Wall clock time and date at job start Mon Mar 30 2020 04:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47012 * 2 1 4 4 C 1.36930 * 119.99759 * 95.93204 * 3 2 1 5 5 H 1.08005 * 119.99986 * 170.23071 * 4 3 2 6 6 C 1.38815 * 120.00286 * 350.22286 * 4 3 2 7 7 N 1.31621 * 119.99742 * 332.63891 * 6 4 3 8 8 Si 1.86797 * 120.00026 * 152.36464 * 6 4 3 9 9 H 1.48494 * 109.47116 * 265.55848 * 8 6 4 10 10 H 1.48500 * 109.47281 * 25.55774 * 8 6 4 11 11 H 1.48505 * 109.47012 * 145.55896 * 8 6 4 12 12 C 1.46499 * 119.99805 * 275.92694 * 3 2 1 13 13 H 1.08998 * 109.55701 * 0.20080 * 12 3 2 14 14 C 1.53161 * 109.55233 * 239.99894 * 12 3 2 15 15 C 1.53036 * 109.40749 * 181.52997 * 14 12 3 16 16 O 1.43044 * 109.44580 * 59.33091 * 15 14 12 17 17 C 1.42584 * 113.84872 * 301.27100 * 16 15 14 18 18 C 1.53428 * 113.56401 * 286.10596 * 17 16 15 19 19 C 1.53846 * 86.97299 * 220.04606 * 18 17 16 20 20 C 1.53400 * 113.62191 * 188.19098 * 17 16 15 21 21 C 1.52814 * 112.94074 * 57.09387 * 17 16 15 22 22 H 1.08999 * 109.47211 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46725 * 299.99614 * 1 2 3 24 24 H 1.08998 * 109.47162 * 59.99721 * 1 2 3 25 25 H 1.09002 * 109.46633 * 239.99840 * 2 1 3 26 26 H 1.08998 * 109.47162 * 120.00279 * 2 1 3 27 27 H 0.96999 * 119.99785 * 179.71976 * 7 6 4 28 28 H 1.08994 * 109.48369 * 301.51266 * 14 12 3 29 29 H 1.09010 * 109.47691 * 61.53984 * 14 12 3 30 30 H 1.08998 * 109.47736 * 179.32208 * 15 14 12 31 31 H 1.09001 * 109.47932 * 299.33244 * 15 14 12 32 32 H 1.08991 * 113.63473 * 334.56922 * 18 17 16 33 33 H 1.09002 * 113.62969 * 105.52884 * 18 17 16 34 34 H 1.08994 * 113.60792 * 270.59890 * 19 18 17 35 35 H 1.09008 * 113.67622 * 139.73363 * 19 18 17 36 36 H 1.09000 * 113.62509 * 254.42165 * 20 17 16 37 37 H 1.09001 * 113.62993 * 25.28046 * 20 17 16 38 38 H 1.08999 * 109.56180 * 186.24284 * 21 17 16 39 39 H 1.08993 * 109.55923 * 65.90152 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3621 1.9858 1.1795 5 1 2.8677 2.9402 1.1699 6 6 2.0606 1.3723 2.3877 7 7 1.0345 0.5522 2.4713 8 14 3.1158 1.7045 3.8928 9 1 4.1564 0.6517 4.0101 10 1 3.7678 3.0319 3.7572 11 1 2.2621 1.6942 5.1079 12 6 2.1390 2.1155 -1.2620 13 1 1.8192 1.4786 -2.0867 14 6 3.5968 2.5348 -1.4737 15 6 3.7123 3.3342 -2.7735 16 8 2.8750 4.4915 -2.6969 17 6 1.4981 4.1933 -2.4771 18 6 0.7881 3.6270 -3.7137 19 6 -0.4191 4.4943 -3.3170 20 6 0.5783 5.4154 -2.5935 21 6 1.2614 3.3716 -1.2106 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.8263 0.1203 3.3145 28 1 3.9226 3.1525 -0.6369 29 1 4.2252 1.6463 -1.5360 30 1 4.7473 3.6435 -2.9192 31 1 3.3974 2.7126 -3.6117 32 1 1.2485 3.9237 -4.6560 33 1 0.5949 2.5559 -3.6543 34 1 -1.1155 3.9921 -2.6457 35 1 -0.9151 4.9679 -4.1643 36 1 0.2164 5.7828 -1.6332 37 1 0.9815 6.2071 -3.2250 38 1 0.2122 3.0817 -1.1544 39 1 1.5251 3.9656 -0.3357 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094375434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:06 Heat of formation + Delta-G solvation = -18.250858 kcal Electronic energy + Delta-G solvation = -18640.701058 eV Core-core repulsion = 15970.114294 eV Total energy + Delta-G solvation = -2670.586764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40807 -38.19109 -37.00118 -34.24095 -32.49609 -30.53743 -29.87720 -26.69987 -26.29911 -24.64488 -24.41681 -22.54867 -21.43325 -19.42386 -18.26248 -17.42224 -17.21979 -16.47870 -16.22336 -15.54321 -15.46640 -15.23190 -14.62535 -14.17533 -13.91743 -13.59680 -13.56455 -13.20122 -13.04805 -12.75191 -12.56241 -12.44725 -12.24974 -12.13189 -11.99945 -11.84801 -11.65775 -11.60000 -11.37448 -11.23232 -10.72080 -10.31972 -10.23993 -8.78563 -7.80198 -5.08746 1.45064 1.49451 1.55534 2.54154 2.91916 3.26773 3.47458 3.67200 3.75885 3.91918 3.96361 4.12711 4.30525 4.39869 4.47654 4.60606 4.64898 4.74387 4.77824 4.84892 4.87445 4.98738 5.02598 5.06328 5.10050 5.11344 5.20304 5.23452 5.36771 5.47566 5.49868 5.55298 5.64613 5.75992 6.17442 6.37543 6.43136 7.24660 7.96359 8.36691 9.21962 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.027335 B = 0.008180 C = 0.007576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.080483 B = 3422.325287 C = 3695.070629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.171 3.829 3 N -0.605 5.605 4 C -0.241 4.241 5 H 0.064 0.936 6 C -0.049 4.049 7 N -0.912 5.912 8 Si 0.943 3.057 9 H -0.292 1.292 10 H -0.278 1.278 11 H -0.299 1.299 12 C 0.176 3.824 13 H 0.062 0.938 14 C -0.156 4.156 15 C 0.069 3.931 16 O -0.386 6.386 17 C 0.085 3.915 18 C -0.154 4.154 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.116 4.116 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.021 0.979 25 H 0.024 0.976 26 H 0.050 0.950 27 H 0.245 0.755 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 4.877 -12.816 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 N -0.325 5.325 4 C -0.371 4.371 5 H 0.082 0.918 6 C -0.244 4.244 7 N -0.560 5.560 8 Si 0.773 3.227 9 H -0.220 1.220 10 H -0.204 1.204 11 H -0.227 1.227 12 C 0.069 3.931 13 H 0.080 0.920 14 C -0.196 4.196 15 C -0.007 4.007 16 O -0.305 6.305 17 C 0.045 3.955 18 C -0.192 4.192 19 C -0.165 4.165 20 C -0.161 4.161 21 C -0.155 4.155 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.140 4.966 -12.691 13.629 hybrid contribution 0.347 -0.324 1.537 1.608 sum 0.487 4.643 -11.154 12.091 Atomic orbital electron populations 1.22176 0.98611 0.98811 1.00189 1.20620 0.93015 0.84515 0.97313 1.44450 1.75780 1.10364 1.01952 1.19221 1.29391 1.04015 0.84441 0.91849 1.25232 0.98566 1.01417 0.99172 1.70303 1.25352 1.35442 1.24856 0.85597 0.79242 0.77475 0.80354 1.21951 1.20356 1.22656 1.20424 0.93280 0.91574 0.87819 0.91977 1.22539 0.98675 1.00154 0.98243 1.22595 0.95273 0.87168 0.95712 1.87846 1.18187 1.31954 1.92507 1.22876 0.81086 0.97292 0.94257 1.23481 0.97397 1.00083 0.98221 1.22651 0.95663 0.97417 1.00819 1.23060 0.95253 0.96435 1.01372 1.22119 1.00081 0.97310 0.96033 0.94752 0.91862 0.96019 0.95783 0.93137 0.94561 0.93583 0.91408 0.87681 0.92023 0.88296 0.91671 0.90600 0.88694 0.91688 0.88307 0.92435 0.93984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.32 9.75 71.98 0.70 -5.62 16 2 C 0.17 8.13 5.54 86.38 0.48 8.61 16 3 N -0.60 -29.31 2.48 -677.14 -1.68 -30.99 16 4 C -0.24 -12.98 8.32 84.04 0.70 -12.28 16 5 H 0.06 3.49 6.83 -2.91 -0.02 3.47 16 6 C -0.05 -2.69 4.80 84.86 0.41 -2.28 16 7 N -0.91 -51.74 8.69 21.65 0.19 -51.55 16 8 Si 0.94 45.34 29.63 68.60 2.03 47.37 16 9 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 12 C 0.18 7.03 2.64 45.15 0.12 7.15 16 13 H 0.06 2.33 7.36 -2.39 -0.02 2.31 16 14 C -0.16 -5.65 5.36 30.66 0.16 -5.49 16 15 C 0.07 2.00 6.74 71.99 0.49 2.49 16 16 O -0.39 -12.51 10.53 -148.98 -1.57 -14.08 16 17 C 0.08 2.63 1.16 -10.58 -0.01 2.61 16 18 C -0.15 -3.86 6.90 31.02 0.21 -3.65 16 19 C -0.13 -2.93 7.73 31.16 0.24 -2.69 16 20 C -0.12 -3.25 7.50 31.01 0.23 -3.02 16 21 C -0.12 -4.45 4.50 30.64 0.14 -4.32 16 22 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 3.35 6.12 -2.39 -0.01 3.33 16 24 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.02 1.03 8.05 -2.39 -0.02 1.01 16 26 H 0.05 2.71 6.04 -2.39 -0.01 2.70 16 27 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.05 1.89 7.06 -2.39 -0.02 1.88 16 29 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.06 1.56 7.84 -2.39 -0.02 1.55 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.69 7.57 -2.39 -0.02 1.67 16 34 H 0.08 1.86 7.61 -2.39 -0.02 1.84 16 35 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 37 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.29 7.31 -2.39 -0.02 2.27 16 39 H 0.04 1.87 7.31 -2.39 -0.02 1.86 16 Total: -1.00 -59.26 296.08 3.84 -55.42 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.00 Total: 12.32 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 3.87 Total: -18.49 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.49 Total: -82.54 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -1.57 Total: -14.08 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -59.26 3.84 -55.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094375434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.164 kcal (2) G-P(sol) polarization free energy of solvation -59.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds