Wall clock time and date at job start Mon Mar 30 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47239 * 2 1 4 4 H 1.08998 * 109.47094 * 56.38190 * 3 2 1 5 5 C 1.50695 * 109.47178 * 176.38992 * 3 2 1 6 6 H 1.08001 * 120.00400 * 63.72777 * 5 3 2 7 7 C 1.37887 * 119.99692 * 243.72911 * 5 3 2 8 8 N 1.31510 * 119.99730 * 15.69933 * 7 5 3 9 9 Si 1.86796 * 119.99793 * 195.70208 * 7 5 3 10 10 H 1.48500 * 109.46982 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47180 * 299.99704 * 9 7 5 12 12 H 1.48503 * 109.47419 * 59.99896 * 9 7 5 13 13 N 1.46903 * 109.46926 * 296.38673 * 3 2 1 14 14 C 1.47547 * 110.99896 * 257.58668 * 13 3 2 15 15 C 1.53578 * 88.01053 * 221.66224 * 14 13 3 16 16 C 1.47076 * 110.99816 * 161.73080 * 13 3 2 17 17 C 1.52940 * 113.56692 * 23.40357 * 16 13 3 18 18 C 1.53251 * 108.86882 * 175.99501 * 17 16 13 19 19 O 1.42888 * 109.34250 * 55.46207 * 18 17 16 20 20 C 1.42892 * 114.35582 * 297.08010 * 19 18 17 21 21 C 1.52944 * 113.57008 * 253.40964 * 16 13 3 22 22 H 1.08997 * 109.47193 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47087 * 299.99874 * 1 2 3 24 24 H 1.09000 * 109.47090 * 60.00274 * 1 2 3 25 25 H 1.08999 * 109.47087 * 240.00126 * 2 1 3 26 26 H 1.09001 * 109.47312 * 120.00229 * 2 1 3 27 27 H 0.97001 * 120.00634 * 5.63827 * 8 7 5 28 28 H 1.09001 * 113.46728 * 336.45053 * 14 13 3 29 29 H 1.09005 * 113.46674 * 106.87531 * 14 13 3 30 30 H 1.09000 * 114.19011 * 272.08388 * 15 14 13 31 31 H 1.09001 * 114.36444 * 139.34041 * 15 14 13 32 32 H 1.08995 * 109.57306 * 295.81563 * 17 16 13 33 33 H 1.09002 * 109.56804 * 56.18678 * 17 16 13 34 34 H 1.08991 * 109.49636 * 295.49780 * 18 17 16 35 35 H 1.09000 * 109.49143 * 175.41756 * 18 17 16 36 36 H 1.09005 * 109.49500 * 302.96762 * 20 19 18 37 37 H 1.09000 * 109.52057 * 182.89674 * 20 19 18 38 38 H 1.09005 * 109.57590 * 303.82590 * 21 16 13 39 39 H 1.08999 * 109.57608 * 64.19332 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6247 1.9747 0.8558 5 6 3.5443 1.4434 0.0895 6 1 4.1330 1.0122 -0.7068 7 6 4.1693 1.9948 1.1880 8 7 3.4820 2.2365 2.2829 9 14 5.9919 2.3982 1.1209 10 1 6.4190 2.9764 2.4203 11 1 6.7639 1.1581 0.8539 12 1 6.2419 3.3804 0.0354 13 7 1.6229 2.1093 -1.2407 14 6 2.7434 2.1962 -2.1968 15 6 2.2870 3.6266 -2.5194 16 6 1.7016 3.5717 -1.1053 17 6 2.6779 4.0338 -0.0224 18 6 2.7506 5.5645 -0.0413 19 8 1.4355 6.1027 0.1092 20 6 0.5370 5.7679 -0.9502 21 6 0.3357 4.2490 -0.9839 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.5567 1.9529 2.3474 28 1 3.7236 2.1500 -1.7221 29 1 2.6497 1.5104 -3.0388 30 1 1.5394 3.6893 -3.3102 31 1 3.1006 4.3421 -2.6385 32 1 2.3274 3.6969 0.9531 33 1 3.6661 3.6189 -0.2207 34 1 3.1734 5.8969 -0.9892 35 1 3.3805 5.9088 0.7790 36 1 0.9549 6.1007 -1.9004 37 1 -0.4220 6.2583 -0.7830 38 1 -0.2820 3.9816 -1.8413 39 1 -0.1523 3.9249 -0.0648 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707535903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:31 Heat of formation + Delta-G solvation = -4.843879 kcal Electronic energy + Delta-G solvation = -19294.915468 eV Core-core repulsion = 16624.910074 eV Total energy + Delta-G solvation = -2670.005394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56881 -37.38588 -34.28379 -32.23062 -30.83934 -30.05351 -28.03292 -25.63138 -23.56225 -23.18124 -22.77315 -20.86007 -19.82436 -17.77812 -16.43135 -15.78936 -15.44400 -15.13426 -14.40296 -14.06760 -13.92687 -13.78246 -13.11421 -12.87691 -12.60020 -12.41768 -11.83113 -11.59684 -11.14183 -10.95722 -10.87792 -10.60736 -10.53746 -10.35537 -10.24275 -10.19965 -10.05360 -9.73843 -9.41193 -9.31097 -8.99495 -8.62217 -8.25097 -7.37990 -6.50962 -4.19147 3.29630 3.33364 3.50420 4.35935 4.39423 4.93188 5.11582 5.31482 5.42004 5.59562 5.63205 5.78382 5.85943 5.99853 6.00127 6.11452 6.15225 6.19135 6.22201 6.33046 6.34101 6.52165 6.54220 6.65950 6.69197 6.78998 6.82142 6.94629 7.06352 7.16837 7.19621 7.40347 7.48783 7.69508 7.76158 8.00252 8.27581 8.44264 8.67274 9.45945 10.80517 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.013855 C = 0.010078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.267290 B = 2020.402082 C = 2777.652241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C 0.152 3.848 4 H 0.051 0.949 5 C -0.621 4.621 6 H 0.059 0.941 7 C 0.038 3.962 8 N -0.888 5.888 9 Si 1.042 2.958 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.472 5.472 14 C -0.004 4.004 15 C -0.150 4.150 16 C 0.071 3.929 17 C -0.155 4.155 18 C 0.061 3.939 19 O -0.390 6.390 20 C 0.067 3.933 21 C -0.129 4.129 22 H 0.029 0.971 23 H 0.038 0.962 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.273 0.727 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 3.996 -6.430 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C 0.045 3.955 4 H 0.069 0.931 5 C -0.659 4.659 6 H 0.077 0.923 7 C -0.169 4.169 8 N -0.523 5.523 9 Si 0.870 3.130 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.194 5.194 14 C -0.133 4.133 15 C -0.188 4.188 16 C -0.020 4.020 17 C -0.193 4.193 18 C -0.016 4.016 19 O -0.309 6.309 20 C -0.010 4.010 21 C -0.167 4.167 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.936 4.407 -5.543 7.341 hybrid contribution -0.435 -0.764 -0.786 1.179 sum -2.371 3.643 -6.329 7.678 Atomic orbital electron populations 1.21745 0.98163 0.98921 1.01149 1.21458 0.93085 0.99223 0.99674 1.19938 0.94510 0.91225 0.89858 0.93126 1.22176 0.91997 1.44068 1.07635 0.92300 1.25662 1.05513 0.93768 0.91982 1.70821 1.11689 1.43668 1.26137 0.83957 0.75564 0.76958 0.76535 1.20459 1.21264 1.20959 1.69059 1.34320 1.04570 1.11444 1.24053 0.99562 0.93740 0.95939 1.23243 0.99971 0.98871 0.96696 1.22091 0.93704 0.91978 0.94276 1.22827 1.02583 0.93423 1.00437 1.22749 0.83405 0.95161 1.00281 1.87817 1.22257 1.74353 1.46481 1.22485 0.93345 0.94957 0.90240 1.22003 0.97635 0.94966 1.02115 0.95160 0.94282 0.92498 0.94044 0.93513 0.91450 0.86952 0.93023 0.91017 0.92286 0.88937 0.87657 0.94392 0.89568 0.93881 0.89885 0.91438 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.79 37.16 0.36 -2.39 16 2 C -0.10 -2.12 5.60 -26.73 -0.15 -2.27 16 3 C 0.15 3.56 1.63 -68.87 -0.11 3.44 16 4 H 0.05 1.32 4.71 -51.93 -0.24 1.08 16 5 C -0.62 -15.40 4.74 -34.44 -0.16 -15.57 16 6 H 0.06 1.50 6.34 -52.49 -0.33 1.16 16 7 C 0.04 0.98 3.29 -17.82 -0.06 0.92 16 8 N -0.89 -24.19 12.23 55.43 0.68 -23.52 16 9 Si 1.04 22.98 29.18 -169.99 -4.96 18.02 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 N -0.47 -10.06 5.52 -223.89 -1.24 -11.29 16 14 C 0.00 -0.09 6.95 -8.10 -0.06 -0.14 16 15 C -0.15 -2.68 7.34 -26.35 -0.19 -2.87 16 16 C 0.07 1.39 0.71 -136.42 -0.10 1.30 16 17 C -0.15 -3.32 3.06 -26.63 -0.08 -3.40 16 18 C 0.06 1.16 6.76 37.29 0.25 1.41 16 19 O -0.39 -7.42 10.72 -35.23 -0.38 -7.80 16 20 C 0.07 1.08 6.77 37.29 0.25 1.34 16 21 C -0.13 -2.30 5.62 -26.63 -0.15 -2.45 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.10 7.71 -51.93 -0.40 0.70 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.27 7.61 6.66 -40.82 -0.27 7.34 16 28 H 0.11 2.48 4.25 -51.93 -0.22 2.26 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 31 H 0.06 1.00 7.61 -51.93 -0.40 0.60 16 32 H 0.09 2.30 4.90 -51.93 -0.25 2.05 16 33 H 0.11 2.43 3.92 -51.93 -0.20 2.22 16 34 H 0.04 0.65 7.63 -51.93 -0.40 0.26 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 284.33 15.07 4.28 4.28 Total: -1.00 -26.01 284.33 -7.96 -33.97 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.15 Total: 7.02 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -0.19 Total: -20.69 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.56 Total: -34.81 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.38 Total: -7.80 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.96 Total: 18.02 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.01 -7.96 -33.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707535903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.130 kcal (2) G-P(sol) polarization free energy of solvation -26.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds