Wall clock time and date at job start Mon Mar 30 2020 03:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50700 * 119.99964 * 2 1 4 4 C 1.50696 * 119.99916 * 179.97438 * 2 1 3 5 5 H 1.09004 * 110.33249 * 352.75494 * 4 2 1 6 6 O 1.44422 * 110.37420 * 230.37955 * 4 2 1 7 7 C 1.44420 * 105.27489 * 200.65734 * 6 4 2 8 8 C 1.54480 * 104.80448 * 40.51176 * 7 6 4 9 9 C 1.54479 * 110.37103 * 114.99530 * 4 2 1 10 10 H 1.09006 * 110.51001 * 24.03372 * 9 4 2 11 11 C 1.52997 * 110.51668 * 261.45770 * 9 4 2 12 12 N 1.46899 * 109.47254 * 174.99875 * 11 9 4 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.46835 * 325.00273 * 13 12 11 15 15 C 1.52997 * 109.46874 * 85.00270 * 13 12 11 16 16 C 1.50699 * 109.46851 * 204.99994 * 13 12 11 17 17 H 1.07998 * 120.00472 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99705 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00261 * 180.02562 * 18 16 13 20 20 Si 1.86804 * 120.00001 * 0.02562 * 18 16 13 21 21 H 1.48495 * 109.47348 * 89.99570 * 20 18 16 22 22 H 1.48496 * 109.47246 * 210.00199 * 20 18 16 23 23 H 1.48509 * 109.46943 * 329.99773 * 20 18 16 24 24 H 1.07995 * 120.00229 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99989 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46802 * 270.00140 * 3 2 1 27 27 H 1.08999 * 109.47303 * 29.99984 * 3 2 1 28 28 H 1.08992 * 109.47220 * 150.00350 * 3 2 1 29 29 H 1.08997 * 110.37305 * 159.34231 * 7 6 4 30 30 H 1.09003 * 110.37801 * 281.67959 * 7 6 4 31 31 H 1.08994 * 110.51361 * 217.37416 * 8 7 6 32 32 H 1.09003 * 110.50879 * 94.66782 * 8 7 6 33 33 H 1.09002 * 109.47153 * 54.99872 * 11 9 4 34 34 H 1.09001 * 109.46832 * 295.00062 * 11 9 4 35 35 H 1.00902 * 111.00582 * 303.95797 * 12 11 9 36 36 H 1.09007 * 109.47004 * 300.00081 * 15 13 12 37 37 H 1.09007 * 109.47280 * 59.99720 * 15 13 12 38 38 H 1.08997 * 109.47489 * 179.97438 * 15 13 12 39 39 H 0.96997 * 119.99862 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3748 -2.1400 0.1299 6 8 3.0626 -1.3084 1.0435 7 6 4.0140 -2.3233 0.6556 8 6 4.1751 -2.1507 -0.8710 9 6 2.8623 -1.4654 -1.3119 10 1 3.0679 -0.4911 -1.7553 11 6 2.1000 -2.3519 -2.2987 12 7 2.8202 -2.3918 -3.5784 13 6 2.1160 -3.2363 -4.5527 14 1 1.6497 -4.0753 -4.0362 15 6 1.0394 -2.4103 -5.2594 16 6 3.0990 -3.7560 -5.5699 17 1 4.1424 -3.4864 -5.4995 18 6 2.6661 -4.5758 -6.5905 19 7 3.5239 -5.0298 -7.4781 20 14 0.8612 -5.0416 -6.7127 21 1 0.1474 -4.0420 -7.5471 22 1 0.7375 -6.3844 -7.3345 23 1 0.2639 -5.0687 -5.3533 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 2.2452 1.6197 -1.0277 27 1 1.4745 2.0648 0.5138 28 1 3.0159 1.1748 0.5137 29 1 4.9675 -2.1616 1.1584 30 1 3.6260 -3.3154 0.8864 31 1 4.2810 -3.1210 -1.3561 32 1 5.0318 -1.5151 -1.0952 33 1 1.1013 -1.9446 -2.4564 34 1 2.0212 -3.3611 -1.8945 35 1 2.9630 -1.4616 -3.9423 36 1 0.3285 -2.0343 -4.5236 37 1 1.5058 -1.5712 -5.7758 38 1 0.5172 -3.0367 -5.9826 39 1 3.2193 -5.6063 -8.1962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308892047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:29 Heat of formation + Delta-G solvation = -50.859535 kcal Electronic energy + Delta-G solvation = -17612.601311 eV Core-core repulsion = 14940.600529 eV Total energy + Delta-G solvation = -2672.000782 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84374 -37.99267 -36.03932 -34.91250 -33.41598 -30.84210 -29.39704 -28.18092 -27.14372 -25.40500 -23.69491 -22.09326 -21.44519 -19.71368 -18.77539 -17.15421 -17.04924 -16.67349 -16.34104 -16.05955 -15.45027 -15.00070 -14.64796 -14.56937 -14.33147 -14.06986 -13.98812 -13.56205 -13.35283 -13.09320 -12.78538 -12.60139 -12.34436 -12.23648 -12.01328 -11.85079 -11.76675 -11.50079 -11.42605 -11.14522 -10.76897 -10.74382 -9.99629 -9.02899 -8.26892 -6.29124 1.20267 1.29098 1.34706 1.44692 2.31887 3.04694 3.07320 3.32525 3.65249 3.86989 4.00680 4.09143 4.19131 4.26880 4.38181 4.43633 4.52038 4.56123 4.64160 4.68626 4.75301 4.78699 4.83726 4.89245 4.97135 5.03476 5.04389 5.14495 5.23835 5.29234 5.37587 5.64388 5.66948 5.80828 5.96049 6.02738 6.68342 6.73552 6.78923 7.35995 8.90540 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.032546 B = 0.005753 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.125185 B = 4865.973253 C = 5312.590983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.134 4.134 3 C -0.113 4.113 4 C 0.115 3.885 5 H 0.072 0.928 6 O -0.382 6.382 7 C 0.043 3.957 8 C -0.140 4.140 9 C -0.100 4.100 10 H 0.083 0.917 11 C 0.072 3.928 12 N -0.679 5.679 13 C 0.187 3.813 14 H 0.027 0.973 15 C -0.177 4.177 16 C -0.502 4.502 17 H 0.036 0.964 18 C 0.008 3.992 19 N -0.951 5.951 20 Si 0.951 3.049 21 H -0.268 1.268 22 H -0.299 1.299 23 H -0.251 1.251 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.060 0.940 35 H 0.336 0.664 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 9.965 16.334 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.134 4.134 3 C -0.170 4.170 4 C 0.057 3.943 5 H 0.090 0.910 6 O -0.302 6.302 7 C -0.033 4.033 8 C -0.178 4.178 9 C -0.119 4.119 10 H 0.101 0.899 11 C -0.057 4.057 12 N -0.309 5.309 13 C 0.078 3.922 14 H 0.045 0.955 15 C -0.236 4.236 16 C -0.541 4.541 17 H 0.054 0.946 18 C -0.188 4.188 19 N -0.592 5.592 20 Si 0.779 3.221 21 H -0.194 1.194 22 H -0.227 1.227 23 H -0.175 1.175 24 H 0.119 0.881 25 H 0.137 0.863 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.154 0.846 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.702 9.493 16.595 19.951 hybrid contribution -1.105 -0.194 -1.119 1.585 sum -6.808 9.299 15.477 19.296 Atomic orbital electron populations 1.23908 0.94681 1.03128 1.00009 1.21654 0.95458 0.95011 1.01260 1.20764 1.00411 0.93611 1.02219 1.22004 0.90291 0.95740 0.86259 0.90989 1.89097 1.37591 1.58405 1.45065 1.23558 0.93698 0.91703 0.94349 1.22862 0.97497 1.01852 0.95571 1.22421 0.95167 0.99493 0.94825 0.89898 1.21938 0.94755 0.98936 0.90113 1.60417 1.50388 1.16423 1.03654 1.19399 0.90817 0.91958 0.90053 0.95542 1.22718 0.99679 1.00724 1.00432 1.21277 0.95252 1.28314 1.09239 0.94551 1.25806 1.02018 0.95846 0.95166 1.70045 1.36731 1.36094 1.16368 0.85824 0.80552 0.76397 0.79341 1.19373 1.22717 1.17475 0.88074 0.86296 0.91284 0.90648 0.92020 0.87525 0.91808 0.90842 0.90689 0.95158 0.92117 0.84640 0.92258 0.92579 0.94646 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.39 13.91 67.77 0.94 -2.44 16 2 C -0.13 -2.89 5.13 -16.49 -0.08 -2.97 16 3 C -0.11 -2.17 9.45 71.24 0.67 -1.49 16 4 C 0.12 2.79 3.05 30.35 0.09 2.88 16 5 H 0.07 1.73 7.58 -2.38 -0.02 1.71 16 6 O -0.38 -9.83 10.77 -148.98 -1.60 -11.43 16 7 C 0.04 0.97 7.63 72.49 0.55 1.52 16 8 C -0.14 -3.62 6.62 31.61 0.21 -3.41 16 9 C -0.10 -2.62 2.78 -9.78 -0.03 -2.64 16 10 H 0.08 2.16 7.40 -2.38 -0.02 2.15 16 11 C 0.07 2.22 4.57 86.30 0.39 2.62 16 12 N -0.68 -26.14 6.12 -495.45 -3.03 -29.17 16 13 C 0.19 8.51 2.17 44.17 0.10 8.61 16 14 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 15 C -0.18 -7.10 8.64 71.98 0.62 -6.47 16 16 C -0.50 -28.63 9.42 25.60 0.24 -28.39 16 17 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 18 C 0.01 0.48 5.45 84.65 0.46 0.94 16 19 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 20 Si 0.95 44.76 24.37 68.60 1.67 46.43 16 21 H -0.27 -11.95 6.87 99.48 0.68 -11.27 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.25 -10.90 6.53 99.48 0.65 -10.25 16 24 H 0.10 1.81 7.87 -2.91 -0.02 1.79 16 25 H 0.12 1.80 8.04 -2.91 -0.02 1.77 16 26 H 0.07 1.26 8.11 -2.39 -0.02 1.24 16 27 H 0.07 1.19 8.06 -2.39 -0.02 1.17 16 28 H 0.06 1.28 7.61 -2.39 -0.02 1.26 16 29 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 2.18 7.72 -2.39 -0.02 2.16 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.03 0.89 7.44 -2.39 -0.02 0.87 16 34 H 0.06 1.95 8.03 -2.39 -0.02 1.93 16 35 H 0.34 12.26 8.47 -89.69 -0.76 11.50 16 36 H 0.06 1.98 7.45 -2.38 -0.02 1.97 16 37 H 0.06 2.21 8.13 -2.38 -0.02 2.19 16 38 H 0.03 1.49 3.27 -2.39 -0.01 1.48 16 39 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -64.85 307.37 1.68 -63.17 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.17 Total: 21.77 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 4.17 Total: -31.26 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -2.73 Total: -88.68 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.60 Total: -11.43 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.67 Total: 46.43 kcal Total: -64.85 1.68 -63.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308892047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.314 kcal (2) G-P(sol) polarization free energy of solvation -64.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds