Wall clock time and date at job start Mon Mar 30 2020 03:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47451 * 2 1 4 4 C 1.50699 * 109.47393 * 120.00017 * 2 1 3 5 5 H 1.07997 * 120.00089 * 119.99909 * 4 2 1 6 6 C 1.37884 * 120.00067 * 300.00579 * 4 2 1 7 7 N 1.31505 * 120.00126 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99768 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47153 * 90.00300 * 8 6 4 10 10 H 1.48500 * 109.47164 * 210.00281 * 8 6 4 11 11 H 1.48500 * 109.47172 * 330.00283 * 8 6 4 12 12 N 1.46902 * 109.47351 * 240.00350 * 2 1 3 13 13 C 1.46906 * 110.99573 * 306.04551 * 12 2 1 14 14 C 1.46898 * 111.00283 * 69.99692 * 12 2 1 15 15 C 1.53000 * 109.47048 * 170.00220 * 14 12 2 16 16 C 1.52996 * 109.46990 * 180.02562 * 15 14 12 17 17 H 1.08999 * 109.97639 * 53.72538 * 16 15 14 18 18 C 1.54277 * 109.98846 * 175.00105 * 16 15 14 19 19 C 1.54975 * 103.75339 * 142.46951 * 18 16 15 20 20 C 1.54889 * 102.33446 * 322.91433 * 19 18 16 21 21 C 1.51452 * 109.98660 * 292.41813 * 16 15 14 22 22 O 1.20765 * 126.34193 * 60.97982 * 21 16 15 23 23 H 1.09002 * 109.46526 * 59.99912 * 1 2 3 24 24 H 1.08991 * 109.46937 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47190 * 300.00149 * 1 2 3 26 26 H 0.97004 * 120.00138 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.46544 * 183.95424 * 13 12 2 28 28 H 1.09001 * 109.47272 * 303.95030 * 13 12 2 29 29 H 1.09000 * 109.47033 * 63.95479 * 13 12 2 30 30 H 1.08992 * 109.47062 * 290.00772 * 14 12 2 31 31 H 1.09003 * 109.46753 * 50.00460 * 14 12 2 32 32 H 1.09001 * 109.47085 * 300.00035 * 15 14 12 33 33 H 1.08993 * 109.47201 * 60.00475 * 15 14 12 34 34 H 1.09000 * 110.57047 * 261.04414 * 18 16 15 35 35 H 1.09003 * 110.56258 * 23.90024 * 18 16 15 36 36 H 1.08995 * 110.83578 * 81.13174 * 19 18 16 37 37 H 1.09005 * 110.83336 * 204.70775 * 19 18 16 38 38 H 1.09006 * 110.43849 * 156.36452 * 20 19 18 39 39 H 1.08998 * 110.44884 * 278.88446 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 2.1381 -0.8590 3.5565 8 14 0.6257 1.2797 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9952 3.9071 11 1 0.8489 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0973 -2.4091 15 6 2.4886 -0.5256 -3.5973 16 6 2.2112 0.2973 -4.8570 17 1 2.4553 1.3445 -4.6789 18 6 3.0456 -0.2455 -6.0357 19 6 2.0962 -0.1088 -7.2529 20 6 0.7175 -0.4551 -6.6377 21 6 0.7552 0.1644 -5.2519 22 8 -0.1992 0.4902 -4.5875 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9034 -0.5279 4.4376 27 1 1.8665 -2.5520 -2.1649 28 1 1.6467 -2.5988 -0.3992 29 1 0.3556 -1.9520 -1.4400 30 1 0.6815 0.1054 -2.6087 31 1 2.1026 1.1189 -2.2603 32 1 3.5601 -0.5336 -3.3976 33 1 2.1390 -1.5472 -3.7460 34 1 3.9423 0.3572 -6.1797 35 1 3.3079 -1.2904 -5.8700 36 1 2.1038 0.9109 -7.6380 37 1 2.3621 -0.8212 -8.0339 38 1 -0.0849 -0.0149 -7.2298 39 1 0.5920 -1.5356 -6.5685 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251649244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:34 Heat of formation + Delta-G solvation = -61.683203 kcal Electronic energy + Delta-G solvation = -17718.064745 eV Core-core repulsion = 15045.594614 eV Total energy + Delta-G solvation = -2672.470132 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03929 -39.15460 -37.28576 -35.01084 -33.37504 -31.16707 -28.64032 -27.60837 -27.26165 -26.04871 -22.97952 -21.90075 -20.81756 -19.90065 -18.70969 -17.62935 -17.23437 -16.76423 -16.07854 -15.92822 -15.36662 -15.13599 -15.01881 -14.44221 -14.29446 -14.08348 -13.77626 -13.52926 -13.36706 -13.20637 -12.71180 -12.68406 -12.47851 -12.31256 -12.00688 -11.98525 -11.78771 -11.61119 -11.46259 -11.36868 -11.05081 -10.77556 -10.24503 -8.96092 -8.29758 -6.31535 0.96765 1.26555 1.31898 1.41865 2.29377 3.03779 3.17273 3.24449 3.60357 3.82769 4.03991 4.18663 4.25346 4.30480 4.36734 4.46706 4.48946 4.58264 4.61028 4.63512 4.74085 4.76196 4.84103 4.92041 4.94269 5.00758 5.12907 5.17670 5.21821 5.27041 5.33993 5.37620 5.46672 5.60622 6.03332 6.39190 6.56831 6.67853 6.74110 7.32865 8.87000 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.044703 B = 0.005479 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.202950 B = 5109.416893 C = 5353.197044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.183 3.817 3 H 0.029 0.971 4 C -0.500 4.500 5 H 0.043 0.957 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.293 1.293 11 H -0.255 1.255 12 N -0.537 5.537 13 C 0.037 3.963 14 C 0.043 3.957 15 C -0.091 4.091 16 C -0.151 4.151 17 H 0.101 0.899 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.180 4.180 21 C 0.360 3.640 22 O -0.488 6.488 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.037 0.963 26 H 0.266 0.734 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.016 0.984 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 1.727 -24.039 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.074 3.926 3 H 0.047 0.953 4 C -0.539 4.539 5 H 0.061 0.939 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.773 3.227 9 H -0.197 1.197 10 H -0.221 1.221 11 H -0.180 1.180 12 N -0.260 5.260 13 C -0.111 4.111 14 C -0.085 4.085 15 C -0.128 4.128 16 C -0.170 4.170 17 H 0.119 0.881 18 C -0.146 4.146 19 C -0.149 4.149 20 C -0.218 4.218 21 C 0.238 3.762 22 O -0.363 6.363 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.161 1.841 -23.467 23.539 hybrid contribution -1.435 0.653 0.964 1.848 sum -1.597 2.494 -22.502 22.696 Atomic orbital electron populations 1.22670 1.00445 1.01116 0.99389 1.19577 0.89565 0.94355 0.89073 0.95310 1.21148 1.30379 1.12575 0.89764 0.93886 1.25689 0.97362 0.99701 0.95436 1.70014 1.47746 1.42432 0.98483 0.85910 0.79093 0.80455 0.77243 1.19722 1.22074 1.17965 1.62115 1.58755 1.03177 1.01909 1.22249 0.96208 0.90976 1.01640 1.22317 0.98525 0.97159 0.90540 1.21419 1.01751 0.98629 0.91034 1.22441 0.94760 1.02486 0.97352 0.88102 1.22377 0.97934 1.02577 0.91751 1.22451 0.91591 1.03325 0.97504 1.22958 1.01332 1.03398 0.94071 1.25705 0.90346 0.71573 0.88592 1.90409 1.44419 1.42176 1.59320 0.93362 0.92710 0.94488 0.92492 0.90275 0.93172 0.96526 0.95115 0.92341 0.89645 0.91382 0.89113 0.89792 0.90187 0.88121 0.88668 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -8.19 7.92 71.98 0.57 -7.62 16 2 C 0.18 9.08 1.90 44.17 0.08 9.16 16 3 H 0.03 1.48 6.99 -2.39 -0.02 1.47 16 4 C -0.50 -29.42 8.49 25.60 0.22 -29.20 16 5 H 0.04 2.80 7.37 -2.91 -0.02 2.78 16 6 C 0.02 0.92 5.45 84.66 0.46 1.38 16 7 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 8 Si 0.95 46.76 24.37 68.60 1.67 48.43 16 9 H -0.27 -12.89 6.87 99.48 0.68 -12.21 16 10 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 11 H -0.26 -11.98 6.53 99.48 0.65 -11.33 16 12 N -0.54 -22.98 4.70 -901.46 -4.24 -27.22 16 13 C 0.04 1.48 8.45 127.69 1.08 2.56 16 14 C 0.04 1.50 4.33 86.30 0.37 1.87 16 15 C -0.09 -2.31 4.46 30.59 0.14 -2.18 16 16 C -0.15 -2.95 2.87 -10.87 -0.03 -2.98 16 17 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 18 C -0.11 -1.27 6.40 31.70 0.20 -1.07 16 19 C -0.11 -1.00 6.95 31.92 0.22 -0.78 16 20 C -0.18 -2.47 6.72 30.86 0.21 -2.27 16 21 C 0.36 8.25 7.04 29.71 0.21 8.46 16 22 O -0.49 -15.90 16.04 -1.47 -0.02 -15.92 16 23 H 0.05 2.03 6.91 -2.39 -0.02 2.01 16 24 H 0.05 2.50 6.41 -2.39 -0.02 2.48 16 25 H 0.04 1.73 3.27 -2.39 -0.01 1.73 16 26 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 27 H 0.08 2.55 6.47 -2.39 -0.02 2.54 16 28 H 0.05 2.25 6.76 -2.39 -0.02 2.23 16 29 H 0.02 0.64 6.46 -2.39 -0.02 0.62 16 30 H 0.03 1.17 5.05 -2.39 -0.01 1.16 16 31 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.07 1.67 6.55 -2.39 -0.02 1.65 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.91 7.85 -2.39 -0.02 0.89 16 36 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -71.41 293.89 2.38 -69.03 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.94 Total: 8.16 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 3.73 Total: -22.66 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -3.94 Total: -87.03 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.02 Total: -15.92 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.43 kcal Total: -71.41 2.38 -69.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251649244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.342 kcal (2) G-P(sol) polarization free energy of solvation -71.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds