Wall clock time and date at job start Mon Mar 30 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47172 * 2 1 4 4 H 1.08994 * 109.47042 * 302.47237 * 3 2 1 5 5 C 1.50695 * 109.47211 * 182.46977 * 3 2 1 6 6 H 1.07993 * 120.00114 * 240.00214 * 5 3 2 7 7 C 1.37879 * 120.00102 * 59.99850 * 5 3 2 8 8 N 1.31510 * 119.99897 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00122 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46854 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46765 * 120.00309 * 9 7 5 12 12 H 1.48497 * 109.46925 * 240.00107 * 9 7 5 13 13 N 1.46903 * 109.46723 * 62.46923 * 3 2 1 14 14 C 1.46903 * 110.99660 * 64.34364 * 13 3 2 15 15 C 1.46904 * 110.99605 * 188.29301 * 13 3 2 16 16 C 1.53002 * 109.46867 * 164.23531 * 15 13 3 17 17 C 1.55595 * 120.00569 * 109.60999 * 16 15 13 18 18 C 1.53003 * 60.08240 * 112.02273 * 17 16 15 19 19 H 1.09004 * 119.80833 * 247.26091 * 18 17 16 20 20 C 1.54476 * 118.06347 * 90.99722 * 18 17 16 21 21 O 1.44422 * 104.90255 * 319.80459 * 20 18 17 22 22 C 1.44518 * 105.22800 * 319.63965 * 21 20 18 23 23 H 1.08998 * 109.47678 * 54.95862 * 1 2 3 24 24 H 1.09000 * 109.46930 * 174.96247 * 1 2 3 25 25 H 1.09000 * 109.46829 * 294.95769 * 1 2 3 26 26 H 1.09009 * 109.47165 * 240.00347 * 2 1 3 27 27 H 1.09001 * 109.47821 * 120.00231 * 2 1 3 28 28 H 0.97000 * 120.00263 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.46796 * 183.94993 * 14 13 3 30 30 H 1.08994 * 109.47397 * 303.95072 * 14 13 3 31 31 H 1.08999 * 109.47205 * 63.95424 * 14 13 3 32 32 H 1.08997 * 109.46885 * 44.23268 * 15 13 3 33 33 H 1.08994 * 109.47262 * 284.23509 * 15 13 3 34 34 H 1.09001 * 117.11504 * 4.41503 * 17 16 15 35 35 H 1.08989 * 118.04878 * 219.22418 * 17 16 15 36 36 H 1.09003 * 110.37321 * 78.69785 * 20 18 17 37 37 H 1.09007 * 110.37266 * 200.91974 * 20 18 17 38 38 H 1.09001 * 110.26883 * 281.53431 * 22 21 20 39 39 H 1.08996 * 110.49724 * 159.28817 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6409 1.9690 -0.8669 5 6 3.5457 1.4430 -0.0612 6 1 4.1183 1.8990 0.7328 7 6 4.1923 0.8610 -1.1309 8 7 3.4951 0.3060 -2.0980 9 14 6.0588 0.8622 -1.2072 10 1 6.6028 1.5448 -0.0058 11 1 6.5534 -0.5374 -1.2472 12 1 6.5038 1.5796 -2.4288 13 7 1.5996 2.1175 1.2282 14 6 2.2025 1.4966 2.4152 15 6 1.9000 3.5545 1.1758 16 6 1.0994 4.2827 2.2573 17 6 1.8277 4.8767 3.4973 18 6 1.1910 5.8108 2.4663 19 1 1.8240 6.4475 1.8481 20 6 -0.2739 6.2478 2.6884 21 8 -0.9466 5.0627 3.1667 22 6 -0.4102 3.9772 2.3777 23 1 -0.3634 0.5900 -0.8413 24 1 -0.3633 -1.0237 -0.0902 25 1 -0.3633 0.4336 0.9317 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.9500 -0.1030 -2.8508 29 1 1.8059 1.9696 3.3137 30 1 1.9647 0.4330 2.4293 31 1 3.2842 1.6266 2.3835 32 1 1.6280 3.9470 0.1960 33 1 2.9654 3.7094 1.3462 34 1 2.9157 4.8124 3.5125 35 1 1.3389 4.7922 4.4678 36 1 -0.3245 7.0403 3.4351 37 1 -0.7164 6.5827 1.7502 38 1 -0.8741 3.9621 1.3915 39 1 -0.5652 3.0245 2.8839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689327331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:20 Heat of formation + Delta-G solvation = -26.451647 kcal Electronic energy + Delta-G solvation = -18164.299949 eV Core-core repulsion = 15493.357572 eV Total energy + Delta-G solvation = -2670.942377 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25217 -38.81961 -35.70923 -34.40486 -32.95324 -29.91068 -28.64061 -27.91189 -26.53432 -25.67607 -23.68805 -21.56949 -20.79794 -20.16136 -18.42057 -17.22520 -17.11069 -16.63885 -16.11746 -16.01353 -15.34996 -14.94067 -14.69893 -14.24152 -14.03624 -13.75393 -13.40490 -13.30039 -13.11151 -12.76542 -12.61199 -12.54026 -12.32970 -12.25942 -12.13984 -11.93876 -11.58301 -11.37132 -11.04116 -10.89982 -10.77887 -10.44080 -10.25271 -8.91993 -8.02894 -6.25616 1.34641 1.38299 1.46991 2.39212 2.53680 3.00751 3.15294 3.35608 3.70705 3.89911 3.96692 4.05459 4.39035 4.52421 4.58635 4.67150 4.72486 4.76791 4.80487 4.84539 4.88231 4.93647 4.94248 5.02244 5.07034 5.13279 5.16055 5.23526 5.33624 5.45149 5.51805 5.64710 5.81068 5.84098 6.07872 6.20817 6.40251 6.67819 6.96738 7.45555 8.91863 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.028409 B = 0.007166 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.361289 B = 3906.582701 C = 4477.633531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.527 5.527 14 C 0.044 3.956 15 C 0.121 3.879 16 C -0.168 4.168 17 C -0.127 4.127 18 C -0.191 4.191 19 H 0.128 0.872 20 C 0.071 3.929 21 O -0.395 6.395 22 C 0.100 3.900 23 H 0.032 0.968 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.009 0.991 32 H 0.052 0.948 33 H 0.021 0.979 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.962 8.261 8.685 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.590 4.590 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.250 5.250 14 C -0.105 4.105 15 C -0.007 4.007 16 C -0.168 4.168 17 C -0.164 4.164 18 C -0.209 4.209 19 H 0.146 0.854 20 C -0.005 4.005 21 O -0.314 6.314 22 C 0.024 3.976 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.635 8.095 8.699 13.151 hybrid contribution 2.356 -0.147 -0.869 2.515 sum -3.280 7.947 7.830 11.629 Atomic orbital electron populations 1.21550 0.96189 0.99552 1.00854 1.21439 0.94505 0.98128 1.00333 1.19081 0.91401 0.91475 0.86817 0.97874 1.22029 0.94103 1.36844 1.05997 0.93212 1.25590 1.01750 0.95007 0.95441 1.70005 1.36282 1.38423 1.10315 0.85726 0.81733 0.77704 0.77764 1.19755 1.20660 1.20800 1.62348 1.57581 1.01573 1.03451 1.22135 0.96289 0.99279 0.92764 1.20980 0.95288 0.88783 0.95694 1.23486 0.96592 0.96293 1.00469 1.23323 0.99267 1.00277 0.93555 1.24242 0.99066 0.92989 1.04651 0.85391 1.23041 0.88031 0.88578 1.00837 1.89111 1.64274 1.17756 1.60277 1.22547 0.89076 0.90498 0.95494 0.94834 0.93814 0.92326 0.92156 0.94902 0.92966 0.91506 0.92562 0.97217 0.92989 0.96065 0.88100 0.88204 0.87081 0.90688 0.92021 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.71 71.98 0.70 -4.16 16 2 C -0.11 -4.95 5.06 30.59 0.15 -4.79 16 3 C 0.22 10.69 1.73 44.17 0.08 10.76 16 4 H 0.00 0.18 7.90 -2.39 -0.02 0.16 16 5 C -0.55 -29.24 7.30 25.60 0.19 -29.05 16 6 H 0.05 2.66 5.89 -2.91 -0.02 2.65 16 7 C 0.02 1.19 5.30 84.66 0.45 1.64 16 8 N -0.91 -51.51 11.30 21.45 0.24 -51.27 16 9 Si 0.94 43.17 29.54 68.60 2.03 45.20 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.53 -21.24 3.79 -901.46 -3.42 -24.66 16 14 C 0.04 1.66 8.74 127.69 1.12 2.77 16 15 C 0.12 4.51 4.88 86.30 0.42 4.93 16 16 C -0.17 -4.96 1.96 -50.27 -0.10 -5.06 16 17 C -0.13 -3.23 9.83 31.49 0.31 -2.92 16 18 C -0.19 -4.59 7.08 -9.78 -0.07 -4.66 16 19 H 0.13 2.82 8.14 -2.38 -0.02 2.80 16 20 C 0.07 1.57 7.52 72.48 0.55 2.12 16 21 O -0.39 -11.06 11.35 -148.98 -1.69 -12.75 16 22 C 0.10 2.94 6.97 72.49 0.50 3.44 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 2.14 7.83 -2.39 -0.02 2.12 16 26 H 0.06 3.22 6.01 -2.38 -0.01 3.20 16 27 H 0.03 1.51 6.31 -2.39 -0.02 1.50 16 28 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.07 2.18 7.50 -2.38 -0.02 2.16 16 30 H 0.06 2.15 6.19 -2.39 -0.01 2.13 16 31 H 0.01 0.39 6.33 -2.39 -0.02 0.37 16 32 H 0.05 2.07 7.84 -2.39 -0.02 2.05 16 33 H 0.02 0.85 7.33 -2.39 -0.02 0.83 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.10 2.41 8.09 -2.39 -0.02 2.39 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -57.44 304.05 2.46 -54.98 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.01 Total: 13.48 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 4.29 Total: -24.99 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.18 Total: -75.93 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.69 Total: -12.75 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -57.44 2.46 -54.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689327331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.531 kcal (2) G-P(sol) polarization free energy of solvation -57.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds