Wall clock time and date at job start Mon Mar 30 2020 03:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50705 * 120.00324 * 2 1 4 4 C 1.50707 * 120.00086 * 179.97438 * 2 1 3 5 5 H 1.08996 * 109.87134 * 138.88309 * 4 2 1 6 6 O 1.43747 * 109.87398 * 17.87490 * 4 2 1 7 7 C 1.44383 * 106.97506 * 214.06387 * 6 4 2 8 8 C 1.54993 * 103.62975 * 39.98003 * 7 6 4 9 9 C 1.54102 * 109.87821 * 260.04832 * 4 2 1 10 10 H 1.09002 * 110.48632 * 240.12570 * 9 4 2 11 11 C 1.53000 * 110.49040 * 2.64139 * 9 4 2 12 12 N 1.46897 * 109.47045 * 180.45783 * 11 9 4 13 13 C 1.46906 * 110.99815 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.46997 * 324.99878 * 13 12 11 15 15 C 1.53001 * 109.46954 * 84.99904 * 13 12 11 16 16 C 1.50696 * 109.47063 * 205.00254 * 13 12 11 17 17 H 1.07999 * 119.99910 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99861 * 180.02562 * 16 13 12 19 19 N 1.31509 * 120.00070 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99835 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47221 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46937 * 119.99893 * 20 18 16 23 23 H 1.48497 * 109.47073 * 239.99844 * 20 18 16 24 24 H 1.08001 * 119.99792 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00493 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46701 * 245.38176 * 3 2 1 27 27 H 1.08998 * 109.47089 * 5.38254 * 3 2 1 28 28 H 1.09003 * 109.47133 * 125.38150 * 3 2 1 29 29 H 1.08996 * 110.61980 * 158.56856 * 7 6 4 30 30 H 1.09006 * 110.61582 * 281.40378 * 7 6 4 31 31 H 1.09004 * 110.90363 * 81.25582 * 8 7 6 32 32 H 1.08998 * 110.90428 * 204.85331 * 8 7 6 33 33 H 1.08999 * 109.47174 * 300.46001 * 11 9 4 34 34 H 1.09000 * 109.47121 * 60.45754 * 11 9 4 35 35 H 1.00893 * 110.99888 * 56.04907 * 12 11 9 36 36 H 1.09001 * 109.47079 * 179.97438 * 15 13 12 37 37 H 1.08999 * 109.47325 * 300.00050 * 15 13 12 38 38 H 1.09004 * 109.46921 * 59.99876 * 15 13 12 39 39 H 0.97001 * 119.99713 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.9175 -1.2402 -0.6735 6 8 1.1936 -2.3719 -0.4139 7 6 1.5913 -3.5496 0.3205 8 6 1.8994 -3.0084 1.7398 9 6 2.5423 -1.6331 1.4281 10 1 3.6294 -1.7075 1.4582 11 6 2.0521 -0.5713 2.4146 12 7 2.5297 -0.8994 3.7645 13 6 2.0776 0.1012 4.7405 14 1 2.0620 1.0850 4.2716 15 6 0.6702 -0.2563 5.2227 16 6 3.0215 0.1195 5.9151 17 1 3.8720 -0.5459 5.9347 18 6 2.7989 0.9850 6.9650 19 7 1.7630 1.7948 6.9412 20 14 3.9686 1.0071 8.4213 21 1 5.0461 0.0083 8.2060 22 1 4.5674 2.3595 8.5546 23 1 3.2225 0.6718 9.6606 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 2.6159 1.4056 -0.9343 27 1 1.3592 2.1313 0.0964 28 1 2.7605 1.3222 0.8379 29 1 0.7777 -4.2740 0.3541 30 1 2.4823 -3.9952 -0.1221 31 1 0.9828 -2.8861 2.3168 32 1 2.6013 -3.6597 2.2605 33 1 2.4381 0.4045 2.1198 34 1 0.9624 -0.5472 2.4107 35 1 3.5343 -0.9911 3.7802 36 1 0.3349 0.4858 5.9472 37 1 -0.0125 -0.2695 4.3731 38 1 0.6858 -1.2402 5.6916 39 1 1.6066 2.4040 7.6798 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308892049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:31 Heat of formation + Delta-G solvation = -50.480050 kcal Electronic energy + Delta-G solvation = -17864.478288 eV Core-core repulsion = 15192.493961 eV Total energy + Delta-G solvation = -2671.984326 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99713 -37.71480 -36.08653 -34.81335 -33.02377 -30.42693 -29.25857 -28.14376 -27.37019 -25.49939 -23.49949 -21.86222 -21.55509 -19.36294 -18.39288 -17.52984 -16.94420 -16.70458 -16.27124 -15.93218 -15.42022 -15.21137 -14.75532 -14.26274 -13.94242 -13.83523 -13.68698 -13.17207 -12.90549 -12.73721 -12.68856 -12.65750 -12.41293 -12.21826 -12.13916 -12.10629 -11.78594 -11.61849 -11.35548 -10.87245 -10.67871 -10.57478 -9.84285 -8.97367 -8.13442 -6.27779 1.32775 1.41212 1.43092 1.54765 2.41325 2.93740 3.15233 3.42825 3.71087 3.80006 4.09615 4.18844 4.23617 4.34884 4.45954 4.54883 4.61452 4.73015 4.75481 4.81642 4.88427 4.92247 5.02195 5.06614 5.09938 5.18147 5.22602 5.25715 5.32760 5.47746 5.67021 5.68347 5.83345 5.86103 6.13731 6.22031 6.48904 6.79803 7.03248 7.43131 8.92595 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.033346 B = 0.005822 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.486472 B = 4808.404470 C = 5133.866553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.136 4.136 3 C -0.119 4.119 4 C 0.119 3.881 5 H 0.088 0.912 6 O -0.389 6.389 7 C 0.045 3.955 8 C -0.132 4.132 9 C -0.105 4.105 10 H 0.092 0.908 11 C 0.073 3.927 12 N -0.684 5.684 13 C 0.219 3.781 14 H -0.034 1.034 15 C -0.111 4.111 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.029 0.971 34 H 0.049 0.951 35 H 0.332 0.668 36 H 0.055 0.945 37 H 0.015 0.985 38 H 0.027 0.973 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -6.332 -13.557 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.136 4.136 3 C -0.175 4.175 4 C 0.061 3.939 5 H 0.106 0.894 6 O -0.309 6.309 7 C -0.031 4.031 8 C -0.170 4.170 9 C -0.124 4.124 10 H 0.110 0.890 11 C -0.057 4.057 12 N -0.314 5.314 13 C 0.110 3.890 14 H -0.016 1.016 15 C -0.170 4.170 16 C -0.574 4.574 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.559 5.559 20 Si 0.789 3.211 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.207 1.207 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.149 0.851 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.887 -6.611 -13.476 15.037 hybrid contribution 0.861 1.075 0.948 1.672 sum 1.748 -5.536 -12.528 13.808 Atomic orbital electron populations 1.23724 0.95682 1.01941 1.01005 1.21779 0.95961 0.95156 1.00745 1.21004 1.00426 0.93383 1.02699 1.21620 0.91955 0.85866 0.94501 0.89402 1.88831 1.57440 1.19604 1.64982 1.23731 1.01424 0.88071 0.89865 1.23012 1.01304 0.95335 0.97315 1.22502 1.01097 0.95640 0.93121 0.88958 1.22120 0.99225 0.95935 0.88377 1.60612 1.16285 1.49768 1.04761 1.18849 0.93321 0.87080 0.89737 1.01612 1.21523 0.97165 0.99629 0.98640 1.21637 1.10656 1.20577 1.04538 0.92070 1.25756 0.97008 0.94905 1.01061 1.70040 1.29288 1.23612 1.32960 0.85430 0.78926 0.77897 0.78892 1.18903 1.20647 1.20698 0.87968 0.88541 0.89842 0.91565 0.91848 0.87956 0.90372 0.92307 0.89274 0.95310 0.93205 0.85137 0.92573 0.96610 0.95392 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.22 13.06 67.79 0.89 -4.33 16 2 C -0.14 -3.68 3.58 -16.47 -0.06 -3.74 16 3 C -0.12 -2.87 9.73 71.24 0.69 -2.17 16 4 C 0.12 3.06 3.73 30.22 0.11 3.18 16 5 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 6 O -0.39 -10.48 9.79 -148.98 -1.46 -11.94 16 7 C 0.05 0.97 7.71 72.66 0.56 1.54 16 8 C -0.13 -3.43 6.53 31.95 0.21 -3.22 16 9 C -0.10 -2.89 3.23 -9.74 -0.03 -2.92 16 10 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 11 C 0.07 2.58 3.62 86.30 0.31 2.90 16 12 N -0.68 -28.67 6.09 -495.45 -3.02 -31.68 16 13 C 0.22 11.27 2.60 44.17 0.11 11.38 16 14 H -0.03 -1.93 7.80 -2.39 -0.02 -1.94 16 15 C -0.11 -5.72 9.19 71.98 0.66 -5.06 16 16 C -0.54 -29.44 8.59 25.60 0.22 -29.22 16 17 H 0.06 3.27 7.62 -2.91 -0.02 3.25 16 18 C 0.01 0.65 5.30 84.66 0.45 1.10 16 19 N -0.92 -53.41 11.32 21.45 0.24 -53.17 16 20 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H 0.10 2.61 7.84 -2.91 -0.02 2.59 16 25 H 0.10 2.82 7.05 -2.91 -0.02 2.80 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.56 7.79 -2.39 -0.02 1.54 16 28 H 0.06 1.68 5.85 -2.39 -0.01 1.67 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.06 1.81 7.86 -2.39 -0.02 1.80 16 32 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.03 1.05 4.80 -2.39 -0.01 1.04 16 34 H 0.05 1.96 6.44 -2.39 -0.02 1.95 16 35 H 0.33 13.37 8.22 -89.70 -0.74 12.63 16 36 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 37 H 0.01 0.72 7.45 -2.39 -0.02 0.70 16 38 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -61.00 305.03 2.20 -58.80 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.28 Total: 23.19 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 4.13 Total: -30.58 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -2.78 Total: -84.86 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -1.46 Total: -11.94 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -61.00 2.20 -58.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308892049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.316 kcal (2) G-P(sol) polarization free energy of solvation -60.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds