Wall clock time and date at job start Mon Mar 30 2020 03:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00186 * 2 1 4 4 N 1.46908 * 109.47129 * 124.05050 * 3 2 1 5 5 C 1.46904 * 110.99849 * 63.84996 * 4 3 2 6 6 C 1.50702 * 109.46849 * 66.04448 * 5 4 3 7 7 H 1.07997 * 120.00101 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99522 * 179.72424 * 6 5 4 9 9 N 1.31518 * 119.99884 * 180.27952 * 8 6 5 10 10 Si 1.86793 * 120.00462 * 0.27855 * 8 6 5 11 11 H 1.48498 * 109.47222 * 89.99696 * 10 8 6 12 12 H 1.48498 * 109.47390 * 210.00062 * 10 8 6 13 13 H 1.48506 * 109.47228 * 329.99960 * 10 8 6 14 14 C 1.46906 * 110.99852 * 299.90013 * 4 3 2 15 15 C 1.53002 * 109.46720 * 288.44571 * 14 4 3 16 16 C 1.52999 * 109.46786 * 179.53800 * 15 14 4 17 17 C 1.52996 * 109.47114 * 180.02562 * 16 15 14 18 18 H 1.09003 * 112.67904 * 313.98394 * 17 16 15 19 19 C 1.53368 * 113.39446 * 183.41986 * 17 16 15 20 20 C 1.53360 * 81.25894 * 218.61399 * 19 17 16 21 21 O 1.43344 * 88.45147 * 26.48110 * 20 19 17 22 22 H 1.07997 * 120.00024 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99566 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.00048 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47002 * 4.05561 * 3 2 1 26 26 H 1.09000 * 109.47676 * 244.04923 * 3 2 1 27 27 H 1.09003 * 109.47041 * 306.05188 * 5 4 3 28 28 H 1.08995 * 109.47258 * 186.04465 * 5 4 3 29 29 H 0.96993 * 120.00480 * 180.02562 * 9 8 6 30 30 H 1.08993 * 109.47279 * 48.44669 * 14 4 3 31 31 H 1.09001 * 109.46407 * 168.45054 * 14 4 3 32 32 H 1.08996 * 109.47373 * 299.53388 * 15 14 4 33 33 H 1.09000 * 109.47103 * 59.53825 * 15 14 4 34 34 H 1.09010 * 109.46919 * 300.00084 * 16 15 14 35 35 H 1.08999 * 109.47650 * 59.99454 * 16 15 14 36 36 H 1.09010 * 114.56025 * 331.70316 * 19 17 16 37 37 H 1.08997 * 114.56826 * 105.51294 * 19 17 16 38 38 H 1.09001 * 113.39158 * 271.58072 * 20 19 17 39 39 H 1.09006 * 113.43412 * 141.38929 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9800 1.3413 1.1476 5 6 4.0045 0.2944 1.0364 6 6 4.8955 0.5867 -0.1434 7 1 4.7186 1.4627 -0.7497 8 6 5.9401 -0.2611 -0.4450 9 7 6.7210 -0.0031 -1.4713 10 14 6.2465 -1.7760 0.6040 11 1 5.4825 -2.9233 0.0515 12 1 7.6962 -2.0975 0.5978 13 1 5.8041 -1.5114 1.9967 14 6 2.2436 1.2249 2.4133 15 6 1.4731 2.5204 2.6760 16 6 0.6969 2.3949 3.9885 17 6 -0.0740 3.6901 4.2510 18 1 0.5339 4.5808 4.0913 19 6 -0.8207 3.6936 5.5906 20 6 -1.8697 4.4168 4.7372 21 8 -1.3437 3.7412 3.5876 22 1 -0.5400 -0.9353 -0.0004 23 1 -0.5399 0.9354 0.0004 24 1 1.8501 -0.9353 0.0004 25 1 1.3575 2.1322 0.0727 26 1 2.6347 1.3949 -0.9240 27 1 3.5219 -0.6729 0.8963 28 1 4.6029 0.2734 1.9472 29 1 7.4557 -0.5996 -1.6838 30 1 1.5433 0.3920 2.3510 31 1 2.9464 1.0486 3.2276 32 1 2.1741 3.3521 2.7467 33 1 0.7763 2.7011 1.8576 34 1 -0.0041 1.5631 3.9179 35 1 1.3937 2.2142 4.8070 36 1 -1.1243 2.7076 5.9426 37 1 -0.3618 4.3101 6.3636 38 1 -1.7312 5.4975 4.7051 39 1 -2.8943 4.1313 4.9758 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602671388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:22 Heat of formation + Delta-G solvation = 6.456717 kcal Electronic energy + Delta-G solvation = -17203.144611 eV Core-core repulsion = 14533.629248 eV Total energy + Delta-G solvation = -2669.515363 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.83499 -37.75929 -33.90321 -32.87339 -31.80752 -30.09311 -28.31855 -26.83457 -24.97017 -22.95827 -20.99459 -20.87042 -20.62103 -18.60174 -16.78382 -16.73997 -16.11814 -15.73892 -15.09966 -14.92611 -14.45872 -13.86385 -13.54925 -13.03784 -12.87743 -12.70329 -12.38611 -12.24628 -11.66945 -11.62318 -11.15711 -11.02044 -10.96245 -10.88558 -10.79347 -10.57342 -10.23530 -9.95924 -9.85629 -9.71421 -9.33569 -8.83768 -8.55571 -7.32100 -6.03259 -3.99954 2.72900 3.28523 3.36502 3.38439 3.76515 4.00372 4.43315 4.57130 4.79967 5.00148 5.08269 5.14951 5.22361 5.29288 5.42189 5.46129 5.52987 5.59144 5.67470 5.74967 5.87705 5.96301 5.99099 6.08508 6.15174 6.19496 6.38323 6.52666 6.58168 6.69887 6.87941 6.99305 7.09600 7.21126 7.64976 7.95134 8.10208 8.68993 9.05601 9.58782 11.10018 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034860 B = 0.004892 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.019364 B = 5722.837850 C = 6027.022312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.084 3.916 4 N -0.520 5.520 5 C 0.158 3.842 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.874 3.126 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.050 3.950 15 C -0.111 4.111 16 C -0.119 4.119 17 C 0.062 3.938 18 H 0.091 0.909 19 C -0.189 4.189 20 C 0.026 3.974 21 O -0.366 6.366 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.063 0.937 26 H 0.095 0.905 27 H -0.013 1.013 28 H 0.026 0.974 29 H 0.263 0.737 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.960 5.296 12.932 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.182 4.182 3 C -0.044 4.044 4 N -0.242 5.242 5 C 0.032 3.968 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.078 4.078 15 C -0.149 4.149 16 C -0.157 4.157 17 C 0.004 3.996 18 H 0.108 0.892 19 C -0.226 4.226 20 C -0.051 4.051 21 O -0.285 6.285 22 H 0.105 0.895 23 H 0.110 0.890 24 H 0.125 0.875 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.005 0.995 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.624 5.603 12.572 20.083 hybrid contribution -0.099 -1.713 0.599 1.818 sum -14.723 3.890 13.171 20.134 Atomic orbital electron populations 1.23684 0.95902 1.00895 1.04251 1.23850 0.96246 1.01324 0.96800 1.21352 0.94096 0.92424 0.96506 1.62228 1.12546 1.49513 0.99902 1.20227 0.90138 0.88262 0.98150 1.21046 1.11496 1.10858 1.11089 0.90138 1.24889 0.95774 0.97635 0.95018 1.69892 1.18276 1.38077 1.27783 0.86886 0.77540 0.83878 0.81576 1.20410 1.21176 1.19226 1.22110 0.96282 0.95932 0.93525 1.21531 0.98449 0.98768 0.96171 1.21736 0.98838 0.96081 0.99057 1.23332 0.87275 0.99447 0.89547 0.89167 1.24418 0.97806 1.02273 0.98121 1.23480 0.99053 0.97250 0.85301 1.89952 1.23416 1.76837 1.38305 0.89547 0.89017 0.87505 0.91841 0.88656 0.99497 0.95561 0.92714 0.95279 0.91837 0.91352 0.91858 0.91208 0.90549 0.88444 0.90316 0.90511 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.26 14.32 29.01 0.42 -2.84 16 2 C -0.16 -2.96 7.43 -36.03 -0.27 -3.23 16 3 C 0.08 1.65 5.46 -4.97 -0.03 1.62 16 4 N -0.52 -10.94 4.66 -237.50 -1.11 -12.04 16 5 C 0.16 3.85 3.62 -4.97 -0.02 3.83 16 6 C -0.51 -14.39 9.01 -34.44 -0.31 -14.70 16 7 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 10 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 14 C 0.05 0.87 4.82 -3.82 -0.02 0.85 16 15 C -0.11 -1.62 5.26 -26.73 -0.14 -1.76 16 16 C -0.12 -1.41 5.26 -26.73 -0.14 -1.55 16 17 C 0.06 0.66 4.01 -39.31 -0.16 0.50 16 18 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.19 -1.53 8.20 -26.35 -0.22 -1.75 16 20 C 0.03 0.23 8.73 24.58 0.21 0.44 16 21 O -0.37 -4.69 12.56 -35.23 -0.44 -5.14 16 22 H 0.09 1.21 8.06 -52.49 -0.42 0.79 16 23 H 0.09 1.35 7.84 -52.48 -0.41 0.93 16 24 H 0.11 2.10 6.79 -52.48 -0.36 1.75 16 25 H 0.06 1.13 6.32 -51.93 -0.33 0.80 16 26 H 0.10 2.10 6.76 -51.93 -0.35 1.75 16 27 H -0.01 -0.30 5.76 -51.93 -0.30 -0.60 16 28 H 0.03 0.65 6.92 -51.93 -0.36 0.29 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.03 0.50 6.73 -51.93 -0.35 0.16 16 31 H 0.06 1.08 7.82 -51.93 -0.41 0.68 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.99 6.73 -51.93 -0.35 0.64 16 34 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.76 8.13 -51.92 -0.42 0.34 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -30.91 311.51 -8.08 -38.99 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.57 Total: 0.18 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.76 Total: -16.70 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.33 Total: -38.96 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.44 Total: -5.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.91 -8.08 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602671388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.447 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds