Wall clock time and date at job start Mon Mar 30 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47315 * 2 1 4 4 H 1.09000 * 109.46808 * 184.82693 * 3 2 1 5 5 C 1.50700 * 109.46925 * 304.82431 * 3 2 1 6 6 H 1.07995 * 120.00288 * 120.00184 * 5 3 2 7 7 C 1.37881 * 119.99856 * 299.99936 * 5 3 2 8 8 N 1.31507 * 120.00289 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99759 * 179.72381 * 7 5 3 10 10 H 1.48506 * 109.47028 * 60.00150 * 9 7 5 11 11 H 1.48498 * 109.47028 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47399 * 300.00289 * 9 7 5 13 13 N 1.46898 * 109.47237 * 64.82384 * 3 2 1 14 14 C 1.46898 * 111.00158 * 86.26927 * 13 3 2 15 15 H 1.09001 * 110.45492 * 325.12190 * 14 13 3 16 16 C 1.54546 * 110.50454 * 87.71230 * 14 13 3 17 17 O 1.44977 * 104.83386 * 95.02483 * 16 14 13 18 18 C 1.43344 * 105.25289 * 39.18066 * 17 16 14 19 19 C 1.52819 * 115.70215 * 90.37980 * 18 17 16 20 20 C 1.53957 * 86.79222 * 92.85882 * 19 18 17 21 21 C 1.52811 * 115.71777 * 191.35676 * 18 17 16 22 22 C 1.53557 * 106.13104 * 320.88660 * 18 17 16 23 23 H 1.08989 * 109.47511 * 182.98238 * 1 2 3 24 24 H 1.09006 * 109.46848 * 302.98668 * 1 2 3 25 25 H 1.08999 * 109.47080 * 62.97786 * 1 2 3 26 26 H 1.08999 * 109.46958 * 239.99798 * 2 1 3 27 27 H 1.08998 * 109.46799 * 119.99838 * 2 1 3 28 28 H 0.97001 * 120.00478 * 179.97438 * 8 7 5 29 29 H 1.00904 * 110.99871 * 322.31406 * 13 3 2 30 30 H 1.09002 * 110.33192 * 213.86876 * 16 14 13 31 31 H 1.08997 * 110.33430 * 336.10449 * 16 14 13 32 32 H 1.09004 * 113.66097 * 207.33550 * 19 18 17 33 33 H 1.08997 * 113.66237 * 338.38010 * 19 18 17 34 34 H 1.08996 * 113.58462 * 270.11861 * 20 19 18 35 35 H 1.09000 * 113.65716 * 139.31532 * 20 19 18 36 36 H 1.08999 * 113.65797 * 21.63501 * 21 18 17 37 37 H 1.09005 * 113.65595 * 152.68147 * 21 18 17 38 38 H 1.08993 * 110.57090 * 264.25531 * 22 18 17 39 39 H 1.09004 * 110.56552 * 141.39192 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1267 1.4436 -0.0865 5 6 1.4426 2.1866 -1.1664 6 1 0.8325 3.0608 -0.9939 7 6 1.6748 1.7511 -2.4538 8 7 2.4173 0.6862 -2.6640 9 14 0.9278 2.6689 -3.8992 10 1 1.4165 4.0712 -3.9011 11 1 1.3248 2.0040 -5.1663 12 1 -0.5523 2.6608 -3.7792 13 7 1.6479 2.1006 1.2534 14 6 2.6350 1.8485 2.3117 15 1 3.0532 0.8469 2.2117 16 6 3.7571 2.9103 2.2695 17 8 3.3505 3.9183 3.2289 18 6 2.7881 3.1886 4.3270 19 6 3.7674 2.7951 5.4322 20 6 3.3640 4.1035 6.1364 21 6 2.0356 4.0238 5.3622 22 6 1.9922 2.0310 3.7071 23 1 -0.3634 -1.0261 0.0535 24 1 -0.3633 0.5595 0.8621 25 1 -0.3633 0.4669 -0.9155 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.5804 0.3796 -3.5697 29 1 0.7260 1.8089 1.5418 30 1 4.7086 2.4677 2.5640 31 1 3.8321 3.3426 1.2717 32 1 3.4749 1.8972 5.9766 33 1 4.8079 2.7756 5.1082 34 1 3.9811 4.9573 5.8570 35 1 3.2468 4.0014 7.2152 36 1 1.6924 4.9859 4.9820 37 1 1.2560 3.4714 5.8868 38 1 0.9396 2.2975 3.6121 39 1 2.1067 1.1253 4.3028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688266883.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:29 Heat of formation + Delta-G solvation = -44.040153 kcal Electronic energy + Delta-G solvation = -17981.509818 eV Core-core repulsion = 15309.804746 eV Total energy + Delta-G solvation = -2671.705072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42526 -38.42206 -36.71230 -34.55035 -32.88447 -30.44618 -28.40462 -27.75977 -26.53342 -25.23954 -23.73466 -22.03391 -21.04730 -19.89582 -18.16596 -17.38675 -16.94906 -16.75838 -16.45387 -15.64437 -15.51075 -15.07198 -14.68743 -14.31350 -14.06314 -13.68807 -13.61490 -13.14533 -12.97284 -12.77146 -12.61726 -12.46326 -12.40426 -12.03979 -11.90454 -11.74323 -11.64326 -11.53826 -11.39328 -11.08354 -10.87175 -10.42317 -10.40454 -8.91862 -8.05256 -6.13279 1.43521 1.44290 1.51800 2.45785 2.87632 3.23556 3.53807 3.56735 3.68069 3.89374 3.96491 4.14611 4.27617 4.31518 4.53452 4.57115 4.59975 4.64508 4.74932 4.82865 4.86712 4.87483 4.93593 5.02000 5.07769 5.11274 5.17807 5.34056 5.38058 5.43077 5.45661 5.68238 5.74795 5.85419 6.09362 6.34167 6.70288 6.86875 6.99453 7.54593 8.99804 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.038746 B = 0.005863 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.489315 B = 4774.230058 C = 5025.371013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.222 3.778 4 H -0.003 1.003 5 C -0.500 4.500 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.678 5.678 14 C 0.054 3.946 15 H 0.044 0.956 16 C 0.062 3.938 17 O -0.370 6.370 18 C 0.066 3.934 19 C -0.151 4.151 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.130 4.130 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.259 0.741 29 H 0.334 0.666 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 0.997 16.119 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.015 0.985 5 C -0.539 4.539 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.311 5.311 14 C -0.057 4.057 15 H 0.062 0.938 16 C -0.015 4.015 17 O -0.289 6.289 18 C 0.026 3.974 19 C -0.189 4.189 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.168 4.168 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.155 0.845 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.102 1.737 15.775 15.871 hybrid contribution -0.217 -0.740 -1.281 1.495 sum -0.115 0.997 14.494 14.528 Atomic orbital electron populations 1.21444 0.95915 0.99377 1.00841 1.21949 0.96507 0.99906 0.99433 1.18969 0.93518 0.89438 0.86751 0.98463 1.21244 1.30447 1.11271 0.90943 0.93338 1.25556 0.95929 0.95864 1.00947 1.69989 1.39884 1.24925 1.21236 0.85750 0.79067 0.78682 0.78929 1.20411 1.21133 1.19686 1.60775 1.04287 1.62821 1.03194 1.22865 0.94234 0.96480 0.92147 0.93783 1.23474 0.96155 0.89263 0.92647 1.88957 1.80338 1.30139 1.29466 1.22910 0.94775 0.92233 0.87480 1.23391 0.99337 0.99443 0.96690 1.22778 0.96340 0.97276 1.00189 1.22989 0.97858 1.00218 0.95242 1.22942 1.00451 0.99278 0.94094 0.93635 0.93182 0.94206 0.91993 0.95490 0.93212 0.84528 0.91506 0.91201 0.87236 0.91754 0.91111 0.89089 0.91821 0.86817 0.90127 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.39 71.98 0.68 -4.18 16 2 C -0.14 -6.39 5.50 30.60 0.17 -6.22 16 3 C 0.22 11.02 2.19 44.17 0.10 11.11 16 4 H 0.00 -0.14 7.77 -2.39 -0.02 -0.16 16 5 C -0.50 -27.50 7.41 25.60 0.19 -27.31 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 7 C 0.02 0.84 5.28 84.66 0.45 1.29 16 8 N -0.92 -52.64 11.37 21.45 0.24 -52.40 16 9 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 N -0.68 -28.53 6.02 -467.64 -2.82 -31.34 16 14 C 0.05 1.89 3.19 46.03 0.15 2.04 16 15 H 0.04 1.59 7.28 -2.39 -0.02 1.57 16 16 C 0.06 2.25 7.28 72.51 0.53 2.78 16 17 O -0.37 -13.11 11.44 -148.98 -1.70 -14.82 16 18 C 0.07 1.76 1.13 -10.74 -0.01 1.75 16 19 C -0.15 -3.12 7.57 30.86 0.23 -2.89 16 20 C -0.13 -2.43 8.09 31.24 0.25 -2.18 16 21 C -0.13 -2.71 7.61 30.86 0.23 -2.47 16 22 C -0.13 -3.52 6.16 31.36 0.19 -3.32 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 1.83 6.32 -2.38 -0.02 1.81 16 25 H 0.04 1.82 7.18 -2.39 -0.02 1.81 16 26 H 0.06 3.27 6.21 -2.39 -0.01 3.26 16 27 H 0.03 1.12 7.52 -2.39 -0.02 1.10 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.33 13.12 5.89 -89.69 -0.53 12.59 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.98 8.06 -2.39 -0.02 2.96 16 32 H 0.11 1.76 7.97 -2.38 -0.02 1.74 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.08 2.19 7.57 -2.39 -0.02 2.17 16 39 H 0.10 2.12 7.84 -2.38 -0.02 2.11 16 Total: -1.00 -61.05 303.20 1.39 -59.66 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.49 Total: 22.17 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 3.15 Total: -29.61 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -2.57 Total: -83.75 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.70 Total: -14.82 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.05 1.39 -59.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688266883.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.622 kcal (2) G-P(sol) polarization free energy of solvation -61.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds