Wall clock time and date at job start Mon Mar 30 2020 03:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47350 * 2 1 4 4 H 1.08997 * 109.86454 * 306.00024 * 3 2 1 5 5 C 1.54097 * 109.87884 * 185.00070 * 3 2 1 6 6 C 1.54814 * 104.30460 * 238.32675 * 5 3 2 7 7 H 1.08993 * 110.90871 * 97.38198 * 6 5 3 8 8 N 1.46899 * 110.90810 * 220.99222 * 6 5 3 9 9 C 1.46900 * 110.99770 * 205.00006 * 8 6 5 10 10 C 1.53003 * 109.47254 * 174.71627 * 9 8 6 11 11 C 1.50703 * 115.54552 * 65.16510 * 10 9 8 12 12 H 1.08001 * 120.00406 * 265.02920 * 11 10 9 13 13 C 1.37883 * 120.00037 * 85.04054 * 11 10 9 14 14 N 1.31513 * 119.99839 * 353.13583 * 13 11 10 15 15 Si 1.86802 * 119.99950 * 173.13688 * 13 11 10 16 16 H 1.48502 * 109.46828 * 89.99973 * 15 13 11 17 17 H 1.48501 * 109.46890 * 209.99735 * 15 13 11 18 18 H 1.48499 * 109.47192 * 329.99683 * 15 13 11 19 19 C 1.52994 * 117.49988 * 279.50025 * 10 9 8 20 20 C 1.52993 * 117.50039 * 210.83551 * 10 9 8 21 21 C 1.55229 * 101.98580 * 339.25830 * 6 5 3 22 22 O 1.43737 * 110.00535 * 67.08818 * 3 2 1 23 23 H 1.09002 * 109.46703 * 60.00461 * 1 2 3 24 24 H 1.08998 * 109.47167 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47469 * 300.00568 * 1 2 3 26 26 H 1.08997 * 109.47469 * 239.99432 * 2 1 3 27 27 H 1.09002 * 109.46703 * 119.99539 * 2 1 3 28 28 H 1.09003 * 110.48767 * 357.06660 * 5 3 2 29 29 H 1.09000 * 110.49218 * 119.58205 * 5 3 2 30 30 H 1.00900 * 111.00733 * 81.03872 * 8 6 5 31 31 H 1.08999 * 109.47280 * 294.71509 * 9 8 6 32 32 H 1.08997 * 109.47549 * 54.71396 * 9 8 6 33 33 H 0.96998 * 120.00192 * 185.04919 * 14 13 11 34 34 H 1.09006 * 117.49852 * 359.97438 * 19 10 9 35 35 H 1.09000 * 117.50079 * 145.02178 * 19 10 9 36 36 H 1.09007 * 117.50054 * 214.97795 * 20 10 9 37 37 H 1.08993 * 117.50000 * 359.97438 * 20 10 9 38 38 H 1.09000 * 110.52340 * 278.38570 * 21 6 5 39 39 H 1.08992 * 110.64454 * 155.43421 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9925 -0.8293 5 6 3.5758 1.4552 -0.1263 6 6 4.0573 2.2086 1.1375 7 1 4.3510 1.5084 1.9195 8 7 5.1601 3.1235 0.8141 9 6 5.9946 3.3803 1.9955 10 6 7.2030 4.2276 1.5919 11 6 6.8884 5.6208 1.1111 12 1 6.7853 5.8169 0.0541 13 6 6.7324 6.6452 2.0207 14 7 6.7235 6.3844 3.3097 15 14 6.5335 8.4035 1.4221 16 1 5.0920 8.6972 1.2192 17 1 7.0912 9.3368 2.4336 18 1 7.2592 8.5743 0.1378 19 6 8.3863 3.5067 0.9431 20 6 8.5002 4.0276 2.3780 21 6 2.7838 2.9952 1.5487 22 8 1.7082 2.0813 1.2441 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.9662 0.4375 -0.1358 29 1 3.8801 1.9880 -1.0272 30 1 4.8118 3.9859 0.4230 31 1 5.4099 3.9148 2.7441 32 1 6.3377 2.4329 2.4110 33 1 6.5409 7.0928 3.9466 34 1 8.3040 2.4287 0.8041 35 1 8.9376 4.0403 0.1688 36 1 9.1265 4.9037 2.5470 37 1 8.4928 3.2928 3.1829 38 1 2.6910 3.9073 0.9591 39 1 2.8016 3.2256 2.6138 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594939097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:00 Heat of formation + Delta-G solvation = -51.364110 kcal Electronic energy + Delta-G solvation = -17506.025721 eV Core-core repulsion = 14834.003059 eV Total energy + Delta-G solvation = -2672.022662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68061 -38.61840 -35.80339 -34.40335 -33.95401 -31.31968 -28.76780 -27.54932 -25.68622 -24.33937 -22.85107 -22.22818 -21.58762 -20.91456 -18.00137 -17.39259 -16.88125 -16.62619 -16.49956 -15.72536 -15.60599 -14.92825 -14.51048 -14.28346 -14.14129 -14.01402 -13.46943 -13.30567 -13.02032 -12.89761 -12.85017 -12.48123 -12.31669 -12.29385 -11.98524 -11.85067 -11.66512 -11.55309 -11.23799 -10.72248 -10.65258 -10.39116 -9.93665 -9.10880 -8.07759 -6.18755 1.40542 1.44443 1.52699 2.43396 2.80012 3.20590 3.38791 3.69911 3.75073 3.80218 4.00410 4.11258 4.25800 4.36343 4.37232 4.49548 4.62767 4.65627 4.73947 4.75127 4.83389 4.92490 4.98951 5.00344 5.07714 5.11553 5.17121 5.19274 5.29046 5.30619 5.45812 5.67972 5.68838 5.81042 5.93487 6.34029 6.48878 6.59416 6.90105 7.49542 8.99477 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029434 B = 0.005734 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.066552 B = 4881.680367 C = 5420.366701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.070 3.930 4 H 0.070 0.930 5 C -0.133 4.133 6 C 0.057 3.943 7 H 0.082 0.918 8 N -0.662 5.662 9 C 0.120 3.880 10 C 0.025 3.975 11 C -0.502 4.502 12 H 0.053 0.947 13 C 0.028 3.972 14 N -0.908 5.908 15 Si 0.944 3.056 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.270 1.270 19 C -0.177 4.177 20 C -0.169 4.169 21 C 0.022 3.978 22 O -0.388 6.388 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.093 0.907 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.343 0.657 31 H 0.007 0.993 32 H 0.047 0.953 33 H 0.258 0.742 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 -10.562 -5.958 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.012 3.988 4 H 0.087 0.913 5 C -0.171 4.171 6 C -0.054 4.054 7 H 0.100 0.900 8 N -0.293 5.293 9 C -0.010 4.010 10 C 0.024 3.976 11 C -0.540 4.540 12 H 0.071 0.929 13 C -0.173 4.173 14 N -0.546 5.546 15 Si 0.771 3.229 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.195 1.195 19 C -0.214 4.214 20 C -0.207 4.207 21 C -0.056 4.056 22 O -0.307 6.307 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.162 0.838 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.295 -11.005 -5.898 14.990 hybrid contribution -0.320 1.985 0.655 2.115 sum -8.615 -9.020 -5.243 13.530 Atomic orbital electron populations 1.21711 0.95175 1.02072 1.01607 1.21732 0.96863 0.93733 1.03263 1.22984 0.94369 0.94904 0.86513 0.91256 1.22928 0.94060 1.01902 0.98215 1.23189 0.89453 0.95137 0.97623 0.89983 1.60469 1.20450 1.18599 1.29793 1.21225 0.94034 0.95619 0.90086 1.18903 0.86249 0.93621 0.98778 1.20680 1.48732 0.92126 0.92481 0.92861 1.25623 0.94815 1.01871 0.94947 1.70091 1.49207 1.33679 1.01596 0.85770 0.78262 0.80863 0.78047 1.20172 1.21490 1.19470 1.22844 1.05281 0.98598 0.94700 1.22457 1.04380 1.00494 0.93392 1.24287 0.87188 0.93054 1.01099 1.88824 1.43794 1.57197 1.40905 0.92405 0.91441 0.93839 0.88831 0.91737 0.89145 0.89931 0.83771 0.97461 0.93475 0.93289 0.89561 0.91002 0.92614 0.91137 0.92467 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.83 71.98 0.71 -1.96 16 2 C -0.12 -2.26 5.42 30.59 0.17 -2.09 16 3 C 0.07 1.67 3.40 30.96 0.11 1.77 16 4 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.13 -3.30 6.38 31.58 0.20 -3.10 16 6 C 0.06 1.77 3.47 46.30 0.16 1.93 16 7 H 0.08 2.57 7.75 -2.39 -0.02 2.55 16 8 N -0.66 -24.51 6.32 -484.46 -3.06 -27.57 16 9 C 0.12 5.18 5.46 86.30 0.47 5.65 16 10 C 0.03 1.20 1.56 -52.93 -0.08 1.12 16 11 C -0.50 -26.40 8.33 25.60 0.21 -26.19 16 12 H 0.05 2.81 7.82 -2.91 -0.02 2.78 16 13 C 0.03 1.48 5.39 84.66 0.46 1.93 16 14 N -0.91 -50.91 12.94 21.45 0.28 -50.63 16 15 Si 0.94 42.57 29.55 68.60 2.03 44.60 16 16 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C -0.18 -7.59 9.96 30.62 0.30 -7.28 16 20 C -0.17 -7.94 9.45 30.62 0.29 -7.65 16 21 C 0.02 0.70 7.32 72.75 0.53 1.23 16 22 O -0.39 -11.65 10.85 -148.98 -1.62 -13.27 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.04 0.92 7.91 -2.39 -0.02 0.90 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.98 7.70 -2.39 -0.02 1.96 16 29 H 0.08 2.08 8.06 -2.39 -0.02 2.06 16 30 H 0.34 13.47 7.78 -89.69 -0.70 12.77 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.05 1.93 7.91 -2.39 -0.02 1.91 16 33 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 34 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 35 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.06 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.06 1.83 7.77 -2.39 -0.02 1.81 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -56.68 317.51 1.46 -55.22 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.30 Total: 26.27 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 3.53 Total: -34.63 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -2.78 Total: -78.20 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.62 Total: -13.27 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -56.68 1.46 -55.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594939097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.857 kcal (2) G-P(sol) polarization free energy of solvation -56.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds