 4.99838 5.01651 5.07337 5.16190 5.18863 5.26847 5.29785 5.47097 5.63941 5.75693 5.89060 6.18279 6.43352 6.52479 6.74424 6.94712 7.56176 9.06031 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.024389 B = 0.007149 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.799244 B = 3915.794514 C = 4573.560480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 H 0.117 0.883 4 C -0.139 4.139 5 C -0.118 4.118 6 C 0.061 3.939 7 H 0.031 0.969 8 N -0.669 5.669 9 C 0.124 3.876 10 C 0.025 3.975 11 C -0.477 4.477 12 H 0.049 0.951 13 C 0.021 3.979 14 N -0.912 5.912 15 Si 0.942 3.058 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.284 1.284 19 C -0.185 4.185 20 C -0.169 4.169 21 C 0.078 3.922 22 O -0.400 6.400 23 H 0.089 0.911 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.342 0.658 31 H 0.004 0.996 32 H 0.040 0.960 33 H 0.255 0.745 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 10.828 11.089 15.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.016 3.984 3 H 0.135 0.865 4 C -0.177 4.177 5 C -0.156 4.156 6 C -0.049 4.049 7 H 0.049 0.951 8 N -0.301 5.301 9 C -0.006 4.006 10 C 0.024 3.976 11 C -0.516 4.516 12 H 0.068 0.932 13 C -0.178 4.178 14 N -0.551 5.551 15 Si 0.769 3.231 16 H -0.193 1.193 17 H -0.213 1.213 18 H -0.210 1.210 19 C -0.222 4.222 20 C -0.208 4.208 21 C 0.000 4.000 22 O -0.319 6.319 23 H 0.108 0.892 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.161 0.839 31 H 0.022 0.978 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.251 11.070 10.261 15.097 hybrid contribution 0.037 -0.750 -0.438 0.869 sum -0.213 10.321 9.823 14.250 Atomic orbital electron populations 1.22429 0.95776 1.02619 1.03291 1.22476 0.94281 0.96806 0.84796 0.86517 1.22157 1.01594 0.94933 0.98997 1.21780 1.02035 0.96220 0.95541 1.22030 0.96625 0.89608 0.96672 0.95095 1.60080 1.51538 1.00909 1.17611 1.21229 0.90522 0.93659 0.95149 1.18936 0.95266 0.87015 0.96368 1.20561 0.91312 1.49055 0.90629 0.93248 1.25579 0.98414 0.95250 0.98522 1.70118 1.26961 1.51014 1.07007 0.85749 0.81333 0.77280 0.78721 1.19257 1.21281 1.20994 1.22971 1.02422 1.05229 0.91609 1.22451 0.95863 1.03128 0.99317 1.22319 0.98897 0.81089 0.97657 1.87946 1.74421 1.24670 1.44839 0.89213 0.92526 0.92787 0.87989 0.91419 0.90564 0.90481 0.83856 0.97846 0.94102 0.93589 0.89228 0.90427 0.92427 0.91232 0.92007 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.86 8.65 71.98 0.62 -3.24 16 2 C 0.07 1.67 3.91 30.63 0.12 1.79 16 3 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 4 C -0.14 -2.75 5.64 30.68 0.17 -2.57 16 5 C -0.12 -2.84 4.99 30.71 0.15 -2.68 16 6 C 0.06 1.99 2.69 45.00 0.12 2.11 16 7 H 0.03 1.07 7.86 -2.38 -0.02 1.05 16 8 N -0.67 -25.42 6.19 -491.10 -3.04 -28.46 16 9 C 0.12 5.55 5.29 86.30 0.46 6.00 16 10 C 0.02 1.21 1.53 -52.93 -0.08 1.13 16 11 C -0.48 -26.13 8.73 25.60 0.22 -25.90 16 12 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 13 C 0.02 1.18 5.39 84.66 0.46 1.64 16 14 N -0.91 -53.06 12.97 21.45 0.28 -52.79 16 15 Si 0.94 44.58 29.54 68.60 2.03 46.61 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 C -0.19 -7.70 9.96 30.62 0.30 -7.39 16 20 C -0.17 -7.98 9.47 30.62 0.29 -7.69 16 21 C 0.08 2.78 6.00 72.01 0.43 3.21 16 22 O -0.40 -12.86 10.60 -148.98 -1.58 -14.44 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.32 4.97 -2.39 -0.01 1.31 16 26 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.08 1.85 6.62 -2.38 -0.02 1.83 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.34 11.70 8.42 -89.69 -0.76 10.95 16 31 H 0.00 0.15 8.09 -2.39 -0.02 0.13 16 32 H 0.04 2.12 7.40 -2.38 -0.02 2.10 16 33 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 38 H 0.06 2.59 7.47 -2.39 -0.02 2.57 16 39 H 0.06 2.02 6.34 -2.39 -0.02 2.00 16 Total: -1.00 -61.20 307.58 1.22 -59.98 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.26 Total: 22.70 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 3.27 Total: -33.61 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -2.76 Total: -81.25 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.58 Total: -14.44 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -61.20 1.22 -59.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402391288.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.450 kcal (2) G-P(sol) polarization free energy of solvation -61.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds