Wall clock time and date at job start Mon Mar 30 2020 03:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50705 * 120.00324 * 2 1 4 4 C 1.50707 * 120.00086 * 179.97438 * 2 1 3 5 5 H 1.08996 * 109.87134 * 138.88309 * 4 2 1 6 6 O 1.43747 * 109.87398 * 17.87490 * 4 2 1 7 7 C 1.44383 * 106.97506 * 214.06387 * 6 4 2 8 8 C 1.54993 * 103.62975 * 39.98003 * 7 6 4 9 9 C 1.54102 * 109.87821 * 260.04832 * 4 2 1 10 10 H 1.09002 * 110.48632 * 240.12570 * 9 4 2 11 11 C 1.53000 * 110.49040 * 2.64139 * 9 4 2 12 12 N 1.46897 * 109.47045 * 180.45783 * 11 9 4 13 13 C 1.46906 * 110.99815 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.46997 * 324.99878 * 13 12 11 15 15 C 1.53001 * 109.46954 * 84.99904 * 13 12 11 16 16 C 1.50696 * 109.47063 * 205.00254 * 13 12 11 17 17 H 1.07999 * 119.99910 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99861 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00070 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99835 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47221 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46937 * 119.99893 * 20 18 16 23 23 H 1.48497 * 109.47073 * 239.99844 * 20 18 16 24 24 H 1.08001 * 119.99792 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00493 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46701 * 245.38176 * 3 2 1 27 27 H 1.08998 * 109.47089 * 5.38254 * 3 2 1 28 28 H 1.09003 * 109.47133 * 125.38150 * 3 2 1 29 29 H 1.08996 * 110.61980 * 158.56856 * 7 6 4 30 30 H 1.09006 * 110.61582 * 281.40378 * 7 6 4 31 31 H 1.09004 * 110.90363 * 81.25582 * 8 7 6 32 32 H 1.08998 * 110.90428 * 204.85331 * 8 7 6 33 33 H 1.08999 * 109.47174 * 300.46001 * 11 9 4 34 34 H 1.09000 * 109.47121 * 60.45754 * 11 9 4 35 35 H 1.00893 * 110.99888 * 56.04907 * 12 11 9 36 36 H 1.09001 * 109.47079 * 179.97438 * 15 13 12 37 37 H 1.08999 * 109.47325 * 300.00050 * 15 13 12 38 38 H 1.09004 * 109.46921 * 59.99876 * 15 13 12 39 39 H 0.97001 * 119.99713 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.9175 -1.2402 -0.6735 6 8 1.1936 -2.3719 -0.4139 7 6 1.5913 -3.5496 0.3205 8 6 1.8994 -3.0084 1.7398 9 6 2.5423 -1.6331 1.4281 10 1 3.6294 -1.7075 1.4582 11 6 2.0521 -0.5713 2.4146 12 7 2.5297 -0.8994 3.7645 13 6 2.0776 0.1012 4.7405 14 1 2.0620 1.0850 4.2716 15 6 0.6702 -0.2563 5.2227 16 6 3.0215 0.1195 5.9151 17 1 3.8720 -0.5459 5.9347 18 6 2.7989 0.9850 6.9650 19 7 1.7630 1.7948 6.9412 20 14 3.9686 1.0071 8.4213 21 1 5.0461 0.0083 8.2060 22 1 4.5674 2.3595 8.5546 23 1 3.2225 0.6718 9.6606 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 2.6159 1.4056 -0.9343 27 1 1.3592 2.1313 0.0964 28 1 2.7605 1.3222 0.8379 29 1 0.7777 -4.2740 0.3541 30 1 2.4823 -3.9952 -0.1221 31 1 0.9828 -2.8861 2.3168 32 1 2.6013 -3.6597 2.2605 33 1 2.4381 0.4045 2.1198 34 1 0.9624 -0.5472 2.4107 35 1 3.5343 -0.9911 3.7802 36 1 0.3349 0.4858 5.9472 37 1 -0.0125 -0.2695 4.3731 38 1 0.6858 -1.2402 5.6916 39 1 1.6066 2.4040 7.6798 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308892049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:31 Heat of formation + Delta-G solvation = -32.342993 kcal Electronic energy + Delta-G solvation = -17863.691806 eV Core-core repulsion = 15192.493961 eV Total energy + Delta-G solvation = -2671.197845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87524 -36.01579 -34.89948 -33.10070 -31.41786 -28.99454 -27.81653 -27.06756 -25.30013 -23.96966 -22.43262 -20.46948 -19.74460 -18.17837 -16.46258 -16.36654 -15.71193 -15.21486 -14.75840 -14.52654 -13.79654 -13.72475 -13.54292 -12.88731 -12.58993 -12.41352 -12.13934 -11.75777 -11.41969 -11.23691 -11.16076 -11.03039 -10.93534 -10.80824 -10.61141 -10.24052 -10.14736 -10.08206 -9.87609 -9.61657 -8.79927 -8.73348 -8.46964 -7.19932 -6.02611 -4.09011 2.43137 3.27848 3.35790 3.39710 3.95768 4.39313 4.68941 4.86580 4.97839 5.17281 5.24432 5.28833 5.36571 5.54182 5.61752 5.68064 5.75657 5.77603 5.84492 5.97674 6.06179 6.13427 6.23246 6.39303 6.49425 6.60421 6.77020 6.89561 6.92507 7.16397 7.20223 7.26402 7.53046 7.78714 7.91617 8.28990 8.41323 8.70001 9.02721 9.57101 11.03722 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.033346 B = 0.005822 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.486472 B = 4808.404470 C = 5133.866553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.128 4.128 3 C -0.121 4.121 4 C 0.117 3.883 5 H 0.069 0.931 6 O -0.373 6.373 7 C 0.042 3.958 8 C -0.132 4.132 9 C -0.109 4.109 10 H 0.077 0.923 11 C 0.066 3.934 12 N -0.689 5.689 13 C 0.213 3.787 14 H -0.001 1.001 15 C -0.123 4.123 16 C -0.517 4.517 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.327 0.673 36 H 0.079 0.921 37 H 0.003 0.997 38 H 0.030 0.970 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -5.433 -12.959 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.129 4.129 3 C -0.177 4.177 4 C 0.059 3.941 5 H 0.087 0.913 6 O -0.292 6.292 7 C -0.035 4.035 8 C -0.170 4.170 9 C -0.128 4.128 10 H 0.096 0.904 11 C -0.064 4.064 12 N -0.320 5.320 13 C 0.106 3.894 14 H 0.017 0.983 15 C -0.182 4.182 16 C -0.556 4.556 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.723 3.277 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.112 0.888 25 H 0.123 0.877 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.022 0.978 38 H 0.049 0.951 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.398 -5.696 -12.860 14.071 hybrid contribution 1.298 0.798 0.799 1.720 sum 0.900 -4.898 -12.061 13.048 Atomic orbital electron populations 1.23659 0.95345 1.01876 1.00417 1.21530 0.95788 0.94327 1.01219 1.21013 1.00597 0.93986 1.02107 1.21577 0.91507 0.86079 0.94927 0.91293 1.88839 1.56912 1.18835 1.64655 1.23603 0.99847 0.88593 0.91432 1.23049 1.02302 0.95480 0.96175 1.22554 1.00296 0.96460 0.93530 0.90434 1.22166 1.00447 0.94527 0.89218 1.60721 1.15995 1.51470 1.03768 1.19065 0.93444 0.87659 0.89272 0.98336 1.21700 0.96750 1.00811 0.98901 1.21317 1.10211 1.20387 1.03680 0.92234 1.24925 0.95470 0.95330 0.98323 1.69911 1.27800 1.23077 1.32085 0.86485 0.80931 0.77704 0.82530 1.19787 1.21119 1.20972 0.88757 0.87730 0.92008 0.91683 0.90699 0.89332 0.92659 0.89893 0.90238 0.95170 0.91322 0.85659 0.90210 0.97773 0.95091 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 13.06 29.02 0.38 -2.11 16 2 C -0.13 -1.80 3.58 -101.06 -0.36 -2.16 16 3 C -0.12 -1.52 9.73 36.01 0.35 -1.17 16 4 C 0.12 1.63 3.73 -27.30 -0.10 1.52 16 5 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 6 O -0.37 -5.38 9.79 -35.23 -0.35 -5.73 16 7 C 0.04 0.50 7.71 38.21 0.29 0.80 16 8 C -0.13 -1.83 6.53 -24.63 -0.16 -1.99 16 9 C -0.11 -1.60 3.23 -89.00 -0.29 -1.88 16 10 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 11 C 0.07 1.18 3.62 -3.83 -0.01 1.17 16 12 N -0.69 -14.51 6.09 -107.95 -0.66 -15.17 16 13 C 0.21 5.42 2.60 -68.86 -0.18 5.24 16 14 H 0.00 -0.03 7.80 -51.93 -0.40 -0.43 16 15 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 16 C -0.52 -14.20 8.59 -34.44 -0.30 -14.50 16 17 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 19 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.09 1.21 7.84 -52.49 -0.41 0.80 16 25 H 0.10 1.53 7.05 -52.49 -0.37 1.16 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.79 7.79 -51.93 -0.40 0.38 16 28 H 0.07 1.02 5.85 -51.93 -0.30 0.72 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.30 7.86 -51.93 -0.41 0.89 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.55 4.80 -51.93 -0.25 0.30 16 34 H 0.07 1.34 6.44 -51.93 -0.33 1.01 16 35 H 0.33 6.71 8.22 -39.30 -0.32 6.39 16 36 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 37 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -28.81 305.03 -7.33 -36.14 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.41 Total: 5.12 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -0.13 Total: -16.27 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: -0.03 Total: -40.10 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.35 Total: -5.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.81 -7.33 -36.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308892049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.798 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds