Wall clock time and date at job start Mon Mar 30 2020 04:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.36481 * 2 1 4 4 C 1.54476 * 110.40574 * 237.53443 * 2 1 3 5 5 C 1.53859 * 104.91615 * 217.44038 * 4 2 1 6 6 C 1.53972 * 105.46712 * 0.09812 * 5 4 2 7 7 N 1.48601 * 110.41047 * 122.34889 * 2 1 3 8 8 C 1.46901 * 110.99802 * 277.60296 * 7 2 1 9 9 C 1.52592 * 110.08606 * 241.43078 * 5 4 2 10 10 C 1.53256 * 109.23648 * 181.69019 * 9 5 4 11 11 C 1.53191 * 108.97765 * 56.13240 * 10 9 5 12 12 C 1.53090 * 109.22090 * 302.55477 * 11 10 9 13 13 H 1.08996 * 109.48641 * 298.10065 * 12 11 10 14 14 C 1.50697 * 109.48410 * 178.04787 * 12 11 10 15 15 H 1.08001 * 120.00501 * 0.09058 * 14 12 11 16 16 C 1.37882 * 119.99903 * 180.09482 * 14 12 11 17 17 N 1.31521 * 120.00073 * 180.02562 * 16 14 12 18 18 Si 1.86796 * 120.00042 * 359.97438 * 16 14 12 19 19 H 1.48505 * 109.46825 * 90.00331 * 18 16 14 20 20 H 1.48499 * 109.47468 * 210.00493 * 18 16 14 21 21 H 1.48499 * 109.47199 * 330.00888 * 18 16 14 22 22 O 1.42337 * 110.21925 * 118.98105 * 5 4 2 23 23 H 1.08998 * 109.46867 * 299.10592 * 1 2 3 24 24 H 1.08998 * 109.47094 * 59.10519 * 1 2 3 25 25 H 1.09000 * 109.47381 * 179.11121 * 1 2 3 26 26 H 1.08999 * 110.35601 * 336.30123 * 4 2 1 27 27 H 1.09002 * 110.35355 * 98.58682 * 4 2 1 28 28 H 1.09004 * 110.42691 * 264.83424 * 6 5 4 29 29 H 1.09000 * 110.43032 * 142.35226 * 6 5 4 30 30 H 1.09002 * 109.47401 * 59.99843 * 8 7 2 31 31 H 1.09001 * 109.46874 * 299.99856 * 8 7 2 32 32 H 1.09004 * 109.46970 * 179.97438 * 8 7 2 33 33 H 1.09000 * 109.50755 * 301.62155 * 9 5 4 34 34 H 1.09003 * 109.51034 * 61.76341 * 9 5 4 35 35 H 1.08996 * 109.55406 * 296.28532 * 10 9 5 36 36 H 1.08998 * 109.63725 * 176.03010 * 10 9 5 37 37 H 1.08994 * 109.51198 * 182.63057 * 11 10 9 38 38 H 1.08997 * 109.51048 * 62.47473 * 11 10 9 39 39 H 0.97002 * 119.99894 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0686 -0.7772 -1.2215 5 6 3.3131 -1.5181 -0.7023 6 6 3.4281 -1.1355 0.7847 7 7 2.0483 -0.7452 1.1766 8 6 2.0618 0.1054 2.3742 9 6 4.5537 -1.0530 -1.4592 10 6 5.7737 -1.8326 -0.9566 11 6 5.5052 -3.3327 -1.1127 12 6 4.2346 -3.7002 -0.3418 13 1 4.3794 -3.4919 0.7182 14 6 3.9382 -5.1656 -0.5307 15 1 4.5911 -5.7747 -1.1382 16 6 2.8334 -5.7287 0.0721 17 7 2.5750 -7.0078 -0.0923 18 14 1.7044 -4.6754 1.1233 19 1 0.6350 -4.0944 0.2722 20 1 1.0915 -5.5137 2.1848 21 1 2.4890 -3.5805 1.7484 22 8 3.1393 -2.9246 -0.8350 23 1 -0.3633 0.4999 0.8979 24 1 -0.3633 0.5277 -0.8818 25 1 -0.3634 -1.0275 -0.0159 26 1 1.3238 -1.4896 -1.5762 27 1 2.3438 -0.0868 -2.0189 28 1 4.1112 -0.2953 0.9097 29 1 3.7632 -1.9900 1.3726 30 1 1.0482 0.4419 2.5924 31 1 2.7018 0.9700 2.1985 32 1 2.4450 -0.4648 3.2205 33 1 4.4192 -1.2352 -2.5254 34 1 4.7067 0.0125 -1.2877 35 1 5.9474 -1.6005 0.0941 36 1 6.6512 -1.5563 -1.5411 37 1 6.3486 -3.8968 -0.7145 38 1 5.3725 -3.5709 -2.1680 39 1 1.7979 -7.4040 0.3320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686238507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:57 Heat of formation + Delta-G solvation = -67.860982 kcal Electronic energy + Delta-G solvation = -18947.037429 eV Core-core repulsion = 16274.299408 eV Total energy + Delta-G solvation = -2672.738020 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38050 -38.50322 -34.96209 -34.34494 -33.28381 -32.36156 -29.60408 -27.34922 -26.97298 -25.14222 -23.54717 -22.56073 -21.04345 -19.95921 -19.00324 -17.30771 -17.01947 -16.60333 -15.93573 -15.83392 -15.46850 -15.13712 -14.69430 -14.26982 -14.20449 -13.88155 -13.45734 -13.30082 -13.11895 -12.95504 -12.87613 -12.58999 -12.46991 -12.13342 -12.12679 -11.87227 -11.75607 -11.63943 -11.63038 -11.17791 -10.93432 -10.63985 -9.86026 -9.36930 -8.36048 -6.48518 1.40350 1.48957 1.64585 2.40157 2.80659 3.04801 3.40097 3.72587 3.75380 3.99621 4.08116 4.15024 4.22504 4.35352 4.42971 4.45519 4.50110 4.52631 4.64757 4.67589 4.77241 4.88504 4.91371 4.94560 4.95904 5.01443 5.05414 5.15474 5.23695 5.26289 5.31442 5.38987 5.55499 5.61849 5.93163 6.17559 6.23015 6.57098 6.98075 7.29305 8.76686 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.012351 C = 0.009273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.527923 B = 2266.522034 C = 3018.942641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.062 3.938 3 H 0.077 0.923 4 C -0.111 4.111 5 C 0.093 3.907 6 C 0.013 3.987 7 N -0.540 5.540 8 C 0.016 3.984 9 C -0.128 4.128 10 C -0.115 4.115 11 C -0.133 4.133 12 C 0.188 3.812 13 H 0.017 0.983 14 C -0.525 4.525 15 H 0.043 0.957 16 C 0.028 3.972 17 N -0.940 5.940 18 Si 0.976 3.024 19 H -0.288 1.288 20 H -0.312 1.312 21 H -0.238 1.238 22 O -0.389 6.389 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 20.239 1.388 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.045 4.045 3 H 0.094 0.906 4 C -0.149 4.149 5 C 0.053 3.947 6 C -0.115 4.115 7 N -0.265 5.265 8 C -0.132 4.132 9 C -0.166 4.166 10 C -0.152 4.152 11 C -0.171 4.171 12 C 0.132 3.868 13 H 0.034 0.966 14 C -0.562 4.562 15 H 0.062 0.938 16 C -0.171 4.171 17 N -0.579 5.579 18 Si 0.805 3.195 19 H -0.214 1.214 20 H -0.241 1.241 21 H -0.161 1.161 22 O -0.309 6.309 23 H 0.084 0.916 24 H 0.098 0.902 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.198 19.575 1.489 19.632 hybrid contribution 0.033 0.050 0.331 0.336 sum 0.230 19.625 1.820 19.710 Atomic orbital electron populations 1.21706 0.93409 1.01276 1.02661 1.22738 0.96582 0.95938 0.89287 0.90551 1.22478 0.96054 0.98303 0.98060 1.22052 0.95921 0.83349 0.93378 1.23687 0.90468 1.00353 0.96991 1.65289 1.18431 1.38275 1.04488 1.22530 1.02512 0.95474 0.92667 1.22074 0.93713 1.00630 1.00164 1.21631 0.98319 0.93580 1.01711 1.21982 0.97939 0.96978 1.00197 1.20011 0.85147 0.88623 0.92988 0.96596 1.21298 1.11004 0.92541 1.31328 0.93847 1.25899 0.98599 0.95663 0.96960 1.70066 1.28853 1.13424 1.45600 0.85280 0.79071 0.77895 0.77299 1.21439 1.24099 1.16117 1.88052 1.44316 1.15521 1.83044 0.91612 0.90249 0.94670 0.92401 0.87928 0.91253 0.91983 0.90286 0.93822 0.92138 0.91359 0.88640 0.91704 0.89718 0.92060 0.93301 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.35 71.98 0.67 -2.52 16 2 C 0.06 1.62 2.90 45.09 0.13 1.75 16 3 H 0.08 1.57 7.96 -2.38 -0.02 1.55 16 4 C -0.11 -3.32 5.99 31.39 0.19 -3.14 16 5 C 0.09 3.23 1.03 -10.31 -0.01 3.22 16 6 C 0.01 0.42 4.56 86.29 0.39 0.81 16 7 N -0.54 -16.90 5.34 -882.94 -4.72 -21.61 16 8 C 0.02 0.39 9.45 127.69 1.21 1.59 16 9 C -0.13 -3.56 4.56 30.54 0.14 -3.42 16 10 C -0.12 -3.37 5.82 30.74 0.18 -3.19 16 11 C -0.13 -5.31 5.34 30.69 0.16 -5.15 16 12 C 0.19 9.16 1.72 29.88 0.05 9.21 16 13 H 0.02 0.81 5.28 -2.39 -0.01 0.80 16 14 C -0.52 -31.67 9.38 25.60 0.24 -31.43 16 15 H 0.04 2.83 7.99 -2.91 -0.02 2.81 16 16 C 0.03 1.76 5.47 84.65 0.46 2.23 16 17 N -0.94 -61.49 13.96 21.45 0.30 -61.19 16 18 Si 0.98 51.97 26.18 68.60 1.80 53.76 16 19 H -0.29 -15.73 7.11 99.48 0.71 -15.02 16 20 H -0.31 -16.42 7.11 99.48 0.71 -15.71 16 21 H -0.24 -11.85 5.27 99.48 0.52 -11.33 16 22 O -0.39 -18.29 7.50 -148.98 -1.12 -19.40 16 23 H 0.06 1.36 7.45 -2.39 -0.02 1.35 16 24 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 26 H 0.06 2.06 7.68 -2.39 -0.02 2.04 16 27 H 0.10 2.37 7.69 -2.39 -0.02 2.35 16 28 H 0.07 1.83 7.53 -2.38 -0.02 1.81 16 29 H 0.06 2.43 4.81 -2.39 -0.01 2.42 16 30 H 0.08 1.63 7.42 -2.39 -0.02 1.62 16 31 H 0.04 0.85 7.97 -2.39 -0.02 0.83 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 1.99 8.04 -2.39 -0.02 1.97 16 35 H 0.06 1.80 7.54 -2.39 -0.02 1.78 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 Total: -1.00 -72.18 290.69 0.90 -71.28 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.82 Total: 7.19 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 3.82 Total: -30.03 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -4.42 Total: -82.80 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -1.12 Total: -19.40 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 1.80 Total: 53.76 kcal Total: -72.18 0.90 -71.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686238507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.423 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds