Wall clock time and date at job start Mon Mar 30 2020 04:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.59301 * 2 1 4 4 C 1.55031 * 110.65695 * 237.01933 * 2 1 3 5 5 C 1.54203 * 102.82284 * 204.45479 * 4 2 1 6 6 C 1.53583 * 105.54106 * 21.75864 * 5 4 2 7 7 N 1.48019 * 106.94647 * 1.26161 * 6 5 4 8 8 C 1.46900 * 111.00111 * 214.27246 * 7 6 5 9 9 C 1.52603 * 109.86737 * 140.59576 * 5 4 2 10 10 C 1.53262 * 109.19515 * 65.35742 * 9 5 4 11 11 C 1.53179 * 108.98109 * 56.15941 * 10 9 5 12 12 C 1.53090 * 109.25266 * 302.60985 * 11 10 9 13 13 H 1.09000 * 109.50573 * 298.03886 * 12 11 10 14 14 C 1.50708 * 109.48288 * 177.99286 * 12 11 10 15 15 H 1.07998 * 120.00048 * 0.10078 * 14 12 11 16 16 C 1.37882 * 119.99465 * 180.09042 * 14 12 11 17 17 N 1.31510 * 120.00460 * 0.02562 * 16 14 12 18 18 Si 1.86809 * 119.99394 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47147 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46661 * 120.00897 * 18 16 14 21 21 H 1.48500 * 109.46816 * 240.00146 * 18 16 14 22 22 O 1.42355 * 109.98246 * 262.70003 * 5 4 2 23 23 H 1.08998 * 109.47693 * 182.98351 * 1 2 3 24 24 H 1.09003 * 109.46689 * 302.98170 * 1 2 3 25 25 H 1.08998 * 109.47310 * 62.97351 * 1 2 3 26 26 H 1.08994 * 110.74017 * 86.11725 * 4 2 1 27 27 H 1.08997 * 110.73729 * 322.79198 * 4 2 1 28 28 H 1.09002 * 109.97387 * 120.64629 * 6 5 4 29 29 H 1.08997 * 109.97305 * 241.88135 * 6 5 4 30 30 H 1.08997 * 109.47027 * 59.87183 * 8 7 6 31 31 H 1.09003 * 109.46993 * 179.87524 * 8 7 6 32 32 H 1.09003 * 109.46809 * 299.87138 * 8 7 6 33 33 H 1.08994 * 109.51736 * 185.27011 * 9 5 4 34 34 H 1.09000 * 109.51674 * 305.44573 * 9 5 4 35 35 H 1.09001 * 109.55693 * 296.31116 * 10 9 5 36 36 H 1.09003 * 109.63710 * 176.06119 * 10 9 5 37 37 H 1.08996 * 109.50914 * 182.67319 * 11 10 9 38 38 H 1.09000 * 109.54146 * 62.56339 * 11 10 9 39 39 H 0.96999 * 120.00023 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0769 -0.7897 -1.2169 5 6 3.4783 -1.2233 -0.7416 6 6 3.4269 -1.1715 0.7924 7 7 2.0545 -0.7602 1.1645 8 6 2.0642 0.0709 2.3757 9 6 3.7686 -2.6456 -1.2125 10 6 3.8458 -2.6638 -2.7430 11 6 4.9037 -1.6548 -3.2005 12 6 4.5444 -0.2675 -2.6621 13 1 3.5836 0.0442 -3.0716 14 6 5.6080 0.7201 -3.0677 15 1 6.4547 0.3921 -3.6525 16 6 5.5000 2.0425 -2.6924 17 7 4.4691 2.4418 -1.9801 18 14 6.8180 3.2668 -3.1959 19 1 7.8638 2.5707 -3.9876 20 1 6.2070 4.3410 -4.0195 21 1 7.4304 3.8622 -1.9812 22 8 4.4608 -0.3192 -1.2355 23 1 -0.3634 -1.0262 0.0535 24 1 -0.3633 0.5595 0.8621 25 1 -0.3634 0.4670 -0.9154 26 1 2.1485 -0.1464 -2.0939 27 1 1.4534 -1.6592 -1.4245 28 1 3.6454 -2.1562 1.2058 29 1 4.1475 -0.4434 1.1648 30 1 2.6628 0.9644 2.1985 31 1 1.0435 0.3610 2.6254 32 1 2.4932 -0.4960 3.2019 33 1 4.7185 -2.9803 -0.7960 34 1 2.9702 -3.3092 -0.8803 35 1 2.8767 -2.3907 -3.1606 36 1 4.1218 -3.6616 -3.0841 37 1 4.9325 -1.6263 -4.2897 38 1 5.8803 -1.9519 -2.8183 39 1 4.3934 3.3720 -1.7158 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686238504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:55 Heat of formation + Delta-G solvation = -70.295766 kcal Electronic energy + Delta-G solvation = -18753.764892 eV Core-core repulsion = 16080.921292 eV Total energy + Delta-G solvation = -2672.843600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.19501 -38.34813 -34.91876 -34.12143 -32.74201 -32.56372 -29.31949 -27.16960 -26.99097 -25.12566 -23.75181 -22.34865 -21.03475 -19.79018 -18.62530 -17.47556 -16.68352 -16.25590 -16.12320 -15.63203 -15.31745 -15.20083 -14.77938 -14.14193 -13.93745 -13.86068 -13.41253 -13.18546 -13.06712 -12.86525 -12.75074 -12.51601 -12.45120 -12.20061 -12.07594 -12.05036 -11.87311 -11.66542 -11.33376 -11.12441 -10.80515 -10.46921 -9.63707 -9.45812 -8.15256 -6.34409 1.36700 1.38395 1.50326 2.38498 2.92949 3.10662 3.50172 3.77374 3.89707 4.07465 4.19561 4.22861 4.34811 4.42941 4.46502 4.53475 4.58547 4.62999 4.77969 4.78943 4.83298 4.91000 4.94606 4.96051 5.02083 5.10198 5.15916 5.20166 5.31497 5.36578 5.37639 5.43517 5.58942 5.81298 5.87016 6.08994 6.24110 6.68846 7.28595 7.42416 8.91400 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.022892 B = 0.009411 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.853750 B = 2974.396969 C = 3633.402953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.063 3.937 3 H 0.020 0.980 4 C -0.131 4.131 5 C 0.089 3.911 6 C 0.053 3.947 7 N -0.507 5.507 8 C 0.016 3.984 9 C -0.125 4.125 10 C -0.114 4.114 11 C -0.140 4.140 12 C 0.219 3.781 13 H -0.010 1.010 14 C -0.553 4.553 15 H 0.061 0.939 16 C 0.028 3.972 17 N -0.891 5.891 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.283 1.283 22 O -0.379 6.379 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.027 0.973 30 H 0.007 0.993 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.207 -7.931 4.483 11.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.045 4.045 3 H 0.038 0.962 4 C -0.169 4.169 5 C 0.048 3.952 6 C -0.075 4.075 7 N -0.232 5.232 8 C -0.132 4.132 9 C -0.163 4.163 10 C -0.151 4.151 11 C -0.178 4.178 12 C 0.164 3.836 13 H 0.007 0.993 14 C -0.591 4.591 15 H 0.079 0.921 16 C -0.175 4.175 17 N -0.528 5.528 18 Si 0.781 3.219 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.209 1.209 22 O -0.299 6.299 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.046 0.954 30 H 0.025 0.975 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.501 -8.125 4.810 11.464 hybrid contribution 1.256 1.803 -0.555 2.266 sum -5.245 -6.322 4.256 9.252 Atomic orbital electron populations 1.21584 0.91782 1.02881 1.01688 1.22698 0.96988 0.94469 0.90320 0.96219 1.22980 0.96818 0.99857 0.97244 1.21995 0.89071 0.90720 0.93402 1.22777 0.89923 1.01172 0.93581 1.64954 1.17793 1.36957 1.03453 1.22567 1.02346 0.95253 0.93064 1.22020 1.02328 0.95716 0.96260 1.21598 0.98649 0.99270 0.95569 1.22129 0.98756 0.96753 1.00128 1.19549 0.94304 0.91377 0.78382 0.99261 1.21502 1.09593 0.93488 1.34491 0.92088 1.25863 0.97391 1.00255 0.94004 1.70182 1.30103 1.16275 1.36232 0.85559 0.79518 0.78840 0.78004 1.18758 1.20101 1.20857 1.88185 1.55883 1.61695 1.24163 0.90783 0.92052 0.92288 0.93207 0.89342 0.87991 0.95429 0.97476 0.89740 0.89861 0.91893 0.89215 0.92332 0.89958 0.92226 0.93276 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 9.45 71.98 0.68 -2.74 16 2 C 0.06 2.32 2.92 45.28 0.13 2.45 16 3 H 0.02 0.89 7.97 -2.39 -0.02 0.87 16 4 C -0.13 -5.07 4.64 31.70 0.15 -4.93 16 5 C 0.09 3.61 0.98 -10.32 -0.01 3.60 16 6 C 0.05 1.97 6.18 86.28 0.53 2.50 16 7 N -0.51 -16.88 5.25 -884.32 -4.64 -21.52 16 8 C 0.02 0.47 9.31 127.69 1.19 1.66 16 9 C -0.13 -4.18 4.55 30.55 0.14 -4.04 16 10 C -0.11 -3.82 5.81 30.74 0.18 -3.64 16 11 C -0.14 -5.93 5.34 30.68 0.16 -5.76 16 12 C 0.22 11.52 2.24 29.88 0.07 11.59 16 13 H -0.01 -0.57 6.15 -2.39 -0.01 -0.59 16 14 C -0.55 -31.94 8.80 25.60 0.23 -31.72 16 15 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.03 1.58 5.40 84.66 0.46 2.04 16 17 N -0.89 -53.73 12.84 21.45 0.28 -53.46 16 18 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 O -0.38 -19.95 9.20 -148.98 -1.37 -21.32 16 23 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.06 1.54 7.66 -2.39 -0.02 1.52 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 2.29 5.95 -2.39 -0.01 2.28 16 27 H 0.09 2.92 7.65 -2.39 -0.02 2.90 16 28 H 0.10 3.18 7.67 -2.39 -0.02 3.16 16 29 H 0.03 1.16 7.55 -2.39 -0.02 1.14 16 30 H 0.01 0.22 8.01 -2.39 -0.02 0.20 16 31 H 0.08 2.09 7.60 -2.39 -0.02 2.07 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.09 2.48 8.06 -2.39 -0.02 2.46 16 35 H 0.06 1.94 7.48 -2.39 -0.02 1.92 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -65.34 298.56 1.19 -64.15 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 1.00 Total: 14.33 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 3.90 Total: -28.97 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -4.37 Total: -74.98 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.37 Total: -21.32 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.34 1.19 -64.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686238504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.142 kcal (2) G-P(sol) polarization free energy of solvation -65.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds