Wall clock time and date at job start Mon Mar 30 2020 03:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 H 1.09000 * 109.47642 * 302.63372 * 3 2 1 5 5 C 1.50697 * 109.47405 * 62.63906 * 3 2 1 6 6 H 1.07995 * 120.00278 * 85.52909 * 5 3 2 7 7 C 1.37884 * 119.99770 * 265.53070 * 5 3 2 8 8 N 1.31510 * 119.99961 * 358.87688 * 7 5 3 9 9 Si 1.86795 * 119.99949 * 178.87609 * 7 5 3 10 10 H 1.48500 * 109.47212 * 60.00012 * 9 7 5 11 11 H 1.48502 * 109.47148 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47039 * 300.00100 * 9 7 5 13 13 N 1.46907 * 109.47201 * 182.63688 * 3 2 1 14 14 C 1.47016 * 110.99783 * 302.14386 * 13 3 2 15 15 C 1.53097 * 109.25738 * 182.39203 * 14 13 3 16 16 O 1.43015 * 109.25728 * 303.15145 * 15 14 13 17 17 C 1.43020 * 113.73867 * 58.67084 * 16 15 14 18 18 H 1.08993 * 109.50652 * 61.26690 * 17 16 15 19 19 C 1.53004 * 109.50580 * 181.35005 * 17 16 15 20 20 C 1.52998 * 117.50081 * 8.53512 * 19 17 16 21 21 C 1.52995 * 59.99996 * 252.51184 * 20 19 17 22 22 C 1.47013 * 110.99909 * 65.77853 * 13 3 2 23 23 H 1.09000 * 109.47548 * 175.22021 * 1 2 3 24 24 H 1.09005 * 109.47218 * 295.21733 * 1 2 3 25 25 H 1.08997 * 109.47751 * 55.21914 * 1 2 3 26 26 H 1.09006 * 109.46860 * 239.99975 * 2 1 3 27 27 H 1.08999 * 109.47278 * 120.00156 * 2 1 3 28 28 H 0.96999 * 120.00495 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.50490 * 62.45774 * 14 13 3 30 30 H 1.08993 * 109.50973 * 302.32953 * 14 13 3 31 31 H 1.08994 * 109.50435 * 183.22090 * 15 14 13 32 32 H 1.08995 * 109.50784 * 63.08573 * 15 14 13 33 33 H 1.09006 * 115.55008 * 154.24346 * 19 17 16 34 34 H 1.09002 * 117.49809 * 0.02562 * 20 19 17 35 35 H 1.09005 * 117.50130 * 145.01777 * 20 19 17 36 36 H 1.09006 * 117.49609 * 252.51336 * 21 20 19 37 37 H 1.08992 * 117.50308 * 107.49285 * 21 20 19 38 38 H 1.09004 * 109.50723 * 57.67335 * 22 13 3 39 39 H 1.09002 * 109.50863 * 297.54606 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6386 1.9698 -0.8654 5 6 1.5917 2.1338 1.2618 6 1 2.1784 2.0444 2.1641 7 6 0.4325 2.8804 1.2643 8 7 -0.2702 3.0074 0.1600 9 14 -0.1397 3.7115 2.8363 10 1 0.9013 4.6636 3.3001 11 1 -1.4032 4.4470 2.5758 12 1 -0.3724 2.6841 3.8830 13 7 3.5076 1.4430 -0.0637 14 6 4.0841 0.6952 1.0631 15 6 5.6115 0.7714 0.9911 16 8 6.0497 0.2679 -0.2737 17 6 5.5079 0.9736 -1.3934 18 1 5.8231 2.0161 -1.3538 19 6 6.0108 0.3368 -2.6906 20 6 6.7797 -0.9812 -2.5789 21 6 7.5225 0.3108 -2.9250 22 6 3.9795 0.8994 -1.3456 23 1 -0.3634 -1.0241 -0.0856 24 1 -0.3634 0.4379 0.9298 25 1 -0.3634 0.5862 -0.8440 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 -1.0859 3.5323 0.1618 29 1 3.7687 -0.3467 1.0079 30 1 3.7418 1.1304 2.0020 31 1 6.0440 0.1711 1.7914 32 1 5.9297 1.8082 1.1001 33 1 5.3688 0.4731 -3.5610 34 1 6.9269 -1.3949 -1.5812 35 1 6.6435 -1.7125 -3.3757 36 1 7.8750 0.4296 -3.9496 37 1 8.1588 0.7472 -2.1552 38 1 3.5608 1.4837 -2.1650 39 1 3.6623 -0.1393 -1.4393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709863536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:10 Heat of formation + Delta-G solvation = -35.256477 kcal Electronic energy + Delta-G solvation = -18201.065615 eV Core-core repulsion = 15529.741432 eV Total energy + Delta-G solvation = -2671.324183 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85645 -38.32551 -36.96347 -34.62091 -32.82322 -31.85667 -29.23922 -27.31265 -24.98300 -24.68213 -23.27326 -22.72888 -21.18717 -20.46281 -18.39529 -17.52899 -17.02477 -16.47413 -16.15246 -15.84801 -15.49715 -15.31827 -15.20354 -14.85705 -14.12175 -14.05537 -13.23171 -12.95666 -12.80669 -12.70898 -12.56589 -12.51106 -12.24924 -12.21310 -12.09554 -11.66413 -11.55210 -11.42674 -11.18345 -10.97373 -10.83546 -10.49253 -10.29168 -8.85027 -8.07325 -6.14687 1.43653 1.44606 1.51296 2.44656 2.74342 2.96969 3.12524 3.43868 3.82366 4.02111 4.08597 4.20351 4.29277 4.32307 4.42266 4.44017 4.49695 4.60988 4.65296 4.70769 4.78818 4.86757 4.95061 4.99029 5.03807 5.13392 5.15692 5.28176 5.31378 5.41149 5.42220 5.63212 5.72432 5.79512 6.12406 6.26089 6.53727 6.72460 6.95684 7.50563 9.00289 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.036685 B = 0.006475 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.071838 B = 4323.143270 C = 4577.532205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C 0.209 3.791 4 H 0.032 0.968 5 C -0.509 4.509 6 H 0.052 0.948 7 C 0.026 3.974 8 N -0.914 5.914 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.543 5.543 14 C 0.026 3.974 15 C 0.069 3.931 16 O -0.388 6.388 17 C 0.130 3.870 18 H 0.058 0.942 19 C -0.167 4.167 20 C -0.165 4.165 21 C -0.160 4.160 22 C 0.030 3.970 23 H 0.040 0.960 24 H 0.038 0.962 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.041 0.959 28 H 0.260 0.740 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.362 -5.929 -3.268 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.170 4.170 3 C 0.102 3.898 4 H 0.050 0.950 5 C -0.548 4.548 6 H 0.071 0.929 7 C -0.174 4.174 8 N -0.553 5.553 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.267 5.267 14 C -0.102 4.102 15 C -0.007 4.007 16 O -0.307 6.307 17 C 0.072 3.928 18 H 0.076 0.924 19 C -0.185 4.185 20 C -0.201 4.201 21 C -0.197 4.197 22 C -0.098 4.098 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 11.489 -5.495 -3.322 13.162 hybrid contribution -1.360 0.071 0.770 1.565 sum 10.129 -5.424 -2.551 11.770 Atomic orbital electron populations 1.21274 0.95687 0.98052 1.01413 1.22063 0.96934 0.99947 0.98018 1.19344 0.81830 0.91276 0.97301 0.95015 1.21168 1.07051 1.30541 0.96021 0.92941 1.25528 0.96959 0.96380 0.98553 1.70040 1.16180 1.41248 1.27815 0.85790 0.77403 0.78788 0.80682 1.20094 1.21212 1.19752 1.62667 1.10566 1.52235 1.01196 1.22642 0.95620 0.95827 0.96144 1.22731 0.92464 0.99745 0.85779 1.87860 1.70012 1.58564 1.14292 1.21487 0.90718 0.94856 0.85741 0.92408 1.22298 0.96015 1.03400 0.96823 1.22854 1.03343 0.90865 1.03085 1.22973 0.92533 1.01052 1.03119 1.22671 0.96002 0.97717 0.93451 0.94089 0.94261 0.94412 0.94922 0.94032 0.93114 0.95537 0.90589 0.86553 0.92828 0.85993 0.89129 0.87698 0.86923 0.89163 0.91380 0.95320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.85 8.69 71.98 0.63 -4.23 16 2 C -0.13 -5.88 4.68 30.59 0.14 -5.74 16 3 C 0.21 10.40 1.99 44.17 0.09 10.48 16 4 H 0.03 1.81 7.27 -2.39 -0.02 1.80 16 5 C -0.51 -27.22 7.50 25.60 0.19 -27.03 16 6 H 0.05 2.79 6.11 -2.91 -0.02 2.77 16 7 C 0.03 1.38 4.39 84.66 0.37 1.75 16 8 N -0.91 -51.49 11.56 21.45 0.25 -51.24 16 9 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.54 -23.56 4.70 -874.37 -4.11 -27.67 16 14 C 0.03 1.00 4.91 86.31 0.42 1.42 16 15 C 0.07 2.17 7.01 72.01 0.50 2.67 16 16 O -0.39 -12.41 8.83 -148.98 -1.32 -13.73 16 17 C 0.13 4.12 3.16 30.63 0.10 4.21 16 18 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 19 C -0.17 -4.24 5.71 -10.79 -0.06 -4.31 16 20 C -0.16 -3.75 9.87 30.59 0.30 -3.45 16 21 C -0.16 -3.34 10.19 30.59 0.31 -3.03 16 22 C 0.03 1.13 4.59 86.31 0.40 1.53 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.04 1.94 6.72 -2.38 -0.02 1.92 16 25 H 0.04 1.83 7.79 -2.39 -0.02 1.81 16 26 H 0.03 1.39 6.48 -2.38 -0.02 1.37 16 27 H 0.04 1.84 6.58 -2.39 -0.02 1.83 16 28 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.03 1.04 6.47 -2.39 -0.02 1.02 16 30 H 0.08 3.09 6.19 -2.39 -0.01 3.08 16 31 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.12 2.86 8.12 -2.38 -0.02 2.84 16 34 H 0.09 2.33 7.06 -2.39 -0.02 2.32 16 35 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.60 8.13 -2.39 -0.02 2.58 16 39 H 0.03 1.11 6.53 -2.39 -0.02 1.09 16 Total: -1.00 -58.14 297.38 1.25 -56.89 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.01 Total: 16.31 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 3.39 Total: -25.71 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -3.86 Total: -78.91 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -1.32 Total: -13.73 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -58.14 1.25 -56.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709863536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.634 kcal (2) G-P(sol) polarization free energy of solvation -58.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds