Wall clock time and date at job start Mon Mar 30 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47154 * 2 1 4 4 C 1.50700 * 109.47252 * 239.99926 * 2 1 3 5 5 H 1.07996 * 120.00172 * 239.99940 * 4 2 1 6 6 C 1.37877 * 120.00134 * 59.99483 * 4 2 1 7 7 N 1.31515 * 119.99520 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00396 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47530 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47210 * 300.00545 * 8 6 4 11 11 H 1.48504 * 109.46890 * 60.00168 * 8 6 4 12 12 N 1.46902 * 109.47433 * 120.00114 * 2 1 3 13 13 C 1.46902 * 110.99694 * 263.69057 * 12 2 1 14 14 C 1.52999 * 109.54710 * 294.47721 * 13 12 2 15 15 C 1.53005 * 117.49589 * 2.10799 * 14 13 12 16 16 C 1.53000 * 117.49835 * 293.44736 * 14 13 12 17 17 C 1.53177 * 109.54238 * 174.29991 * 13 12 2 18 18 C 1.53281 * 109.06253 * 297.02869 * 17 13 12 19 19 O 1.42899 * 109.46122 * 302.44385 * 18 17 13 20 20 C 1.42903 * 114.09758 * 61.15966 * 19 18 17 21 21 C 1.53088 * 109.41616 * 298.84224 * 20 19 18 22 22 H 1.09003 * 109.47076 * 306.44177 * 1 2 3 23 23 H 1.08993 * 109.47462 * 66.44635 * 1 2 3 24 24 H 1.09002 * 109.47232 * 186.44794 * 1 2 3 25 25 H 0.97002 * 119.99913 * 179.97438 * 7 6 4 26 26 H 1.00897 * 111.00658 * 139.73827 * 12 2 1 27 27 H 1.08995 * 115.55224 * 147.77398 * 14 13 12 28 28 H 1.09004 * 117.49598 * 359.97438 * 15 14 13 29 29 H 1.08995 * 117.49862 * 145.02149 * 15 14 13 30 30 H 1.08999 * 117.50181 * 214.97660 * 16 14 13 31 31 H 1.09002 * 117.49656 * 359.97438 * 16 14 13 32 32 H 1.08994 * 109.52559 * 57.01954 * 17 13 12 33 33 H 1.09001 * 109.52256 * 177.21168 * 17 13 12 34 34 H 1.09004 * 109.45892 * 182.45085 * 18 17 13 35 35 H 1.08997 * 109.45684 * 62.44321 * 18 17 13 36 36 H 1.09003 * 109.48133 * 178.85714 * 20 19 18 37 37 H 1.09004 * 109.49082 * 58.83003 * 20 19 18 38 38 H 1.09007 * 109.52069 * 297.70228 * 21 20 19 39 39 H 1.08999 * 109.52377 * 177.51615 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8267 -0.4200 -5.2205 10 1 3.8063 -1.1210 -4.0082 11 1 1.8257 -2.5203 -4.0076 12 7 2.0197 -0.6925 1.1994 13 6 2.3373 0.2650 2.2673 14 6 3.5138 1.1423 1.8350 15 6 4.0844 0.9182 0.4331 16 6 4.8747 0.4645 1.6631 17 6 2.7074 -0.4958 3.5442 18 6 1.4954 -1.3096 4.0112 19 8 0.3862 -0.4336 4.2217 20 6 -0.0327 0.2693 3.0501 21 6 1.1157 1.1465 2.5450 22 1 -0.3633 0.6105 0.8267 23 1 -0.3634 0.4106 -0.9420 24 1 -0.3634 -1.0212 0.1154 25 1 0.7093 1.1616 -3.4844 26 1 2.8179 -1.2704 0.9828 27 1 3.5047 2.1629 2.2173 28 1 3.6217 0.1455 -0.1810 29 1 4.4510 1.7913 -0.1066 30 1 5.7609 1.0393 1.9320 31 1 4.9318 -0.6064 1.8584 32 1 3.5421 -1.1662 3.3398 33 1 2.9908 0.2137 4.3217 34 1 1.7378 -1.8195 4.9437 35 1 1.2376 -2.0462 3.2503 36 1 -0.8911 0.8968 3.2900 37 1 -0.3107 -0.4465 2.2765 38 1 1.3671 1.8891 3.3024 39 1 0.8131 1.6496 1.6266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380096555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:11 Heat of formation + Delta-G solvation = -25.189706 kcal Electronic energy + Delta-G solvation = -18966.224131 eV Core-core repulsion = 16295.336476 eV Total energy + Delta-G solvation = -2670.887655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.38173 -38.50788 -36.15789 -34.41545 -32.68215 -31.90260 -29.38306 -27.14580 -25.84198 -24.71420 -22.96024 -22.12034 -21.62761 -19.49719 -18.57038 -17.55419 -16.92817 -16.63809 -16.24726 -15.96110 -15.52433 -15.33288 -14.93795 -14.13087 -13.74540 -13.47347 -13.17038 -13.02616 -12.93410 -12.76994 -12.63259 -12.37448 -12.19640 -12.03649 -11.90175 -11.75175 -11.48976 -11.20754 -10.90546 -10.69899 -10.65276 -10.40550 -10.31687 -8.88587 -8.07687 -6.19484 1.42220 1.43579 1.49736 2.42783 3.00608 3.12456 3.18921 3.56767 3.93580 3.96029 4.06663 4.21372 4.29883 4.37773 4.47861 4.57181 4.70635 4.81433 4.83600 4.91131 4.92395 5.01981 5.12164 5.16487 5.21226 5.22535 5.29313 5.32119 5.36015 5.49851 5.60075 5.64918 5.76974 6.05281 6.32579 6.43187 6.55020 6.89138 7.11240 7.48992 8.95391 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.008946 C = 0.007792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.827264 B = 3129.037547 C = 3592.648070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.221 3.779 3 H 0.003 0.997 4 C -0.528 4.528 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.947 3.053 9 H -0.289 1.289 10 H -0.272 1.272 11 H -0.275 1.275 12 N -0.672 5.672 13 C 0.143 3.857 14 C -0.178 4.178 15 C -0.212 4.212 16 C -0.162 4.162 17 C -0.127 4.127 18 C 0.067 3.933 19 O -0.401 6.401 20 C 0.066 3.934 21 C -0.138 4.138 22 H 0.038 0.962 23 H 0.050 0.950 24 H 0.019 0.981 25 H 0.259 0.741 26 H 0.330 0.670 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -1.153 10.552 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.113 3.887 3 H 0.020 0.980 4 C -0.567 4.567 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.773 3.227 9 H -0.215 1.215 10 H -0.198 1.198 11 H -0.200 1.200 12 N -0.303 5.303 13 C 0.051 3.949 14 C -0.198 4.198 15 C -0.249 4.249 16 C -0.199 4.199 17 C -0.165 4.165 18 C -0.010 4.010 19 O -0.320 6.320 20 C -0.010 4.010 21 C -0.176 4.176 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.038 0.962 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.111 0.889 28 H 0.142 0.858 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.121 -1.156 10.830 11.330 hybrid contribution 1.114 0.354 -1.988 2.306 sum 4.235 -0.802 8.841 9.836 Atomic orbital electron populations 1.21981 0.98874 0.97935 0.99943 1.18922 0.91562 0.92623 0.85585 0.97963 1.21553 1.30983 1.12275 0.91879 0.92699 1.25553 0.95275 0.95555 1.01482 1.70006 1.37227 1.23813 1.23827 0.85790 0.78762 0.78760 0.79356 1.21474 1.19768 1.20036 1.60886 1.37381 1.22420 1.09624 1.20507 0.91338 0.90774 0.92236 1.23039 0.95811 1.00371 1.00601 1.23730 1.04615 1.04752 0.91784 1.22959 0.94213 1.00901 1.01830 1.22131 0.98755 0.99732 0.95850 1.22603 0.85351 0.91632 1.01397 1.87781 1.50388 1.59593 1.34257 1.22652 0.95835 0.94929 0.87606 1.22242 0.96171 0.98207 1.00957 0.94319 0.93140 0.96183 0.93132 0.85158 0.88885 0.85812 0.91294 0.88135 0.88438 0.90172 0.90609 0.87640 0.93216 0.89039 0.92439 0.90980 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 7.64 71.98 0.55 -5.59 16 2 C 0.22 10.32 0.93 44.17 0.04 10.36 16 3 H 0.00 0.14 5.06 -2.39 -0.01 0.13 16 4 C -0.53 -27.10 6.58 25.60 0.17 -26.93 16 5 H 0.05 2.78 7.46 -2.91 -0.02 2.76 16 6 C 0.02 1.13 5.28 84.65 0.45 1.58 16 7 N -0.91 -50.74 11.29 21.45 0.24 -50.49 16 8 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 9 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 N -0.67 -25.97 4.65 -451.51 -2.10 -28.07 16 13 C 0.14 4.74 0.39 3.65 0.00 4.74 16 14 C -0.18 -5.90 4.78 -10.79 -0.05 -5.95 16 15 C -0.21 -8.01 8.11 30.62 0.25 -7.76 16 16 C -0.16 -4.74 9.46 30.62 0.29 -4.45 16 17 C -0.13 -3.44 4.82 30.75 0.15 -3.29 16 18 C 0.07 1.85 6.68 72.08 0.48 2.33 16 19 O -0.40 -12.78 10.77 -148.98 -1.60 -14.39 16 20 C 0.07 2.17 5.67 72.01 0.41 2.58 16 21 C -0.14 -4.66 4.26 30.68 0.13 -4.53 16 22 H 0.04 1.64 4.10 -2.39 -0.01 1.63 16 23 H 0.05 2.69 5.92 -2.39 -0.01 2.68 16 24 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 25 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 26 H 0.33 12.80 6.81 -89.70 -0.61 12.19 16 27 H 0.09 2.99 8.06 -2.39 -0.02 2.97 16 28 H 0.12 5.44 3.19 -2.39 -0.01 5.43 16 29 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.10 2.66 7.20 -2.39 -0.02 2.64 16 32 H 0.08 1.98 7.06 -2.39 -0.02 1.97 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.05 1.52 7.75 -2.39 -0.02 1.50 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.06 2.13 5.48 -2.39 -0.01 2.11 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.06 2.36 5.27 -2.39 -0.01 2.35 16 Total: -1.00 -55.41 280.76 1.87 -53.54 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.44 Total: 31.83 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: 2.86 Total: -36.92 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -1.86 Total: -78.56 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.60 Total: -14.39 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -55.41 1.87 -53.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380096555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.347 kcal (2) G-P(sol) polarization free energy of solvation -55.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds