Wall clock time and date at job start Mon Mar 30 2020 03:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.54156 * 2 1 4 4 C 1.53101 * 109.50284 * 239.89447 * 2 1 3 5 5 O 1.43018 * 109.25206 * 183.21884 * 4 2 1 6 6 C 1.43010 * 113.74131 * 58.67068 * 5 4 2 7 7 C 1.53100 * 109.26047 * 301.33045 * 6 5 4 8 8 N 1.47010 * 109.25930 * 56.84399 * 7 6 5 9 9 C 1.46903 * 111.00149 * 177.61299 * 8 7 6 10 10 H 1.09001 * 110.01492 * 176.78371 * 9 8 7 11 11 C 1.53868 * 110.03218 * 55.38559 * 9 8 7 12 12 C 1.54264 * 106.59935 * 240.67018 * 11 9 8 13 13 C 1.54892 * 104.31558 * 336.32297 * 12 11 9 14 14 H 1.09000 * 110.75570 * 279.69882 * 13 12 11 15 15 C 1.50690 * 110.75949 * 156.32268 * 13 12 11 16 16 H 1.08004 * 120.00084 * 241.45727 * 15 13 12 17 17 C 1.37876 * 119.99935 * 61.45992 * 15 13 12 18 18 N 1.31516 * 120.00042 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00198 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47182 * 59.99664 * 19 17 15 21 21 H 1.48501 * 109.47477 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46992 * 299.99983 * 19 17 15 23 23 C 1.54269 * 110.06905 * 298.19447 * 9 8 7 24 24 H 1.08999 * 109.47383 * 299.89104 * 1 2 3 25 25 H 1.08999 * 109.47009 * 59.88869 * 1 2 3 26 26 H 1.08998 * 109.47259 * 179.88305 * 1 2 3 27 27 H 1.08996 * 109.50711 * 303.14579 * 4 2 1 28 28 H 1.08991 * 109.50917 * 63.24205 * 4 2 1 29 29 H 1.09003 * 109.50793 * 61.26013 * 6 5 4 30 30 H 1.08997 * 109.50887 * 181.34978 * 6 5 4 31 31 H 1.09002 * 109.49974 * 296.91061 * 7 6 5 32 32 H 1.08992 * 109.50807 * 176.78489 * 7 6 5 33 33 H 1.08994 * 110.03215 * 121.38131 * 11 9 8 34 34 H 1.09004 * 110.07406 * 359.97174 * 11 9 8 35 35 H 1.09001 * 110.49213 * 95.06698 * 12 11 9 36 36 H 1.09004 * 110.48666 * 217.58316 * 12 11 9 37 37 H 0.96997 * 119.99788 * 179.97438 * 18 17 15 38 38 H 1.08995 * 110.48679 * 261.59608 * 23 9 8 39 39 H 1.08999 * 110.48761 * 24.23971 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0411 -0.7239 -1.2485 5 8 3.4693 -0.7867 -1.2057 6 6 3.9818 -1.4579 -0.0515 7 6 3.4902 -0.7415 1.2091 8 7 2.0208 -0.6952 1.1987 9 6 1.5053 -0.0645 2.4212 10 1 0.4192 0.0129 2.3716 11 6 2.1261 1.3325 2.5956 12 6 2.8967 1.3087 3.9318 13 6 2.2183 0.1784 4.7450 14 1 1.2944 0.5326 5.2023 15 6 3.1583 -0.3663 5.7893 16 1 3.4577 -1.4035 5.7580 17 6 3.6360 0.4594 6.7848 18 7 3.2717 1.7226 6.8226 19 14 4.8006 -0.2159 8.0798 20 1 6.0279 -0.7312 7.4214 21 1 5.1659 0.8657 9.0295 22 1 4.1344 -1.3190 8.8176 23 6 1.9203 -0.8886 3.6576 24 1 -0.3634 0.5121 0.8909 25 1 -0.3633 0.5156 -0.8890 26 1 -0.3634 -1.0276 -0.0021 27 1 1.6331 -1.7342 -1.2761 28 1 1.7267 -0.1799 -2.1390 29 1 3.6301 -2.4896 -0.0443 30 1 5.0714 -1.4449 -0.0768 31 1 3.8862 0.2738 1.2285 32 1 3.8311 -1.2827 2.0916 33 1 1.3413 2.0881 2.6305 34 1 2.8104 1.5431 1.7737 35 1 3.9483 1.0779 3.7617 36 1 2.7952 2.2635 4.4478 37 1 3.6075 2.3033 7.5232 38 1 1.1044 -1.5382 3.9744 39 1 2.8142 -1.4743 3.4432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260947032.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:42 Heat of formation + Delta-G solvation = -66.732833 kcal Electronic energy + Delta-G solvation = -18325.219039 eV Core-core repulsion = 15652.529939 eV Total energy + Delta-G solvation = -2672.689100 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22171 -38.76160 -36.08939 -34.25131 -33.16960 -30.10543 -29.63658 -28.10095 -26.93387 -25.18580 -23.67421 -21.97933 -20.99939 -19.72849 -18.53132 -17.49095 -17.12791 -16.61531 -16.46026 -16.12233 -15.66335 -15.58130 -14.96585 -14.45392 -14.03165 -13.77274 -13.30969 -13.09500 -12.97747 -12.80610 -12.75301 -12.47897 -12.40256 -12.23025 -12.05214 -11.92401 -11.46998 -11.37193 -11.19634 -10.92820 -10.81158 -10.50889 -10.45861 -9.21663 -8.11829 -6.21996 1.40793 1.41855 1.49461 2.42677 2.80938 2.99579 3.18628 3.79826 3.91567 3.97530 4.09614 4.18357 4.20835 4.29992 4.35979 4.49253 4.64872 4.72640 4.77111 4.80654 4.87775 4.90191 4.95966 5.00335 5.03575 5.10560 5.14951 5.23646 5.35756 5.40989 5.46197 5.64136 5.90109 5.98585 6.09455 6.16916 6.25892 6.39222 6.88424 7.45623 8.96397 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.038673 B = 0.006320 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.837966 B = 4429.361332 C = 4770.290609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.037 3.963 3 H 0.035 0.965 4 C 0.070 3.930 5 O -0.404 6.404 6 C 0.070 3.930 7 C 0.012 3.988 8 N -0.522 5.522 9 C 0.088 3.912 10 H 0.091 0.909 11 C -0.145 4.145 12 C -0.085 4.085 13 C 0.042 3.958 14 H -0.002 1.002 15 C -0.531 4.531 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.952 3.048 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.270 1.270 23 C -0.099 4.099 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.026 0.974 36 H 0.034 0.966 37 H 0.259 0.741 38 H 0.052 0.948 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -4.350 -14.937 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 H 0.054 0.946 4 C -0.007 4.007 5 O -0.322 6.322 6 C -0.007 4.007 7 C -0.116 4.116 8 N -0.246 5.246 9 C -0.020 4.020 10 H 0.109 0.891 11 C -0.184 4.184 12 C -0.124 4.124 13 C 0.023 3.977 14 H 0.016 0.984 15 C -0.569 4.569 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.777 3.223 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.195 1.195 23 C -0.136 4.136 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.120 -4.606 -15.018 16.015 hybrid contribution 0.835 0.903 1.525 1.959 sum -2.285 -3.703 -13.493 14.177 Atomic orbital electron populations 1.21784 0.92205 1.03077 1.02641 1.22406 0.97523 0.96046 0.91131 0.94650 1.22847 0.80026 1.00779 0.97017 1.87925 1.21902 1.78841 1.43578 1.22717 0.99601 0.95456 0.82945 1.22828 0.88791 0.99949 1.00039 1.62564 1.08051 1.52280 1.01723 1.22349 0.99186 0.91271 0.89211 0.89068 1.22768 0.99444 0.98474 0.97758 1.21985 0.96983 0.99634 0.93756 1.19592 0.93945 0.92088 0.92056 0.98371 1.21461 1.27971 0.96133 1.11308 0.92865 1.25764 0.98044 0.95148 0.99721 1.70088 1.45747 1.05795 1.34366 0.85708 0.79541 0.77985 0.79020 1.19608 1.21121 1.19526 1.22453 0.99909 0.97515 0.93771 0.92831 0.89970 0.91321 0.91672 0.86646 0.91642 0.87267 0.95152 0.90030 0.92565 0.92567 0.95533 0.94684 0.93183 0.92919 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.92 71.98 0.64 -2.21 16 2 C 0.04 0.94 2.32 44.93 0.10 1.04 16 3 H 0.04 1.00 6.93 -2.39 -0.02 0.98 16 4 C 0.07 1.52 6.29 72.02 0.45 1.98 16 5 O -0.40 -10.66 10.83 -148.98 -1.61 -12.27 16 6 C 0.07 1.75 7.01 72.02 0.50 2.25 16 7 C 0.01 0.37 4.99 86.32 0.43 0.80 16 8 N -0.52 -15.69 4.54 -840.73 -3.82 -19.51 16 9 C 0.09 3.06 2.70 45.64 0.12 3.18 16 10 H 0.09 2.97 5.94 -2.39 -0.01 2.95 16 11 C -0.15 -5.54 5.39 31.32 0.17 -5.37 16 12 C -0.09 -4.10 5.56 31.67 0.18 -3.92 16 13 C 0.04 2.13 2.84 -10.13 -0.03 2.10 16 14 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 15 C -0.53 -29.56 8.55 25.60 0.22 -29.34 16 16 H 0.05 2.90 7.79 -2.91 -0.02 2.88 16 17 C 0.01 0.66 5.33 84.65 0.45 1.12 16 18 N -0.92 -54.36 12.02 21.45 0.26 -54.10 16 19 Si 0.95 44.07 29.54 68.60 2.03 46.09 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 C -0.10 -4.06 5.75 31.79 0.18 -3.87 16 24 H 0.05 1.21 6.23 -2.39 -0.01 1.20 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 28 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.03 1.03 6.15 -2.39 -0.01 1.02 16 32 H 0.08 2.74 5.98 -2.39 -0.01 2.72 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.06 5.10 -2.39 -0.01 2.05 16 35 H 0.03 1.32 8.04 -2.39 -0.02 1.30 16 36 H 0.03 1.86 7.37 -2.39 -0.02 1.85 16 37 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.49 5.71 -2.39 -0.01 2.48 16 Total: -1.00 -61.57 290.71 1.29 -60.28 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.02 Total: 11.76 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.43 Total: -32.25 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -3.56 Total: -73.61 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -1.61 Total: -12.27 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -61.57 1.29 -60.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947032.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.458 kcal (2) G-P(sol) polarization free energy of solvation -61.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds