Wall clock time and date at job start Mon Mar 30 2020 04:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47012 * 2 1 4 4 C 1.36930 * 119.99759 * 95.93204 * 3 2 1 5 5 H 1.08005 * 119.99986 * 170.23071 * 4 3 2 6 6 C 1.38815 * 120.00286 * 350.22286 * 4 3 2 7 7 N 1.31621 * 119.99742 * 332.63891 * 6 4 3 8 8 Si 1.86797 * 120.00026 * 152.36464 * 6 4 3 9 9 H 1.48494 * 109.47116 * 265.55848 * 8 6 4 10 10 H 1.48500 * 109.47281 * 25.55774 * 8 6 4 11 11 H 1.48505 * 109.47012 * 145.55896 * 8 6 4 12 12 C 1.46499 * 119.99805 * 275.92694 * 3 2 1 13 13 H 1.08998 * 109.55701 * 0.20080 * 12 3 2 14 14 C 1.53161 * 109.55233 * 239.99894 * 12 3 2 15 15 C 1.53036 * 109.40749 * 181.52997 * 14 12 3 16 16 O 1.43044 * 109.44580 * 59.33091 * 15 14 12 17 17 C 1.42584 * 113.84872 * 301.27100 * 16 15 14 18 18 C 1.53428 * 113.56401 * 286.10596 * 17 16 15 19 19 C 1.53846 * 86.97299 * 220.04606 * 18 17 16 20 20 C 1.53400 * 113.62191 * 188.19098 * 17 16 15 21 21 C 1.52814 * 112.94074 * 57.09387 * 17 16 15 22 22 H 1.08999 * 109.47211 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46725 * 299.99614 * 1 2 3 24 24 H 1.08998 * 109.47162 * 59.99721 * 1 2 3 25 25 H 1.09002 * 109.46633 * 239.99840 * 2 1 3 26 26 H 1.08998 * 109.47162 * 120.00279 * 2 1 3 27 27 H 0.96999 * 119.99785 * 179.71976 * 7 6 4 28 28 H 1.08994 * 109.48369 * 301.51266 * 14 12 3 29 29 H 1.09010 * 109.47691 * 61.53984 * 14 12 3 30 30 H 1.08998 * 109.47736 * 179.32208 * 15 14 12 31 31 H 1.09001 * 109.47932 * 299.33244 * 15 14 12 32 32 H 1.08991 * 113.63473 * 334.56922 * 18 17 16 33 33 H 1.09002 * 113.62969 * 105.52884 * 18 17 16 34 34 H 1.08994 * 113.60792 * 270.59890 * 19 18 17 35 35 H 1.09008 * 113.67622 * 139.73363 * 19 18 17 36 36 H 1.09000 * 113.62509 * 254.42165 * 20 17 16 37 37 H 1.09001 * 113.62993 * 25.28046 * 20 17 16 38 38 H 1.08999 * 109.56180 * 186.24284 * 21 17 16 39 39 H 1.08993 * 109.55923 * 65.90152 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3621 1.9858 1.1795 5 1 2.8677 2.9402 1.1699 6 6 2.0606 1.3723 2.3877 7 7 1.0345 0.5522 2.4713 8 14 3.1158 1.7045 3.8928 9 1 4.1564 0.6517 4.0101 10 1 3.7678 3.0319 3.7572 11 1 2.2621 1.6942 5.1079 12 6 2.1390 2.1155 -1.2620 13 1 1.8192 1.4786 -2.0867 14 6 3.5968 2.5348 -1.4737 15 6 3.7123 3.3342 -2.7735 16 8 2.8750 4.4915 -2.6969 17 6 1.4981 4.1933 -2.4771 18 6 0.7881 3.6270 -3.7137 19 6 -0.4191 4.4943 -3.3170 20 6 0.5783 5.4154 -2.5935 21 6 1.2614 3.3716 -1.2106 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.8263 0.1203 3.3145 28 1 3.9226 3.1525 -0.6369 29 1 4.2252 1.6463 -1.5360 30 1 4.7473 3.6435 -2.9192 31 1 3.3974 2.7126 -3.6117 32 1 1.2485 3.9237 -4.6560 33 1 0.5949 2.5559 -3.6543 34 1 -1.1155 3.9921 -2.6457 35 1 -0.9151 4.9679 -4.1643 36 1 0.2164 5.7828 -1.6332 37 1 0.9815 6.2071 -3.2250 38 1 0.2122 3.0817 -1.1544 39 1 1.5251 3.9656 -0.3357 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094375434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:06 Heat of formation + Delta-G solvation = -3.693695 kcal Electronic energy + Delta-G solvation = -18640.069812 eV Core-core repulsion = 15970.114294 eV Total energy + Delta-G solvation = -2669.955518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.10020 -36.56177 -35.59682 -32.48366 -30.58671 -29.03339 -28.13031 -25.56752 -24.44264 -23.36380 -22.82353 -20.87358 -19.75584 -18.10376 -16.51041 -16.05759 -15.59125 -14.92123 -14.77489 -14.05195 -13.71208 -13.50815 -13.14512 -12.66375 -12.39090 -12.09663 -11.84781 -11.73259 -11.41192 -11.11355 -10.85781 -10.81095 -10.68699 -10.54718 -10.44601 -10.33942 -10.08230 -9.91463 -9.88296 -9.34087 -9.18908 -8.90010 -8.30460 -6.83328 -5.74373 -3.02851 3.41805 3.50577 3.51176 4.15489 4.52782 4.82922 4.84952 5.01536 5.15137 5.29115 5.40121 5.55445 5.65350 5.74562 5.86458 5.89147 5.98003 6.02349 6.06787 6.14146 6.19420 6.30192 6.39536 6.53009 6.57395 6.70136 6.75755 6.86011 6.98609 7.04398 7.14795 7.19371 7.67407 7.72481 7.78807 8.14303 8.38931 9.28511 9.91856 10.37557 11.29952 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.027335 B = 0.008180 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.080483 B = 3422.325287 C = 3695.070629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.170 3.830 3 N -0.592 5.592 4 C -0.243 4.243 5 H 0.073 0.927 6 C -0.002 4.002 7 N -0.894 5.894 8 Si 0.889 3.111 9 H -0.290 1.290 10 H -0.281 1.281 11 H -0.295 1.295 12 C 0.182 3.818 13 H 0.050 0.950 14 C -0.163 4.163 15 C 0.065 3.935 16 O -0.374 6.374 17 C 0.097 3.903 18 C -0.164 4.164 19 C -0.137 4.137 20 C -0.125 4.125 21 C -0.127 4.127 22 H 0.018 0.982 23 H 0.096 0.904 24 H 0.009 0.991 25 H 0.002 0.998 26 H 0.080 0.920 27 H 0.250 0.750 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 4.359 -10.687 11.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.045 3.955 3 N -0.312 5.312 4 C -0.372 4.372 5 H 0.091 0.909 6 C -0.199 4.199 7 N -0.539 5.539 8 Si 0.719 3.281 9 H -0.218 1.218 10 H -0.207 1.207 11 H -0.222 1.222 12 C 0.073 3.927 13 H 0.069 0.931 14 C -0.203 4.203 15 C -0.012 4.012 16 O -0.294 6.294 17 C 0.056 3.944 18 C -0.201 4.201 19 C -0.175 4.175 20 C -0.162 4.162 21 C -0.167 4.167 22 H 0.037 0.963 23 H 0.114 0.886 24 H 0.028 0.972 25 H 0.020 0.980 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.079 4.432 -10.540 11.434 hybrid contribution 0.399 -0.171 0.904 1.003 sum 0.320 4.261 -9.636 10.541 Atomic orbital electron populations 1.22396 0.99261 0.98169 1.01350 1.20698 0.92513 0.84524 0.97785 1.44275 1.75640 1.09995 1.01309 1.19155 1.30238 1.04457 0.83325 0.90875 1.24670 0.97569 1.00580 0.97100 1.70163 1.24533 1.34385 1.24851 0.86446 0.80822 0.77768 0.83026 1.21789 1.20660 1.22165 1.20204 0.91891 0.91332 0.89228 0.93145 1.22644 1.00234 1.00062 0.97362 1.22518 0.94025 0.87543 0.97082 1.87846 1.17701 1.31187 1.92621 1.22806 0.80863 0.96012 0.94684 1.23514 0.97516 1.00194 0.98917 1.22681 0.96222 0.98241 1.00335 1.23006 0.95473 0.96581 1.01142 1.22337 1.01158 0.97789 0.95428 0.96313 0.88566 0.97218 0.98000 0.90154 0.93940 0.90885 0.91686 0.89962 0.94042 0.90088 0.91261 0.89832 0.91418 0.90875 0.89814 0.91387 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.75 37.16 0.36 -3.15 16 2 C 0.17 4.06 5.54 -4.04 -0.02 4.04 16 3 N -0.59 -14.27 2.48 -165.38 -0.41 -14.68 16 4 C -0.24 -6.42 8.32 -15.06 -0.13 -6.55 16 5 H 0.07 1.95 6.83 -52.48 -0.36 1.59 16 6 C 0.00 -0.06 4.80 -17.43 -0.08 -0.14 16 7 N -0.89 -24.78 8.69 55.49 0.48 -24.30 16 8 Si 0.89 21.60 29.63 -169.99 -5.04 16.56 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 C 0.18 3.69 2.64 -67.69 -0.18 3.51 16 13 H 0.05 0.99 7.36 -51.93 -0.38 0.61 16 14 C -0.16 -3.02 5.36 -26.63 -0.14 -3.17 16 15 C 0.07 1.03 6.74 37.18 0.25 1.28 16 16 O -0.37 -6.49 10.53 -35.23 -0.37 -6.86 16 17 C 0.10 1.58 1.16 -90.29 -0.10 1.47 16 18 C -0.16 -2.31 6.90 -26.07 -0.18 -2.49 16 19 C -0.14 -1.77 7.73 -25.85 -0.20 -1.97 16 20 C -0.12 -1.76 7.50 -26.08 -0.20 -1.96 16 21 C -0.13 -2.45 4.50 -26.66 -0.12 -2.57 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.10 2.52 6.12 -51.93 -0.32 2.20 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.00 0.04 8.05 -51.93 -0.42 -0.38 16 26 H 0.08 2.13 6.04 -51.93 -0.31 1.82 16 27 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.07 1.49 7.06 -51.93 -0.37 1.13 16 29 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.60 7.84 -51.93 -0.41 0.20 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.00 7.57 -51.93 -0.39 0.61 16 34 H 0.08 1.10 7.61 -51.93 -0.40 0.71 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.35 7.31 -51.93 -0.38 0.97 16 39 H 0.08 1.66 7.31 -51.93 -0.38 1.28 16 LS Contribution 296.08 15.07 4.46 4.46 Total: -1.00 -27.55 296.08 -8.24 -35.79 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.63 Total: 0.70 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.74 Total: -11.68 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.07 Total: -38.97 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.37 Total: -6.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.04 Total: 16.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.55 -8.24 -35.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.099 kcal (2) G-P(sol) polarization free energy of solvation -27.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds