Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 H 1.08996 * 109.47061 * 182.82527 * 3 2 1 5 5 C 1.50693 * 109.47084 * 62.82172 * 3 2 1 6 6 H 1.07999 * 120.00416 * 242.68760 * 5 3 2 7 7 C 1.37878 * 120.00139 * 62.69128 * 5 3 2 8 8 N 1.31506 * 120.00313 * 195.35662 * 7 5 3 9 9 Si 1.86807 * 119.99609 * 15.08327 * 7 5 3 10 10 H 1.48504 * 109.47126 * 95.04356 * 9 7 5 11 11 H 1.48508 * 109.46937 * 215.04079 * 9 7 5 12 12 H 1.48498 * 109.47265 * 335.04269 * 9 7 5 13 13 N 1.46903 * 109.46889 * 302.82396 * 3 2 1 14 14 C 1.47209 * 111.00153 * 303.37102 * 13 3 2 15 15 C 1.51416 * 108.66072 * 171.27804 * 14 13 3 16 16 C 1.53070 * 111.46516 * 60.83087 * 15 14 13 17 17 H 1.09002 * 112.25415 * 76.79832 * 16 15 14 18 18 C 1.55299 * 107.12812 * 200.86030 * 16 15 14 19 19 O 1.43367 * 107.34558 * 92.54095 * 18 16 15 20 20 C 1.43994 * 109.98021 * 0.12569 * 19 18 16 21 21 C 1.53974 * 104.49409 * 23.58588 * 20 19 18 22 22 H 1.08998 * 109.18319 * 78.35781 * 21 20 19 23 23 C 1.46648 * 110.99761 * 181.10693 * 13 3 2 24 24 H 1.09005 * 109.47271 * 303.92442 * 1 2 3 25 25 H 1.09003 * 109.47194 * 63.92481 * 1 2 3 26 26 H 1.08998 * 109.47417 * 183.92837 * 1 2 3 27 27 H 1.09000 * 109.47148 * 240.00189 * 2 1 3 28 28 H 1.09000 * 109.47179 * 120.00096 * 2 1 3 29 29 H 0.97002 * 120.00389 * 179.72738 * 8 7 5 30 30 H 1.08995 * 109.68054 * 290.62896 * 14 13 3 31 31 H 1.09011 * 109.67764 * 51.17798 * 14 13 3 32 32 H 1.09000 * 108.18746 * 300.74119 * 15 14 13 33 33 H 1.08997 * 109.51510 * 181.79888 * 15 14 13 34 34 H 1.08995 * 109.86902 * 211.98186 * 18 16 15 35 35 H 1.09000 * 109.86912 * 333.10334 * 18 16 15 36 36 H 1.08998 * 110.43243 * 264.83171 * 20 19 18 37 37 H 1.09008 * 110.43168 * 142.33549 * 20 19 18 38 38 H 1.08990 * 109.00092 * 304.34439 * 23 13 3 39 39 H 1.08999 * 108.99848 * 63.11258 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1287 1.4429 -0.0507 5 6 1.5956 2.1324 1.2639 6 1 0.9358 2.9858 1.2100 7 6 2.0313 1.6743 2.4892 8 7 1.4260 2.0635 3.5899 9 14 3.4767 0.4948 2.5850 10 1 4.7258 1.2610 2.8258 11 1 3.2609 -0.4630 3.6994 12 1 3.5924 -0.2514 1.3064 13 7 1.4953 2.1544 -1.1639 14 6 1.8427 1.4621 -2.4158 15 6 1.0826 2.1093 -3.5542 16 6 1.4522 3.5869 -3.7060 17 1 2.4193 3.7229 -4.1901 18 6 0.2949 4.2703 -4.4840 19 8 -0.6238 4.7902 -3.5139 20 6 -0.1518 4.5006 -2.1846 21 6 1.3676 4.3122 -2.3477 22 1 1.8435 5.2898 -2.4245 23 6 1.9848 3.5360 -1.2112 24 1 -0.3634 0.5736 0.8528 25 1 -0.3634 0.4517 -0.9231 26 1 -0.3634 -1.0252 0.0704 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7301 1.7380 4.4516 30 1 2.9130 1.5533 -2.6008 31 1 1.5710 0.4091 -2.3405 32 1 0.0167 2.0261 -3.3423 33 1 1.3053 1.5865 -4.4843 34 1 0.6881 5.0830 -5.0946 35 1 -0.2087 3.5393 -5.1165 36 1 -0.6105 3.5860 -1.8089 37 1 -0.3621 5.3354 -1.5159 38 1 1.7426 4.0306 -0.2707 39 1 3.0676 3.5247 -1.3360 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690733648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -40.975424 kcal Electronic energy + Delta-G solvation = -18678.484292 eV Core-core repulsion = 16006.912117 eV Total energy + Delta-G solvation = -2671.572175 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16922 -37.35394 -34.26838 -32.01900 -31.65810 -30.52592 -28.21804 -26.44455 -24.44345 -22.86657 -22.32568 -21.52643 -19.46709 -18.59512 -16.47691 -16.32081 -15.55572 -15.36127 -14.77353 -14.20438 -13.94841 -13.48624 -13.33967 -13.02053 -12.73886 -12.62075 -12.32963 -12.02912 -11.81366 -11.28182 -11.08974 -10.91951 -10.70653 -10.55107 -10.48335 -10.13435 -10.06686 -9.94918 -9.73874 -9.29604 -9.21376 -8.95264 -8.45612 -7.36480 -6.11107 -4.03966 3.24554 3.34584 3.37183 4.13322 4.39732 4.61497 4.69624 4.90418 5.12307 5.21997 5.36102 5.50471 5.56571 5.71118 5.75885 5.81262 5.98757 6.05728 6.06980 6.13144 6.16741 6.24685 6.25333 6.37396 6.41055 6.51343 6.59726 6.69269 6.78684 6.95323 7.07412 7.16384 7.23961 7.50515 7.67847 7.94612 8.04854 8.63523 8.99305 9.54839 11.01445 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034523 B = 0.007856 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.847706 B = 3563.481435 C = 3776.316451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.116 4.116 3 C 0.189 3.811 4 H -0.009 1.009 5 C -0.504 4.504 6 H 0.081 0.919 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.858 3.142 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.255 1.255 13 N -0.508 5.508 14 C 0.043 3.957 15 C -0.108 4.108 16 C -0.117 4.117 17 H 0.086 0.914 18 C 0.057 3.943 19 O -0.394 6.394 20 C 0.062 3.938 21 C -0.112 4.112 22 H 0.074 0.926 23 C 0.071 3.929 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.020 0.980 27 H 0.028 0.972 28 H 0.054 0.946 29 H 0.263 0.737 30 H 0.020 0.980 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 0.705 -13.226 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 C 0.082 3.918 4 H 0.008 0.992 5 C -0.542 4.542 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.685 3.315 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.179 1.179 13 N -0.233 5.233 14 C -0.086 4.086 15 C -0.146 4.146 16 C -0.136 4.136 17 H 0.105 0.895 18 C -0.020 4.020 19 O -0.313 6.313 20 C -0.014 4.014 21 C -0.131 4.131 22 H 0.092 0.908 23 C -0.057 4.057 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.143 0.803 -13.004 13.029 hybrid contribution 2.063 -0.779 0.201 2.215 sum 2.206 0.023 -12.803 12.991 Atomic orbital electron populations 1.21489 0.95581 0.98344 1.02875 1.21946 0.97162 0.97665 0.98663 1.19642 0.91850 0.90964 0.89335 0.99151 1.20805 1.29896 1.15735 0.87767 0.90136 1.24839 0.96236 0.95759 0.95713 1.69958 1.39160 1.45561 0.98102 0.87318 0.84068 0.81755 0.78338 1.21017 1.21305 1.17899 1.62382 1.58549 1.01003 1.01353 1.21955 0.96577 0.99036 0.91017 1.21345 1.01761 0.93715 0.97748 1.22674 0.98533 0.96360 0.95992 0.89523 1.23336 0.90024 0.96994 0.91655 1.88409 1.47528 1.79557 1.15850 1.23312 0.92794 1.01742 0.83523 1.22071 0.97191 0.98952 0.94857 0.90781 1.21285 0.95631 0.90670 0.98144 0.90997 0.93233 0.96072 0.95335 0.92789 0.92729 0.96146 0.90419 0.90996 0.92307 0.92320 0.91723 0.90052 0.90244 0.88793 0.95982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.50 37.15 0.35 -2.20 16 2 C -0.12 -2.47 4.43 -26.73 -0.12 -2.59 16 3 C 0.19 4.26 1.28 -68.86 -0.09 4.17 16 4 H -0.01 -0.21 6.90 -51.93 -0.36 -0.57 16 5 C -0.50 -13.25 7.08 -34.44 -0.24 -13.50 16 6 H 0.08 2.32 7.11 -52.49 -0.37 1.94 16 7 C 0.08 2.12 5.34 -17.82 -0.10 2.02 16 8 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 9 Si 0.86 20.69 25.74 -169.99 -4.38 16.32 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.81 5.36 56.52 0.30 -5.51 16 13 N -0.51 -9.82 3.42 -230.34 -0.79 -10.61 16 14 C 0.04 0.70 4.99 -4.45 -0.02 0.68 16 15 C -0.11 -1.50 4.81 -27.50 -0.13 -1.63 16 16 C -0.12 -1.55 3.68 -88.73 -0.33 -1.88 16 17 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 18 C 0.06 0.73 7.11 38.38 0.27 1.01 16 19 O -0.39 -6.27 11.37 -35.23 -0.40 -6.67 16 20 C 0.06 0.99 6.80 37.67 0.26 1.25 16 21 C -0.11 -1.69 2.97 -90.56 -0.27 -1.96 16 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 23 C 0.07 1.29 4.62 -5.04 -0.02 1.27 16 24 H 0.07 1.67 7.18 -51.93 -0.37 1.30 16 25 H 0.05 0.95 7.48 -51.93 -0.39 0.56 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.54 6.33 -51.93 -0.33 0.21 16 28 H 0.05 1.22 4.65 -51.93 -0.24 0.98 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.02 0.34 8.07 -51.93 -0.42 -0.08 16 31 H 0.08 1.28 5.84 -51.92 -0.30 0.97 16 32 H 0.07 1.09 7.30 -51.93 -0.38 0.71 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.77 7.75 -51.93 -0.40 0.37 16 36 H 0.08 1.44 7.41 -51.93 -0.39 1.06 16 37 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 38 H 0.09 1.92 6.41 -51.93 -0.33 1.58 16 39 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 LS Contribution 284.37 15.07 4.29 4.29 Total: -1.00 -28.13 284.37 -7.42 -35.54 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.48 Total: -0.07 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -0.44 Total: -13.36 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.01 Total: -36.04 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.40 Total: -6.67 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.38 Total: 16.32 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.13 -7.42 -35.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690733648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.433 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds