Wall clock time and date at job start Mon Mar 30 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47154 * 2 1 4 4 C 1.50700 * 109.47252 * 239.99926 * 2 1 3 5 5 H 1.07996 * 120.00172 * 239.99940 * 4 2 1 6 6 C 1.37877 * 120.00134 * 59.99483 * 4 2 1 7 7 N 1.31515 * 119.99520 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00396 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47530 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47210 * 300.00545 * 8 6 4 11 11 H 1.48504 * 109.46890 * 60.00168 * 8 6 4 12 12 N 1.46902 * 109.47433 * 120.00114 * 2 1 3 13 13 C 1.46902 * 110.99694 * 263.69057 * 12 2 1 14 14 C 1.52999 * 109.54710 * 294.47721 * 13 12 2 15 15 C 1.53005 * 117.49589 * 2.10799 * 14 13 12 16 16 C 1.53000 * 117.49835 * 293.44736 * 14 13 12 17 17 C 1.53177 * 109.54238 * 174.29991 * 13 12 2 18 18 C 1.53281 * 109.06253 * 297.02869 * 17 13 12 19 19 O 1.42899 * 109.46122 * 302.44385 * 18 17 13 20 20 C 1.42903 * 114.09758 * 61.15966 * 19 18 17 21 21 C 1.53088 * 109.41616 * 298.84224 * 20 19 18 22 22 H 1.09003 * 109.47076 * 306.44177 * 1 2 3 23 23 H 1.08993 * 109.47462 * 66.44635 * 1 2 3 24 24 H 1.09002 * 109.47232 * 186.44794 * 1 2 3 25 25 H 0.97002 * 119.99913 * 179.97438 * 7 6 4 26 26 H 1.00897 * 111.00658 * 139.73827 * 12 2 1 27 27 H 1.08995 * 115.55224 * 147.77398 * 14 13 12 28 28 H 1.09004 * 117.49598 * 359.97438 * 15 14 13 29 29 H 1.08995 * 117.49862 * 145.02149 * 15 14 13 30 30 H 1.08999 * 117.50181 * 214.97660 * 16 14 13 31 31 H 1.09002 * 117.49656 * 359.97438 * 16 14 13 32 32 H 1.08994 * 109.52559 * 57.01954 * 17 13 12 33 33 H 1.09001 * 109.52256 * 177.21168 * 17 13 12 34 34 H 1.09004 * 109.45892 * 182.45085 * 18 17 13 35 35 H 1.08997 * 109.45684 * 62.44321 * 18 17 13 36 36 H 1.09003 * 109.48133 * 178.85714 * 20 19 18 37 37 H 1.09004 * 109.49082 * 58.83003 * 20 19 18 38 38 H 1.09007 * 109.52069 * 297.70228 * 21 20 19 39 39 H 1.08999 * 109.52377 * 177.51615 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8267 -0.4200 -5.2205 10 1 3.8063 -1.1210 -4.0082 11 1 1.8257 -2.5203 -4.0076 12 7 2.0197 -0.6925 1.1994 13 6 2.3373 0.2650 2.2673 14 6 3.5138 1.1423 1.8350 15 6 4.0844 0.9182 0.4331 16 6 4.8747 0.4645 1.6631 17 6 2.7074 -0.4958 3.5442 18 6 1.4954 -1.3096 4.0112 19 8 0.3862 -0.4336 4.2217 20 6 -0.0327 0.2693 3.0501 21 6 1.1157 1.1465 2.5450 22 1 -0.3633 0.6105 0.8267 23 1 -0.3634 0.4106 -0.9420 24 1 -0.3634 -1.0212 0.1154 25 1 0.7093 1.1616 -3.4844 26 1 2.8179 -1.2704 0.9828 27 1 3.5047 2.1629 2.2173 28 1 3.6217 0.1455 -0.1810 29 1 4.4510 1.7913 -0.1066 30 1 5.7609 1.0393 1.9320 31 1 4.9318 -0.6064 1.8584 32 1 3.5421 -1.1662 3.3398 33 1 2.9908 0.2137 4.3217 34 1 1.7378 -1.8195 4.9437 35 1 1.2376 -2.0462 3.2503 36 1 -0.8911 0.8968 3.2900 37 1 -0.3107 -0.4465 2.2765 38 1 1.3671 1.8891 3.3024 39 1 0.8131 1.6496 1.6266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380096555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:11 Heat of formation + Delta-G solvation = -9.729627 kcal Electronic energy + Delta-G solvation = -18965.553732 eV Core-core repulsion = 16295.336476 eV Total energy + Delta-G solvation = -2670.217255 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95258 -37.12735 -34.43538 -32.79700 -31.12518 -30.42902 -27.71900 -25.17566 -24.43599 -23.36867 -21.55349 -20.60617 -20.02464 -18.01465 -16.70277 -16.17064 -15.48026 -14.94261 -14.68749 -14.49560 -14.18773 -13.70688 -13.41558 -12.48546 -12.26136 -11.95520 -11.73609 -11.53752 -11.26002 -11.03784 -10.93005 -10.71629 -10.60186 -10.45267 -10.18577 -10.15119 -9.89043 -9.75207 -9.47504 -9.22053 -8.95941 -8.81623 -8.46351 -7.25236 -6.08226 -4.15535 3.26363 3.31693 3.34270 4.34487 4.38355 4.40072 4.99846 5.21090 5.27715 5.36760 5.45714 5.54260 5.61147 5.73332 5.83960 5.88212 6.02591 6.04495 6.14321 6.18665 6.28219 6.42021 6.51313 6.62797 6.64288 6.67924 6.74967 6.90616 7.17128 7.21710 7.30873 7.49754 7.70424 7.73499 7.94952 8.24528 8.36182 8.64530 8.97527 9.50026 10.95966 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.008946 C = 0.007792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.827264 B = 3129.037547 C = 3592.648070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.207 3.793 3 H 0.026 0.974 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.891 3.109 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.679 5.679 13 C 0.147 3.853 14 C -0.178 4.178 15 C -0.184 4.184 16 C -0.193 4.193 17 C -0.134 4.134 18 C 0.070 3.930 19 O -0.395 6.395 20 C 0.062 3.938 21 C -0.139 4.139 22 H 0.019 0.981 23 H 0.079 0.921 24 H 0.026 0.974 25 H 0.262 0.738 26 H 0.331 0.669 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 -0.526 8.899 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.100 3.900 3 H 0.043 0.957 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.719 3.281 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.310 5.310 13 C 0.055 3.945 14 C -0.198 4.198 15 C -0.220 4.220 16 C -0.230 4.230 17 C -0.173 4.173 18 C -0.007 4.007 19 O -0.314 6.314 20 C -0.014 4.014 21 C -0.177 4.177 22 H 0.037 0.963 23 H 0.097 0.903 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.106 0.894 28 H 0.169 0.831 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.963 -0.517 9.162 9.384 hybrid contribution 1.457 0.153 -1.526 2.116 sum 3.420 -0.364 7.636 8.375 Atomic orbital electron populations 1.22108 0.98455 0.98375 1.00738 1.19245 0.92080 0.93882 0.84822 0.95673 1.21259 1.31641 1.12574 0.90850 0.92493 1.24887 0.94853 0.94853 0.98917 1.69880 1.35921 1.22493 1.23615 0.86676 0.79173 0.79887 0.82383 1.21321 1.20281 1.20239 1.60973 1.37263 1.22174 1.10581 1.20376 0.91278 0.90875 0.91996 1.23022 0.94823 0.99797 1.02197 1.23963 1.01928 1.05344 0.90811 1.22892 0.94382 1.00098 1.05650 1.22173 0.98388 0.99549 0.97155 1.22446 0.85917 0.92091 1.00211 1.87779 1.49648 1.59405 1.34609 1.22744 0.95450 0.95290 0.87903 1.22273 0.95828 0.97900 1.01720 0.96271 0.90256 0.95462 0.92816 0.85100 0.89398 0.83143 0.90316 0.90305 0.89508 0.91534 0.91923 0.90562 0.91878 0.90535 0.90399 0.92505 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 7.64 37.15 0.28 -2.94 16 2 C 0.21 4.75 0.93 -68.87 -0.06 4.69 16 3 H 0.03 0.64 5.06 -51.93 -0.26 0.38 16 4 C -0.52 -13.28 6.58 -34.44 -0.23 -13.50 16 5 H 0.06 1.43 7.46 -52.49 -0.39 1.04 16 6 C 0.07 1.78 5.28 -17.82 -0.09 1.68 16 7 N -0.88 -23.95 11.29 55.43 0.63 -23.32 16 8 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.68 -13.31 4.65 -94.06 -0.44 -13.74 16 13 C 0.15 2.55 0.39 -131.42 -0.05 2.50 16 14 C -0.18 -3.10 4.78 -90.62 -0.43 -3.53 16 15 C -0.18 -3.51 8.11 -26.69 -0.22 -3.73 16 16 C -0.19 -3.09 9.46 -26.69 -0.25 -3.34 16 17 C -0.13 -2.05 4.82 -26.49 -0.13 -2.18 16 18 C 0.07 1.08 6.68 37.30 0.25 1.32 16 19 O -0.40 -6.79 10.77 -35.23 -0.38 -7.17 16 20 C 0.06 1.07 5.67 37.20 0.21 1.28 16 21 C -0.14 -2.44 4.26 -26.59 -0.11 -2.56 16 22 H 0.02 0.39 4.10 -51.93 -0.21 0.18 16 23 H 0.08 2.06 5.92 -51.93 -0.31 1.75 16 24 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.33 6.55 6.81 -39.29 -0.27 6.28 16 27 H 0.09 1.50 8.06 -51.93 -0.42 1.08 16 28 H 0.15 3.28 3.19 -51.93 -0.17 3.11 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.33 7.20 -51.93 -0.37 0.96 16 32 H 0.07 0.95 7.06 -51.93 -0.37 0.59 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.03 7.75 -51.93 -0.40 0.63 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.46 5.48 -51.93 -0.28 1.18 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.67 5.27 -51.93 -0.27 1.39 16 LS Contribution 280.76 15.07 4.23 4.23 Total: -1.00 -25.89 280.76 -7.63 -33.52 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.82 Total: 11.33 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -0.83 Total: -20.31 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.19 Total: -37.07 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.38 Total: -7.17 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -25.89 -7.63 -33.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380096555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.792 kcal (2) G-P(sol) polarization free energy of solvation -25.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds