Wall clock time and date at job start Mon Mar 30 2020 04:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.45055 * 2 1 4 4 C 1.54545 * 110.41131 * 237.59628 * 2 1 3 5 5 C 1.53595 * 104.82649 * 217.45490 * 4 2 1 6 6 C 1.53739 * 110.35629 * 240.97872 * 5 4 2 7 7 C 1.55464 * 102.03163 * 217.12837 * 6 5 4 8 8 C 1.55011 * 101.01048 * 33.60022 * 7 6 5 9 9 C 1.52991 * 110.30397 * 82.86126 * 8 7 6 10 10 C 1.50693 * 110.30086 * 205.01776 * 8 7 6 11 11 H 1.07997 * 120.00644 * 357.19436 * 10 8 7 12 12 C 1.37886 * 120.00070 * 177.19968 * 10 8 7 13 13 N 1.31518 * 119.99442 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00080 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46874 * 89.99961 * 14 12 10 16 16 H 1.48502 * 109.46806 * 209.99363 * 14 12 10 17 17 H 1.48494 * 109.47446 * 329.99471 * 14 12 10 18 18 O 1.42482 * 111.12328 * 120.73335 * 5 4 2 19 19 C 1.53737 * 105.72483 * 0.19568 * 5 4 2 20 20 N 1.48615 * 110.40859 * 122.40260 * 2 1 3 21 21 C 1.46901 * 111.00231 * 277.48218 * 20 2 1 22 22 H 1.08997 * 109.47286 * 299.04642 * 1 2 3 23 23 H 1.08999 * 109.47039 * 59.05290 * 1 2 3 24 24 H 1.08997 * 109.46605 * 179.04781 * 1 2 3 25 25 H 1.09003 * 110.36896 * 98.61918 * 4 2 1 26 26 H 1.09001 * 110.36853 * 336.29622 * 4 2 1 27 27 H 1.08993 * 110.92415 * 335.31554 * 6 5 4 28 28 H 1.09006 * 110.92008 * 98.94643 * 6 5 4 29 29 H 1.08995 * 111.11113 * 275.66832 * 7 6 5 30 30 H 1.08997 * 111.14840 * 151.54899 * 7 6 5 31 31 H 1.09006 * 109.47131 * 302.79937 * 9 8 7 32 32 H 1.08999 * 109.47442 * 62.79970 * 9 8 7 33 33 H 1.09001 * 109.47084 * 182.80289 * 9 8 7 34 34 H 0.97002 * 119.99321 * 180.02562 * 13 12 10 35 35 H 1.09005 * 110.43297 * 142.14047 * 19 5 4 36 36 H 1.08994 * 110.43801 * 264.52856 * 19 5 4 37 37 H 1.08998 * 109.47538 * 304.58369 * 21 20 2 38 38 H 1.09005 * 109.46689 * 64.58730 * 21 20 2 39 39 H 1.09004 * 109.47233 * 184.58131 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9109 1.0214 0.0000 4 6 2.0690 -0.7762 -1.2229 5 6 3.3108 -1.5157 -0.7029 6 6 4.5641 -1.0593 -1.4674 7 6 5.3710 -2.3828 -1.5863 8 6 4.2244 -3.4180 -1.7155 9 6 3.7406 -3.4962 -3.1647 10 6 4.6871 -4.7723 -1.2436 11 1 5.7096 -4.9131 -0.9257 12 6 3.8050 -5.8318 -1.2177 13 7 2.5598 -5.6601 -1.6044 14 14 4.3788 -7.5107 -0.6334 15 1 4.1695 -7.6227 0.8325 16 1 3.6006 -8.5685 -1.3268 17 1 5.8220 -7.6755 -0.9416 18 8 3.1744 -2.9247 -0.8645 19 6 3.4275 -1.1400 0.7832 20 7 2.0483 -0.7464 1.1760 21 6 2.0645 0.1038 2.3738 22 1 -0.3634 0.4989 0.8984 23 1 -0.3633 0.5285 -0.8814 24 1 -0.3632 -1.0275 -0.0171 25 1 2.3449 -0.0851 -2.0194 26 1 1.3244 -1.4884 -1.5785 27 1 4.3006 -0.6743 -2.4524 28 1 5.1191 -0.3152 -0.8960 29 1 5.9636 -2.5633 -0.6895 30 1 6.0004 -2.3811 -2.4762 31 1 3.4208 -2.5078 -3.4949 32 1 4.5535 -3.8464 -3.8008 33 1 2.9026 -4.1901 -3.2311 34 1 1.9392 -6.4054 -1.5858 35 1 3.7596 -1.9981 1.3677 36 1 4.1151 -0.3041 0.9116 37 1 2.6393 1.0073 2.1704 38 1 1.0430 0.3753 2.6405 39 1 2.5231 -0.4403 3.1995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686236719.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:13 Heat of formation + Delta-G solvation = -40.321811 kcal Electronic energy + Delta-G solvation = -18654.107082 eV Core-core repulsion = 15982.563250 eV Total energy + Delta-G solvation = -2671.543832 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.64484 -37.07158 -32.95932 -31.50390 -31.06977 -30.55003 -27.55775 -25.85682 -25.16232 -24.18752 -22.18098 -20.08563 -19.54449 -18.97068 -16.41564 -15.45920 -15.00629 -14.69141 -14.48465 -14.10050 -13.66137 -13.26233 -12.84936 -12.57655 -12.28732 -12.07028 -11.74730 -11.61125 -11.45672 -11.26267 -10.97375 -10.86797 -10.82339 -10.63656 -10.49227 -10.42647 -10.29753 -10.02743 -9.67360 -9.39372 -8.92248 -8.43598 -8.10744 -7.82320 -5.90453 -4.05643 3.34999 3.41710 3.43578 4.32564 4.47247 4.94421 5.04441 5.14399 5.39213 5.46340 5.51552 5.59345 5.60466 5.66540 5.80810 5.97104 5.98549 5.99200 6.08543 6.12791 6.23953 6.30027 6.47174 6.52847 6.57780 6.64345 6.72949 6.80518 6.90338 6.96340 7.15594 7.26996 7.39920 7.43420 7.83593 8.15280 8.41656 8.73764 9.14229 9.64695 11.12603 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.028221 B = 0.008036 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.927160 B = 3483.351466 C = 3699.202507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.125 4.125 5 C 0.103 3.897 6 C -0.145 4.145 7 C -0.142 4.142 8 C 0.230 3.770 9 C -0.144 4.144 10 C -0.526 4.526 11 H 0.060 0.940 12 C 0.082 3.918 13 N -0.857 5.857 14 Si 0.887 3.113 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 O -0.325 6.325 19 C 0.035 3.965 20 N -0.504 5.504 21 C 0.015 3.985 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.259 0.741 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.020 0.980 38 H 0.064 0.936 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 11.228 2.043 11.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.049 4.049 3 H 0.060 0.940 4 C -0.163 4.163 5 C 0.061 3.939 6 C -0.183 4.183 7 C -0.180 4.180 8 C 0.193 3.807 9 C -0.202 4.202 10 C -0.564 4.564 11 H 0.079 0.921 12 C -0.124 4.124 13 N -0.493 5.493 14 Si 0.715 3.285 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 O -0.244 6.244 19 C -0.093 4.093 20 N -0.228 5.228 21 C -0.134 4.134 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.030 0.970 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.083 10.543 2.242 10.833 hybrid contribution 0.948 0.063 0.174 0.966 sum -0.134 10.606 2.416 10.879 Atomic orbital electron populations 1.21691 0.94252 1.02710 1.00456 1.22659 0.95871 0.94955 0.91433 0.93987 1.22780 0.99050 0.98608 0.95876 1.21944 0.92698 0.87199 0.92082 1.23176 0.96815 0.98508 0.99845 1.23350 0.99313 0.94446 1.00895 1.19950 0.81511 0.91353 0.87871 1.22075 1.02199 0.98782 0.97164 1.20973 0.96573 0.92338 1.46516 0.92148 1.25002 0.94767 0.98567 0.94061 1.69978 1.03455 1.31020 1.44824 0.86690 0.78705 0.84058 0.79049 1.20571 1.21212 1.19928 1.88866 1.52234 1.14110 1.69163 1.23434 0.88639 0.99694 0.97558 1.65354 1.19087 1.35780 1.02541 1.22495 1.01263 0.95243 0.94359 0.93394 0.92738 0.91407 0.91961 0.89657 0.91560 0.92151 0.91829 0.92115 0.97028 0.94703 0.89515 0.93094 0.89258 0.94382 0.96137 0.91734 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.36 37.16 0.35 -1.53 16 2 C 0.06 0.94 2.90 -65.95 -0.19 0.75 16 3 H 0.04 0.61 7.90 -51.93 -0.41 0.20 16 4 C -0.13 -2.26 6.00 -25.61 -0.15 -2.41 16 5 C 0.10 2.09 1.25 -89.54 -0.11 1.97 16 6 C -0.15 -2.65 5.67 -25.04 -0.14 -2.79 16 7 C -0.14 -2.97 6.02 -24.36 -0.15 -3.12 16 8 C 0.23 5.78 0.72 -90.72 -0.07 5.71 16 9 C -0.14 -3.52 8.63 37.15 0.32 -3.20 16 10 C -0.53 -14.62 8.28 -34.44 -0.29 -14.90 16 11 H 0.06 1.65 7.76 -52.49 -0.41 1.24 16 12 C 0.08 2.29 5.28 -17.81 -0.09 2.20 16 13 N -0.86 -24.89 11.08 55.43 0.61 -24.28 16 14 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 O -0.32 -8.37 9.55 -35.23 -0.34 -8.71 16 19 C 0.03 0.64 5.81 -2.43 -0.01 0.63 16 20 N -0.50 -8.79 5.34 -230.47 -1.23 -10.03 16 21 C 0.02 0.21 9.42 60.07 0.57 0.78 16 22 H 0.05 0.60 7.56 -51.93 -0.39 0.21 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 25 H 0.06 1.00 7.33 -51.93 -0.38 0.61 16 26 H 0.08 1.73 7.71 -51.93 -0.40 1.33 16 27 H 0.07 1.14 7.16 -51.93 -0.37 0.77 16 28 H 0.06 0.96 7.35 -51.93 -0.38 0.58 16 29 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 30 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 31 H 0.01 0.24 7.50 -51.93 -0.39 -0.15 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 2.35 6.22 -51.93 -0.32 2.03 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.09 1.85 8.08 -51.93 -0.42 1.43 16 36 H 0.04 0.63 7.20 -51.93 -0.37 0.25 16 37 H 0.02 0.26 7.98 -51.93 -0.41 -0.16 16 38 H 0.06 0.80 7.56 -51.93 -0.39 0.41 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -29.74 300.41 -8.13 -37.88 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.72 Total: 0.11 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 0.03 Total: -15.92 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: -0.62 Total: -34.30 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.34 Total: -8.71 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.74 -8.13 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686236719.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.445 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds