Wall clock time and date at job start Mon Mar 30 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47391 * 2 1 4 4 H 1.09002 * 109.46780 * 305.69638 * 3 2 1 5 5 C 1.50694 * 109.47125 * 185.69896 * 3 2 1 6 6 H 1.08007 * 119.99728 * 239.99531 * 5 3 2 7 7 C 1.37872 * 120.00191 * 60.00003 * 5 3 2 8 8 N 1.31513 * 120.00187 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00162 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46892 * 89.99711 * 9 7 5 11 11 H 1.48493 * 109.47174 * 210.00042 * 9 7 5 12 12 H 1.48507 * 109.46725 * 330.00081 * 9 7 5 13 13 N 1.46903 * 109.46975 * 65.69451 * 3 2 1 14 14 C 1.46899 * 110.99717 * 193.83089 * 13 3 2 15 15 C 1.46907 * 110.99592 * 69.87983 * 13 3 2 16 16 C 1.53003 * 109.46545 * 199.66379 * 15 13 3 17 17 C 1.52998 * 119.80428 * 248.97242 * 16 15 13 18 18 C 1.54682 * 122.28976 * 176.53599 * 16 15 13 19 19 H 1.08998 * 122.47561 * 359.93258 * 18 16 15 20 20 C 1.54476 * 103.98174 * 223.13621 * 18 16 15 21 21 O 1.44428 * 104.89911 * 336.14745 * 20 18 16 22 22 C 1.44429 * 105.27148 * 40.45523 * 21 20 18 23 23 H 1.09000 * 109.46772 * 295.00598 * 1 2 3 24 24 H 1.08993 * 109.47428 * 55.00577 * 1 2 3 25 25 H 1.09006 * 109.47178 * 175.01246 * 1 2 3 26 26 H 1.09000 * 109.47550 * 240.00012 * 2 1 3 27 27 H 1.09003 * 109.47529 * 120.00059 * 2 1 3 28 28 H 0.97003 * 120.00328 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46937 * 296.04349 * 14 13 3 30 30 H 1.08997 * 109.46929 * 56.05205 * 14 13 3 31 31 H 1.08997 * 109.46729 * 176.05072 * 14 13 3 32 32 H 1.08992 * 109.47092 * 79.66455 * 15 13 3 33 33 H 1.08999 * 109.47166 * 319.65865 * 15 13 3 34 34 H 1.09007 * 117.43644 * 354.35565 * 17 16 15 35 35 H 1.08998 * 117.43449 * 138.99679 * 17 16 15 36 36 H 1.08995 * 110.37325 * 217.26512 * 20 18 16 37 37 H 1.08996 * 110.37183 * 95.03247 * 20 18 16 38 38 H 1.09003 * 110.37325 * 78.32115 * 22 21 20 39 39 H 1.09003 * 110.36945 * 200.65487 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1411 6 1 4.1546 1.8863 0.6299 7 6 4.1290 0.8834 -1.2543 8 7 3.3811 0.3463 -2.1933 9 14 5.9888 0.8869 -1.4295 10 1 6.5457 -0.3471 -0.8192 11 1 6.3503 0.9338 -2.8690 12 1 6.5487 2.0767 -0.7394 13 7 1.6658 2.0942 1.2623 14 6 1.8408 3.5501 1.1751 15 6 2.4289 1.5386 2.3879 16 6 1.7066 1.8549 3.6991 17 6 2.3236 2.8467 4.6872 18 6 2.2130 1.3392 5.0667 19 1 3.1077 0.7246 5.1656 20 6 0.9300 0.8665 5.7856 21 8 -0.1401 1.6099 5.1627 22 6 0.1795 1.6288 3.7543 23 1 -0.3633 0.4344 0.9314 24 1 -0.3634 0.5893 -0.8418 25 1 -0.3634 -1.0238 -0.0893 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7952 -0.0490 -2.9764 29 1 2.8961 3.7811 1.0299 30 1 1.2653 3.9355 0.3335 31 1 1.4909 4.0139 2.0973 32 1 3.4246 1.9816 2.4056 33 1 2.5138 0.4582 2.2713 34 1 3.3187 3.2292 4.4596 35 1 1.6516 3.5509 5.1776 36 1 0.9838 1.0982 6.8493 37 1 0.7847 -0.2036 5.6380 38 1 -0.0799 0.6757 3.2934 39 1 -0.3433 2.4462 3.2576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689327337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:23 Heat of formation + Delta-G solvation = -11.489387 kcal Electronic energy + Delta-G solvation = -18311.776394 eV Core-core repulsion = 15641.482829 eV Total energy + Delta-G solvation = -2670.293564 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05869 -37.10615 -34.29675 -32.61252 -31.18669 -28.74244 -26.83064 -26.38305 -25.32378 -23.81742 -21.84511 -20.54734 -19.37219 -18.69803 -16.59389 -15.71307 -15.66378 -15.06882 -14.81726 -14.03474 -13.88721 -13.57206 -12.97656 -12.77083 -12.52896 -12.28513 -12.15682 -11.59070 -11.29576 -11.25460 -11.12059 -11.04607 -10.88606 -10.63092 -10.54637 -10.12101 -9.79413 -9.68708 -9.60436 -9.44706 -9.15125 -8.98042 -8.38471 -7.17424 -6.01948 -4.15504 3.23394 3.31212 3.33381 3.70143 4.15672 4.36367 4.73453 4.91339 5.05606 5.16943 5.22556 5.44936 5.57072 5.68360 5.79857 5.96191 5.99230 6.11533 6.17604 6.27129 6.27956 6.35502 6.43410 6.45584 6.59380 6.67741 6.70162 6.72416 6.99554 7.11040 7.16620 7.35309 7.56971 7.73796 7.96434 8.12079 8.30548 8.45419 8.94840 9.52397 10.97337 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.028327 B = 0.007489 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.204956 B = 3737.861609 C = 4154.435511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.535 5.535 14 C 0.037 3.963 15 C 0.112 3.888 16 C -0.143 4.143 17 C -0.136 4.136 18 C -0.214 4.214 19 H 0.120 0.880 20 C 0.076 3.924 21 O -0.385 6.385 22 C 0.093 3.907 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.025 0.975 26 H 0.092 0.908 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.227 1.533 10.696 11.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.258 5.258 14 C -0.112 4.112 15 C -0.017 4.017 16 C -0.144 4.144 17 C -0.172 4.172 18 C -0.233 4.233 19 H 0.137 0.863 20 C -0.001 4.001 21 O -0.304 6.304 22 C 0.017 3.983 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.110 0.890 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.922 1.433 10.666 11.454 hybrid contribution 2.313 -0.022 -0.493 2.365 sum -1.609 1.412 10.173 10.396 Atomic orbital electron populations 1.21703 0.98835 0.98404 1.00470 1.21592 0.92269 0.99209 1.01752 1.19327 0.93168 0.91285 0.85534 0.94379 1.21763 0.92887 1.38365 1.05319 0.92655 1.24909 0.97725 0.95059 0.95706 1.69871 1.34696 1.38396 1.09309 0.86697 0.86270 0.78343 0.77294 1.20703 1.21157 1.20125 1.62341 1.54944 1.03173 1.05355 1.22146 0.99342 0.89922 0.99775 1.21210 0.93363 1.00337 0.86788 1.23427 0.95665 1.03527 0.91761 1.23326 1.01652 0.90705 1.01559 1.24566 1.00083 0.98060 1.00621 0.86256 1.22793 0.84434 0.95554 0.97309 1.89097 1.45335 1.75239 1.20742 1.22722 0.92312 1.02243 0.81015 0.93596 0.94164 0.95620 0.88993 0.95062 0.92868 0.95765 0.92819 0.93604 0.94497 0.90457 0.88417 0.88991 0.89600 0.91852 0.91231 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.75 37.15 0.36 -2.36 16 2 C -0.11 -2.53 5.24 -26.73 -0.14 -2.67 16 3 C 0.21 5.07 1.67 -68.86 -0.12 4.96 16 4 H 0.04 1.02 7.94 -51.93 -0.41 0.61 16 5 C -0.54 -14.17 7.30 -34.44 -0.25 -14.42 16 6 H 0.06 1.45 6.09 -52.48 -0.32 1.13 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.83 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.53 -10.77 3.78 -236.28 -0.89 -11.67 16 14 C 0.04 0.70 9.18 60.06 0.55 1.25 16 15 C 0.11 2.11 4.25 -3.82 -0.02 2.09 16 16 C -0.14 -2.26 2.04 -152.85 -0.31 -2.57 16 17 C -0.14 -1.91 9.79 -25.21 -0.25 -2.15 16 18 C -0.21 -2.94 7.30 -87.44 -0.64 -3.58 16 19 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 20 C 0.08 0.98 7.54 37.93 0.29 1.27 16 21 O -0.39 -5.97 11.34 -35.23 -0.40 -6.37 16 22 C 0.09 1.47 6.85 37.93 0.26 1.73 16 23 H 0.04 0.86 7.88 -51.93 -0.41 0.45 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 2.39 5.94 -51.93 -0.31 2.08 16 27 H 0.03 0.71 6.27 -51.93 -0.33 0.38 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.02 0.49 7.47 -51.93 -0.39 0.10 16 30 H 0.05 1.00 8.02 -51.93 -0.42 0.58 16 31 H 0.05 0.76 7.65 -51.93 -0.40 0.37 16 32 H 0.04 0.74 6.61 -51.93 -0.34 0.40 16 33 H 0.08 1.57 6.05 -51.93 -0.31 1.26 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.09 1.26 8.09 -51.93 -0.42 0.84 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 39 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -26.84 304.89 -8.02 -34.85 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.57 Total: 1.33 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -0.35 Total: -14.72 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.27 Total: -35.50 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.40 Total: -6.37 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.84 -8.02 -34.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689327337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.365 kcal (2) G-P(sol) polarization free energy of solvation -26.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds