Wall clock time and date at job start Mon Mar 30 2020 04:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00099 * 2 1 4 4 C 1.53003 * 109.47284 * 293.95617 * 3 2 1 5 5 C 1.52992 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.54964 * 110.92569 * 71.53590 * 5 4 3 7 7 C 1.54264 * 104.16242 * 156.29714 * 6 5 4 8 8 C 1.53870 * 106.64069 * 336.44527 * 7 6 5 9 9 C 1.54270 * 106.59805 * 359.97438 * 8 7 6 10 10 C 1.46899 * 110.99953 * 123.95080 * 2 1 3 11 11 C 1.50703 * 109.46555 * 66.04900 * 10 2 1 12 12 O 1.21433 * 120.00434 * 359.97438 * 11 10 2 13 13 C 1.41034 * 119.99698 * 179.97438 * 11 10 2 14 14 H 1.07999 * 119.99741 * 353.73781 * 13 11 10 15 15 C 1.40452 * 120.00034 * 173.74113 * 13 11 10 16 16 N 1.30520 * 119.99799 * 6.25515 * 15 13 11 17 17 Si 1.86799 * 119.99911 * 186.25933 * 15 13 11 18 18 H 1.48501 * 109.47205 * 94.98472 * 17 15 13 19 19 H 1.48509 * 109.47035 * 214.98193 * 17 15 13 20 20 H 1.48503 * 109.47265 * 334.97865 * 17 15 13 21 21 H 1.09007 * 109.47360 * 59.99631 * 1 2 3 22 22 H 1.08992 * 109.47551 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47332 * 300.00024 * 1 2 3 24 24 H 1.08990 * 109.47433 * 173.95394 * 3 2 1 25 25 H 1.09005 * 109.47272 * 53.94909 * 3 2 1 26 26 H 1.09007 * 109.47233 * 59.99580 * 4 3 2 27 27 H 1.09004 * 109.46908 * 299.99780 * 4 3 2 28 28 H 1.08999 * 110.67150 * 308.23460 * 5 4 3 29 29 H 1.09004 * 110.47382 * 37.64571 * 6 5 4 30 30 H 1.08994 * 110.53183 * 274.98055 * 6 5 4 31 31 H 1.09004 * 110.03153 * 217.14303 * 7 6 5 32 32 H 1.09000 * 110.03545 * 95.75879 * 7 6 5 33 33 H 1.09000 * 110.03487 * 119.26007 * 8 7 6 34 34 H 1.08995 * 110.03949 * 240.64490 * 8 7 6 35 35 H 1.09001 * 110.48989 * 142.28836 * 9 8 7 36 36 H 1.09000 * 110.48601 * 264.79714 * 9 8 7 37 37 H 1.09003 * 109.46739 * 186.04507 * 10 2 1 38 38 H 1.08999 * 109.47338 * 306.04596 * 10 2 1 39 39 H 0.97010 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1792 3.4860 -1.3180 6 6 3.7226 3.4870 -1.4563 7 6 4.0483 4.8767 -2.0415 8 6 2.7764 5.3618 -2.7588 9 6 1.7213 4.2497 -2.5854 10 6 1.9954 -0.7659 1.1376 11 6 1.6369 -2.2204 0.9728 12 8 1.0039 -2.5835 0.0022 13 6 2.0365 -3.1598 1.9459 14 1 2.6841 -2.8565 2.7553 15 6 1.5925 -4.4896 1.8623 16 7 0.9120 -4.8861 0.8215 17 14 1.9758 -5.6907 3.2406 18 1 0.8317 -5.7407 4.1860 19 1 2.2058 -7.0422 2.6698 20 1 3.1948 -5.2440 3.9617 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 3.0796 1.3445 0.1082 25 1 1.5611 1.9274 0.8309 26 1 0.5471 2.0845 -1.4265 27 1 2.0658 1.5016 -2.1492 28 1 1.8725 4.0156 -0.4160 29 1 4.0448 2.7006 -2.1388 30 1 4.1939 3.3637 -0.4812 31 1 4.8711 4.7990 -2.7522 32 1 4.3114 5.5671 -1.2401 33 1 2.4216 6.2871 -2.3050 34 1 2.9821 5.5204 -3.8174 35 1 0.7324 4.6823 -2.4337 36 1 1.7184 3.5882 -3.4517 37 1 3.0797 -0.6610 1.1756 38 1 1.5611 -0.3872 2.0628 39 1 0.6049 -5.8046 0.7640 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259315832.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:26 Heat of formation + Delta-G solvation = -80.359203 kcal Electronic energy + Delta-G solvation = -17093.011734 eV Core-core repulsion = 14419.731750 eV Total energy + Delta-G solvation = -2673.279984 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.83780 -39.03307 -37.19396 -34.68086 -32.87046 -30.19136 -29.55986 -28.09230 -27.87483 -25.02791 -22.31792 -21.23095 -20.86663 -20.71903 -18.34847 -17.17547 -16.78829 -16.55527 -16.28567 -15.65377 -15.41497 -15.09205 -14.49398 -14.30486 -14.22340 -13.90455 -13.69591 -13.19273 -12.94955 -12.72376 -12.45477 -12.31192 -12.21022 -12.09898 -12.00942 -11.99987 -11.88335 -11.53336 -11.39907 -11.21418 -11.16697 -10.92127 -9.50728 -9.02738 -8.21677 -7.03678 1.36110 1.38597 1.55331 2.22015 2.24994 3.10612 3.39937 3.68695 3.80395 3.89624 4.17009 4.27355 4.31304 4.49834 4.58761 4.62880 4.63589 4.67380 4.69997 4.76616 4.81262 4.86688 4.90729 4.92237 5.07691 5.11827 5.16490 5.21823 5.23081 5.28606 5.32505 5.39729 5.55293 5.60731 6.00269 6.13063 6.38649 6.76768 6.89784 8.34943 8.57397 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.058801 B = 0.004050 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.064915 B = 6912.192115 C = 7146.968796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.545 5.545 3 C 0.058 3.942 4 C -0.098 4.098 5 C -0.087 4.087 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.122 4.122 9 C -0.120 4.120 10 C 0.027 3.973 11 C 0.344 3.656 12 O -0.569 6.569 13 C -0.571 4.571 14 H 0.083 0.917 15 C 0.028 3.972 16 N -0.791 5.791 17 Si 0.993 3.007 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.249 1.249 21 H 0.074 0.926 22 H 0.050 0.950 23 H 0.019 0.981 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 16.629 -1.423 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.269 5.269 3 C -0.070 4.070 4 C -0.136 4.136 5 C -0.106 4.106 6 C -0.161 4.161 7 C -0.161 4.161 8 C -0.160 4.160 9 C -0.158 4.158 10 C -0.101 4.101 11 C 0.240 3.760 12 O -0.460 6.460 13 C -0.603 4.603 14 H 0.101 0.899 15 C -0.190 4.190 16 N -0.421 5.421 17 Si 0.812 3.188 18 H -0.186 1.186 19 H -0.193 1.193 20 H -0.172 1.172 21 H 0.093 0.907 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.541 16.162 -2.448 16.726 hybrid contribution -0.203 -0.374 1.259 1.329 sum 3.337 15.789 -1.189 16.181 Atomic orbital electron populations 1.22312 0.87686 1.01652 0.99635 1.61703 1.08337 1.13519 1.43342 1.22226 0.99904 0.87273 0.97582 1.21504 1.00635 0.94946 0.96524 1.22094 0.95498 0.94153 0.98810 1.22466 0.95271 0.97542 1.00793 1.22135 0.97938 0.96147 0.99889 1.22122 0.94865 0.98244 1.00757 1.22408 0.98984 0.97234 0.97164 1.22367 1.00121 0.96330 0.91311 1.20171 0.80818 0.88782 0.86256 1.90326 1.40994 1.81993 1.32652 1.21296 1.30896 0.95848 1.12268 0.89890 1.27182 0.92333 1.01006 0.98512 1.70100 1.25697 1.17991 1.28265 0.85080 0.80038 0.76370 0.77312 1.18566 1.19350 1.17211 0.90710 0.93114 0.96273 0.90984 0.95019 0.92261 0.92613 0.90419 0.92427 0.91759 0.91627 0.91319 0.91192 0.91449 0.91278 0.92119 0.89723 0.94095 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 8.96 127.69 1.14 2.61 16 2 N -0.55 -23.20 4.50 -927.04 -4.17 -27.37 16 3 C 0.06 1.85 4.85 86.30 0.42 2.27 16 4 C -0.10 -2.70 4.64 30.59 0.14 -2.56 16 5 C -0.09 -1.85 2.86 -9.48 -0.03 -1.88 16 6 C -0.12 -2.52 5.71 31.69 0.18 -2.34 16 7 C -0.12 -2.05 6.80 31.32 0.21 -1.84 16 8 C -0.12 -1.93 6.80 31.32 0.21 -1.72 16 9 C -0.12 -2.25 6.27 31.67 0.20 -2.05 16 10 C 0.03 1.27 5.32 85.56 0.46 1.72 16 11 C 0.34 20.00 6.59 26.37 0.17 20.17 16 12 O -0.57 -37.41 12.88 -3.50 -0.05 -37.45 16 13 C -0.57 -32.47 9.22 23.50 0.22 -32.25 16 14 H 0.08 4.28 7.86 -2.91 -0.02 4.26 16 15 C 0.03 1.56 5.50 85.43 0.47 2.03 16 16 N -0.79 -47.38 11.75 21.91 0.26 -47.12 16 17 Si 0.99 40.10 29.57 68.60 2.03 42.13 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 20 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 21 H 0.07 2.72 6.47 -2.38 -0.02 2.71 16 22 H 0.05 2.58 5.82 -2.39 -0.01 2.57 16 23 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 2.23 7.45 -2.39 -0.02 2.21 16 25 H 0.03 0.96 8.12 -2.38 -0.02 0.94 16 26 H 0.06 1.64 6.55 -2.38 -0.02 1.62 16 27 H 0.06 1.70 8.00 -2.38 -0.02 1.68 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.30 7.95 -2.38 -0.02 1.28 16 30 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.21 8.05 -2.39 -0.02 1.19 16 37 H 0.08 3.63 7.93 -2.39 -0.02 3.61 16 38 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 39 H 0.28 15.01 8.29 -92.70 -0.77 14.24 16 Total: -1.00 -69.54 309.26 2.86 -66.68 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 1.00 Total: 18.96 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 3.80 Total: -15.83 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -3.91 Total: -74.49 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.05 Total: -37.45 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -69.54 2.86 -66.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259315832.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.680 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds