Wall clock time and date at job start Mon Mar 30 2020 04:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47247 * 2 1 4 4 C 1.53136 * 109.47921 * 239.99481 * 2 1 3 5 5 C 1.52540 * 109.32975 * 181.73894 * 4 2 1 6 6 C 1.53966 * 110.17019 * 178.23701 * 5 4 2 7 7 C 1.54623 * 103.92587 * 142.34245 * 6 5 4 8 8 C 1.54515 * 104.05555 * 0.34841 * 7 6 5 9 9 H 1.09002 * 110.35630 * 95.03594 * 8 7 6 10 10 C 1.50703 * 110.35618 * 217.21868 * 8 7 6 11 11 H 1.07998 * 119.99590 * 358.49519 * 10 8 7 12 12 C 1.37874 * 119.99995 * 178.48975 * 10 8 7 13 13 N 1.31516 * 119.99901 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99816 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47073 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.46802 * 120.00344 * 14 12 10 17 17 H 1.48492 * 109.47305 * 240.00388 * 14 12 10 18 18 O 1.44129 * 110.21171 * 294.24604 * 5 4 2 19 19 C 1.52544 * 110.48219 * 56.29683 * 5 4 2 20 20 C 1.53144 * 109.32332 * 303.69609 * 19 5 4 21 21 N 1.46846 * 109.47389 * 120.00807 * 2 1 3 22 22 C 1.46908 * 111.00014 * 306.34225 * 21 2 1 23 23 H 1.09001 * 109.46999 * 299.99352 * 1 2 3 24 24 H 1.08997 * 109.46929 * 59.99106 * 1 2 3 25 25 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.49862 * 61.77679 * 4 2 1 27 27 H 1.09007 * 109.49408 * 301.69442 * 4 2 1 28 28 H 1.09005 * 110.54031 * 23.73622 * 6 5 4 29 29 H 1.08999 * 110.54230 * 260.95146 * 6 5 4 30 30 H 1.08999 * 110.51418 * 241.70359 * 7 6 5 31 31 H 1.08998 * 110.63002 * 119.04808 * 7 6 5 32 32 H 0.97007 * 119.99420 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.49593 * 63.65380 * 19 5 4 34 34 H 1.09007 * 109.49474 * 183.74405 * 19 5 4 35 35 H 1.09001 * 109.47625 * 178.26387 * 20 19 5 36 36 H 1.08999 * 109.47662 * 298.27576 * 20 19 5 37 37 H 1.08988 * 109.47169 * 291.69827 * 22 21 2 38 38 H 1.09000 * 109.46445 * 51.69966 * 22 21 2 39 39 H 1.08998 * 109.47055 * 171.68999 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0407 -0.7220 -1.2502 5 6 3.5654 -0.7579 -1.2251 6 6 4.0988 -1.5189 -2.4527 7 6 5.3681 -0.7329 -2.8552 8 6 5.4512 0.4047 -1.8130 9 1 6.1073 0.1186 -0.9909 10 6 5.9454 1.6731 -2.4596 11 1 6.2057 1.6788 -3.5078 12 6 6.0651 2.8261 -1.7133 13 7 5.7485 2.8190 -0.4368 14 14 6.6784 4.3981 -2.5147 15 1 6.9653 4.1429 -3.9492 16 1 5.6382 5.4515 -2.3981 17 1 7.9186 4.8495 -1.8341 18 8 4.0969 0.5770 -1.3388 19 6 4.0628 -1.4159 0.0581 20 6 3.4865 -0.6712 1.2658 21 7 2.0196 -0.6924 1.1989 22 6 1.4288 -0.1195 2.4158 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7039 -0.1905 -2.1403 27 1 1.6530 -1.7407 -1.2659 28 1 3.3669 -1.5028 -3.2604 29 1 4.3529 -2.5448 -2.1860 30 1 5.2613 -0.3236 -3.8598 31 1 6.2499 -1.3708 -2.7955 32 1 5.8331 3.6302 0.0884 33 1 3.7378 -2.4561 0.0831 34 1 5.1516 -1.3736 0.0902 35 1 3.8154 -1.1580 2.1839 36 1 3.8358 0.3613 1.2566 37 1 1.8134 0.8891 2.5663 38 1 0.3445 -0.0830 2.3108 39 1 1.6900 -0.7398 3.2732 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686253860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:06 Heat of formation + Delta-G solvation = -49.877868 kcal Electronic energy + Delta-G solvation = -18684.909011 eV Core-core repulsion = 16012.950797 eV Total energy + Delta-G solvation = -2671.958214 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58251 -37.05501 -32.92686 -31.97252 -31.43014 -30.72884 -27.76867 -26.40346 -25.20448 -22.98567 -22.26592 -20.30549 -19.56043 -18.52161 -16.62872 -15.39980 -15.12399 -14.73885 -14.58743 -14.33793 -13.90610 -13.59667 -13.13833 -12.87722 -12.14648 -11.93066 -11.76210 -11.70550 -11.56953 -11.35789 -11.15157 -11.02470 -10.87393 -10.59776 -10.48447 -10.42988 -10.18775 -9.96500 -9.47651 -9.37068 -9.04473 -8.58416 -7.98864 -7.80786 -6.01095 -4.12356 3.29346 3.37307 3.41083 4.35303 4.42466 4.99502 5.22840 5.30338 5.38114 5.45571 5.68881 5.71948 5.78609 5.79217 5.87938 5.92839 6.00108 6.02034 6.10126 6.12716 6.21424 6.29404 6.32892 6.45248 6.53895 6.57638 6.62847 6.76208 6.76907 6.83621 6.92323 7.04819 7.54002 7.57387 7.59904 7.89506 8.26519 8.59935 8.99987 9.57674 11.06566 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025714 B = 0.008459 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.631663 B = 3309.246419 C = 3750.193454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 H 0.054 0.946 4 C -0.089 4.089 5 C 0.090 3.910 6 C -0.143 4.143 7 C -0.147 4.147 8 C 0.207 3.793 9 H 0.024 0.976 10 C -0.528 4.528 11 H 0.063 0.937 12 C 0.077 3.923 13 N -0.864 5.864 14 Si 0.890 3.110 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 O -0.338 6.338 19 C -0.121 4.121 20 C 0.061 3.939 21 N -0.540 5.540 22 C 0.021 3.979 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.259 0.741 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.024 0.976 38 H 0.068 0.932 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 -7.388 2.216 10.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.049 3.951 6 C -0.181 4.181 7 C -0.185 4.185 8 C 0.151 3.849 9 H 0.042 0.958 10 C -0.566 4.566 11 H 0.081 0.919 12 C -0.128 4.128 13 N -0.500 5.500 14 Si 0.717 3.283 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 O -0.258 6.258 19 C -0.159 4.159 20 C -0.067 4.067 21 N -0.265 5.265 22 C -0.128 4.128 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.564 -7.563 2.392 10.961 hybrid contribution 0.727 1.530 -0.308 1.721 sum -6.837 -6.033 2.084 9.353 Atomic orbital electron populations 1.21946 0.95360 1.01770 1.01294 1.21555 0.93939 0.96977 0.90123 0.92765 1.21492 0.94279 1.00092 0.96858 1.21782 0.93176 0.87353 0.92762 1.22879 0.98392 0.98682 0.98119 1.23055 0.95571 0.98195 1.01690 1.20491 0.81499 0.92688 0.90199 0.95795 1.21104 1.44351 0.94780 0.96332 0.91934 1.25060 0.94144 0.98916 0.94723 1.70046 1.45877 1.27806 1.06300 0.86588 0.78395 0.83546 0.79739 1.19641 1.20923 1.20941 1.89492 1.29112 1.20306 1.86858 1.21866 1.00465 0.98584 0.94955 1.21984 0.86315 1.00769 0.97607 1.62021 1.07765 1.54813 1.01919 1.22402 0.99963 0.97662 0.92757 0.92799 0.92445 0.92323 0.91449 0.91504 0.92097 0.92305 0.91976 0.92951 0.93157 0.92112 0.91331 0.92050 0.92701 0.95771 0.91382 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.77 37.16 0.33 -1.70 16 2 C 0.08 1.43 2.35 -67.67 -0.16 1.27 16 3 H 0.05 1.15 7.91 -51.93 -0.41 0.74 16 4 C -0.09 -1.58 4.28 -26.90 -0.12 -1.70 16 5 C 0.09 1.81 0.69 -90.59 -0.06 1.75 16 6 C -0.14 -2.65 6.17 -25.37 -0.16 -2.80 16 7 C -0.15 -3.13 6.62 -25.08 -0.17 -3.30 16 8 C 0.21 5.34 2.67 -27.09 -0.07 5.27 16 9 H 0.02 0.67 7.24 -51.93 -0.38 0.30 16 10 C -0.53 -14.95 8.78 -34.44 -0.30 -15.25 16 11 H 0.06 1.73 7.58 -52.49 -0.40 1.33 16 12 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 13 N -0.86 -25.54 13.00 55.43 0.72 -24.82 16 14 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 O -0.34 -8.64 9.64 -35.23 -0.34 -8.98 16 19 C -0.12 -2.26 4.82 -26.89 -0.13 -2.39 16 20 C 0.06 1.13 5.37 -3.77 -0.02 1.11 16 21 N -0.54 -9.10 4.73 -234.78 -1.11 -10.21 16 22 C 0.02 0.30 9.29 60.07 0.56 0.85 16 23 H 0.05 0.69 6.15 -51.93 -0.32 0.37 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.06 1.05 7.85 -51.93 -0.41 0.65 16 29 H 0.06 0.96 7.84 -51.93 -0.41 0.55 16 30 H 0.06 1.33 7.71 -51.93 -0.40 0.93 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.06 1.02 8.13 -51.93 -0.42 0.59 16 34 H 0.07 1.36 6.93 -51.93 -0.36 1.00 16 35 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 36 H 0.05 1.23 7.91 -51.93 -0.41 0.82 16 37 H 0.02 0.37 8.14 -51.94 -0.42 -0.05 16 38 H 0.07 0.86 5.73 -51.93 -0.30 0.56 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -29.91 297.88 -8.38 -38.29 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.72 Total: -0.52 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -0.40 Total: -14.79 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.39 Total: -35.03 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.34 Total: -8.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.91 -8.38 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686253860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.585 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds