Wall clock time and date at job start Mon Mar 30 2020 04:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46885 * 2 1 4 4 C 1.50694 * 109.47159 * 240.00031 * 2 1 3 5 5 H 1.08002 * 120.00442 * 245.53808 * 4 2 1 6 6 C 1.37882 * 120.00033 * 65.53655 * 4 2 1 7 7 N 1.31510 * 120.00029 * 196.02718 * 6 4 2 8 8 Si 1.86790 * 119.99814 * 16.02843 * 6 4 2 9 9 H 1.48508 * 109.47128 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47399 * 299.99702 * 8 6 4 11 11 H 1.48498 * 109.47389 * 59.99902 * 8 6 4 12 12 N 1.46900 * 109.47296 * 119.99893 * 2 1 3 13 13 C 1.46902 * 111.00000 * 274.36065 * 12 2 1 14 14 H 1.09001 * 113.49062 * 354.07176 * 13 12 2 15 15 C 1.50657 * 114.50036 * 220.04526 * 13 12 2 16 16 H 1.08997 * 114.94470 * 173.71952 * 15 13 12 17 17 C 1.52691 * 126.47477 * 17.91678 * 15 13 12 18 18 C 1.56695 * 99.76420 * 233.35523 * 17 15 13 19 19 O 1.45495 * 105.67644 * 23.57568 * 18 17 15 20 20 C 1.38976 * 106.82740 * 12.13186 * 19 18 17 21 21 H 1.08995 * 109.73755 * 76.24338 * 20 19 18 22 22 C 1.49116 * 135.46842 * 229.09477 * 20 19 18 23 23 C 1.53001 * 114.55787 * 25.91881 * 22 20 19 24 24 C 1.52995 * 114.63464 * 252.02987 * 22 20 19 25 25 H 1.09004 * 109.47338 * 307.21285 * 1 2 3 26 26 H 1.08997 * 109.47158 * 67.21426 * 1 2 3 27 27 H 1.08998 * 109.47223 * 187.21615 * 1 2 3 28 28 H 0.97004 * 120.00482 * 354.89765 * 7 6 4 29 29 H 1.00893 * 111.00184 * 150.40135 * 12 2 1 30 30 H 1.08996 * 111.30142 * 351.33444 * 17 15 13 31 31 H 1.08999 * 111.29475 * 115.94297 * 17 15 13 32 32 H 1.08998 * 110.40493 * 264.42561 * 18 17 15 33 33 H 1.09000 * 110.10208 * 142.56273 * 18 17 15 34 34 H 1.08996 * 109.47625 * 139.61100 * 23 22 20 35 35 H 1.09001 * 109.47111 * 259.61657 * 23 22 20 36 36 H 1.09010 * 109.47197 * 19.61034 * 23 22 20 37 37 H 1.08998 * 109.47427 * 325.50077 * 24 22 20 38 38 H 1.09000 * 109.46747 * 85.49966 * 24 22 20 39 39 H 1.08997 * 109.47288 * 205.49385 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5775 -1.6377 -1.1339 6 6 1.7959 -0.1765 -2.4795 7 7 1.9430 -0.9229 -3.5522 8 14 1.2667 1.6069 -2.6480 9 1 1.0777 1.9336 -4.0843 10 1 -0.0115 1.8148 -1.9213 11 1 2.3126 2.4901 -2.0724 12 7 2.0197 -0.6925 1.1994 13 6 2.0969 0.2263 2.3431 14 1 1.8818 1.2627 2.0831 15 6 3.3124 0.0398 3.2133 16 1 3.4332 0.7845 4.0000 17 6 4.5969 -0.6932 2.8335 18 6 4.6974 -1.6935 4.0355 19 8 3.3412 -1.8360 4.5427 20 6 2.4966 -1.2629 3.5996 21 1 2.3851 -1.9349 2.7487 22 6 1.3734 -0.2827 3.6346 23 6 1.4161 0.6914 4.8137 24 6 -0.0101 -0.8892 3.3919 25 1 -0.3634 0.6215 0.8184 26 1 -0.3633 0.3980 -0.9474 27 1 -0.3633 -1.0195 0.1291 28 1 2.2885 -1.8257 -3.4713 29 1 2.9124 -1.1293 1.0256 30 1 4.4884 -1.2157 1.8832 31 1 5.4493 -0.0141 2.8142 32 1 5.3491 -1.2914 4.8111 33 1 5.0734 -2.6568 3.6907 34 1 1.1280 1.6862 4.4738 35 1 0.7242 0.3569 5.5866 36 1 2.4268 0.7252 5.2207 37 1 0.0727 -1.7094 2.6789 38 1 -0.4123 -1.2648 4.3328 39 1 -0.6765 -0.1253 2.9912 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252889526.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:25 Heat of formation + Delta-G solvation = 46.929190 kcal Electronic energy + Delta-G solvation = -18525.612960 eV Core-core repulsion = 15857.852616 eV Total energy + Delta-G solvation = -2667.760345 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.96026 -36.90148 -34.91094 -32.29218 -31.54756 -29.36722 -27.91571 -27.01835 -24.84412 -23.82559 -22.74027 -20.18964 -19.69604 -18.26400 -17.56476 -16.46213 -15.56830 -15.24770 -14.65818 -14.20778 -13.98364 -13.59673 -13.30281 -13.12083 -12.68342 -12.30618 -12.03786 -11.89279 -11.66483 -11.44076 -11.33032 -11.22250 -11.09879 -10.52735 -10.48694 -10.39099 -10.35049 -9.90205 -9.68110 -9.32909 -8.90349 -8.77543 -8.28140 -7.58037 -6.50479 -4.13110 3.31698 3.35177 3.38046 3.56313 4.32369 4.43840 4.60198 4.80267 4.94634 5.08187 5.22941 5.26243 5.36319 5.46308 5.48954 5.66187 5.72532 5.79646 5.91214 5.99534 6.04029 6.06954 6.14939 6.24832 6.31016 6.42399 6.48143 6.52714 6.67782 6.72976 6.85973 6.92624 7.33378 7.44734 7.66470 8.02042 8.32998 8.37925 8.88673 9.56185 10.89424 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.030269 B = 0.007695 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.805598 B = 3637.922576 C = 4030.374257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.189 3.811 3 H -0.003 1.003 4 C -0.606 4.606 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.905 5.905 8 Si 1.046 2.954 9 H -0.285 1.285 10 H -0.272 1.272 11 H -0.286 1.286 12 N -0.655 5.655 13 C 0.100 3.900 14 H 0.072 0.928 15 C -0.218 4.218 16 H 0.117 0.883 17 C -0.141 4.141 18 C 0.056 3.944 19 O -0.373 6.373 20 C 0.040 3.960 21 H 0.106 0.894 22 C -0.054 4.054 23 C -0.129 4.129 24 C -0.125 4.125 25 H 0.020 0.980 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.268 0.732 29 H 0.341 0.659 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 3.105 14.576 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.080 3.920 3 H 0.014 0.986 4 C -0.644 4.644 5 H 0.077 0.923 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.875 3.125 9 H -0.211 1.211 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.288 5.288 13 C -0.012 4.012 14 H 0.090 0.910 15 C -0.237 4.237 16 H 0.135 0.865 17 C -0.179 4.179 18 C -0.019 4.019 19 O -0.292 6.292 20 C -0.018 4.018 21 H 0.123 0.877 22 C -0.056 4.056 23 C -0.186 4.186 24 C -0.182 4.182 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.164 0.836 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.569 3.867 13.778 14.322 hybrid contribution 1.460 -0.637 0.739 1.756 sum 2.029 3.230 14.517 15.010 Atomic orbital electron populations 1.22168 0.98121 1.00325 0.98954 1.19522 0.92285 0.92374 0.87795 0.98589 1.22077 1.40792 1.10220 0.91290 0.92302 1.25710 0.94765 1.04830 0.92020 1.70851 1.41148 1.10546 1.31319 0.84029 0.77156 0.75265 0.76051 1.21131 1.19824 1.21208 1.60517 1.32678 1.30693 1.04948 1.22354 0.92684 0.95650 0.90467 0.90967 1.25079 0.93701 1.01490 1.03460 0.86534 1.22645 0.98278 0.98320 0.98665 1.24149 0.83999 0.98549 0.95250 1.87772 1.15694 1.79996 1.45747 1.24214 0.95177 0.91301 0.91074 0.87708 1.22066 0.93738 0.94111 0.95665 1.21737 1.02029 0.98392 0.96469 1.21600 0.94551 1.01295 1.00793 0.96119 0.92957 0.93122 0.92205 0.83615 0.90066 0.90764 0.90793 0.91677 0.92285 0.92351 0.91803 0.90959 0.93784 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.07 37.16 0.34 -2.68 16 2 C 0.19 4.35 2.12 -68.87 -0.15 4.20 16 3 H 0.00 -0.08 6.21 -51.93 -0.32 -0.40 16 4 C -0.61 -16.50 8.84 -34.44 -0.30 -16.81 16 5 H 0.06 1.73 7.91 -52.49 -0.42 1.31 16 6 C 0.03 0.92 5.31 -17.82 -0.09 0.82 16 7 N -0.90 -27.37 13.69 55.43 0.76 -26.61 16 8 Si 1.05 24.81 26.25 -169.99 -4.46 20.35 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.27 -5.97 5.69 56.52 0.32 -5.65 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 N -0.66 -12.95 4.44 -115.90 -0.51 -13.47 16 13 C 0.10 1.68 4.07 -81.30 -0.33 1.35 16 14 H 0.07 1.25 7.46 -51.93 -0.39 0.86 16 15 C -0.22 -3.22 4.28 -99.24 -0.43 -3.65 16 16 H 0.12 1.58 5.55 -51.93 -0.29 1.29 16 17 C -0.14 -1.94 6.64 -24.90 -0.17 -2.10 16 18 C 0.06 0.73 7.89 39.15 0.31 1.04 16 19 O -0.37 -5.98 11.33 -29.84 -0.34 -6.32 16 20 C 0.04 0.64 4.01 -39.93 -0.16 0.48 16 21 H 0.11 1.89 5.81 -51.93 -0.30 1.59 16 22 C -0.05 -0.81 1.59 -164.84 -0.26 -1.07 16 23 C -0.13 -1.62 8.77 37.16 0.33 -1.29 16 24 C -0.13 -1.89 9.10 37.16 0.34 -1.55 16 25 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 26 H 0.05 1.20 4.74 -51.93 -0.25 0.95 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 29 H 0.34 6.87 5.46 -39.30 -0.21 6.65 16 30 H 0.08 1.22 6.28 -51.93 -0.33 0.89 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.68 7.98 -51.93 -0.41 0.27 16 36 H 0.06 0.78 6.01 -51.92 -0.31 0.47 16 37 H 0.07 1.22 7.72 -51.93 -0.40 0.82 16 38 H 0.04 0.59 8.07 -51.93 -0.42 0.17 16 39 H 0.05 0.82 7.84 -51.93 -0.41 0.42 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -28.93 291.59 -6.95 -35.88 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.21 Total: 7.02 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -0.58 Total: -21.25 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.24 Total: -40.08 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.34 Total: -6.32 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -4.46 Total: 20.35 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.93 -6.95 -35.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252889526.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.807 kcal (2) G-P(sol) polarization free energy of solvation -28.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds