Wall clock time and date at job start Mon Mar 30 2020 03:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47437 * 2 1 4 4 C 1.50696 * 109.47439 * 239.99424 * 2 1 3 5 5 H 1.08006 * 119.99799 * 240.00454 * 4 2 1 6 6 C 1.37876 * 119.99897 * 60.00166 * 4 2 1 7 7 N 1.31506 * 120.00013 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99900 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47103 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46731 * 120.00234 * 8 6 4 11 11 H 1.48501 * 109.47101 * 239.99968 * 8 6 4 12 12 N 1.46909 * 109.46637 * 119.99586 * 2 1 3 13 13 C 1.50310 * 110.99655 * 181.36058 * 12 2 1 14 14 C 1.56021 * 106.16728 * 145.96695 * 13 12 2 15 15 C 1.53005 * 110.74689 * 248.11761 * 14 13 12 16 16 C 1.52996 * 110.91032 * 124.83858 * 14 13 12 17 17 C 1.50710 * 102.78824 * 6.43812 * 14 13 12 18 18 H 1.08997 * 110.12547 * 81.62839 * 17 14 13 19 19 C 1.50405 * 124.35213 * 217.59913 * 17 14 13 20 20 O 1.45482 * 104.47439 * 144.36150 * 19 17 14 21 21 C 1.45983 * 109.05869 * 352.06966 * 20 19 17 22 22 C 1.44076 * 111.00096 * 294.99622 * 12 2 1 23 23 H 1.08994 * 109.93628 * 308.33530 * 22 12 2 24 24 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47322 * 300.00963 * 1 2 3 26 26 H 1.09000 * 109.46913 * 60.00287 * 1 2 3 27 27 H 0.97004 * 120.00139 * 180.02562 * 7 6 4 28 28 H 1.09002 * 110.11568 * 265.13952 * 13 12 2 29 29 H 1.09000 * 110.11933 * 26.78700 * 13 12 2 30 30 H 1.08999 * 109.47156 * 173.37050 * 15 14 13 31 31 H 1.09000 * 109.46774 * 293.36440 * 15 14 13 32 32 H 1.08993 * 109.47157 * 53.36590 * 15 14 13 33 33 H 1.09004 * 109.46850 * 306.53620 * 16 14 13 34 34 H 1.08995 * 109.47033 * 66.53665 * 16 14 13 35 35 H 1.09001 * 109.47124 * 186.54245 * 16 14 13 36 36 H 1.08997 * 111.57515 * 25.19759 * 19 17 14 37 37 H 1.09003 * 109.72132 * 262.59808 * 19 17 14 38 38 H 1.08994 * 110.76786 * 216.38559 * 21 20 19 39 39 H 1.09003 * 110.76643 * 92.99245 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9437 0.8300 -2.6034 8 14 2.3216 -1.1207 -4.0078 9 1 3.1456 -2.2880 -3.6035 10 1 1.1662 -1.5870 -4.8159 11 1 3.1468 -0.1878 -4.8164 12 7 2.0196 -0.6925 1.1996 13 6 3.5217 -0.6837 1.2511 14 6 3.9041 -0.5882 2.7607 15 6 4.5491 0.7640 3.0719 16 6 4.8338 -1.7350 3.1622 17 6 2.5705 -0.7151 3.4513 18 1 2.2851 -1.7644 3.5257 19 6 2.1793 0.0464 4.6879 20 8 0.7618 0.3223 4.5118 21 6 0.3634 -0.0713 3.1636 22 6 1.6558 0.0252 2.3947 23 1 1.9602 1.0683 2.3090 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7091 1.1611 -3.4845 28 1 3.9169 -1.6045 0.8220 29 1 3.9104 0.1793 0.7106 30 1 4.6998 0.8556 4.1475 31 1 5.5105 0.8335 2.5631 32 1 3.8965 1.5658 2.7268 33 1 4.3807 -2.6856 2.8805 34 1 5.7903 -1.6230 2.6519 35 1 4.9924 -1.7136 4.2404 36 1 2.7375 0.9783 4.7782 37 1 2.3367 -0.5763 5.5686 38 1 -0.3775 0.6200 2.7622 39 1 -0.0156 -1.0932 3.1555 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384829411.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:14 Heat of formation + Delta-G solvation = -43.464792 kcal Electronic energy + Delta-G solvation = -18645.972719 eV Core-core repulsion = 15974.292597 eV Total energy + Delta-G solvation = -2671.680122 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.16491 -38.23375 -36.59531 -34.35298 -31.54230 -30.44530 -29.57433 -28.29256 -27.15782 -25.76820 -23.71829 -22.57995 -21.12142 -19.57451 -18.26125 -17.89429 -16.97503 -16.53538 -16.00400 -15.66719 -15.34727 -14.85205 -14.69483 -14.44679 -14.37883 -13.68554 -13.44574 -13.29527 -13.07641 -12.87420 -12.74907 -12.65825 -12.50404 -12.44000 -12.18665 -12.00430 -11.64510 -11.50570 -11.27923 -11.10891 -10.81754 -10.56335 -10.54768 -9.19452 -8.14589 -6.26821 1.38873 1.40909 1.52625 2.39223 2.73269 2.83492 3.13297 3.33282 3.77668 3.84058 4.09474 4.15238 4.27677 4.29802 4.39829 4.56440 4.64756 4.74757 4.76301 4.81767 4.83721 4.90291 4.91340 5.01314 5.03298 5.07135 5.14767 5.15321 5.24544 5.37851 5.43116 5.50833 5.63440 5.68139 5.75963 6.13655 6.25668 6.63269 6.85828 7.42623 8.91784 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029535 B = 0.008051 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.788200 B = 3476.965948 C = 4101.228830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.207 3.793 3 H -0.039 1.039 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.490 5.490 13 C 0.058 3.942 14 C -0.053 4.053 15 C -0.137 4.137 16 C -0.127 4.127 17 C -0.120 4.120 18 H 0.090 0.910 19 C 0.066 3.934 20 O -0.406 6.406 21 C 0.078 3.922 22 C 0.014 3.986 23 H 0.028 0.972 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.262 0.738 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -2.687 12.706 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 H -0.021 1.021 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.215 5.215 13 C -0.070 4.070 14 C -0.053 4.053 15 C -0.194 4.194 16 C -0.184 4.184 17 C -0.139 4.139 18 H 0.108 0.892 19 C -0.009 4.009 20 O -0.326 6.326 21 C 0.002 3.998 22 C -0.097 4.097 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.596 -3.027 12.706 14.210 hybrid contribution 0.348 0.717 -1.639 1.823 sum 5.944 -2.310 11.067 12.773 Atomic orbital electron populations 1.21651 0.97175 0.99294 0.99797 1.19265 0.92924 0.90030 0.87798 1.02117 1.21349 1.31058 1.12198 0.90853 0.92557 1.25725 0.95352 0.95744 1.01975 1.70024 1.37781 1.24187 1.24037 0.85466 0.78151 0.78618 0.79169 1.19104 1.20561 1.20670 1.64561 1.08177 1.47923 1.00868 1.23724 0.87499 1.00330 0.95405 1.20792 0.94052 0.97734 0.92734 1.21872 1.00249 0.94491 1.02758 1.21764 0.98419 0.96054 1.02213 1.22738 0.96325 1.00771 0.94041 0.89197 1.22466 0.81400 0.99875 0.97205 1.89253 1.25855 1.86261 1.31191 1.22423 0.95028 1.00857 0.81518 1.23083 0.97573 0.95947 0.93107 0.95436 0.94905 0.95159 0.92136 0.92903 0.91148 0.95501 0.89884 0.91628 0.94768 0.92763 0.91808 0.90443 0.90235 0.88235 0.89920 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.82 71.98 0.63 -5.41 16 2 C 0.21 10.73 1.74 44.17 0.08 10.80 16 3 H -0.04 -2.26 7.97 -2.39 -0.02 -2.28 16 4 C -0.52 -28.66 8.11 25.60 0.21 -28.46 16 5 H 0.06 3.12 7.38 -2.91 -0.02 3.10 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 8 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 N -0.49 -21.14 5.09 -835.10 -4.25 -25.39 16 13 C 0.06 2.20 5.13 86.68 0.44 2.64 16 14 C -0.05 -1.45 0.90 -51.88 -0.05 -1.50 16 15 C -0.14 -3.36 7.46 71.98 0.54 -2.82 16 16 C -0.13 -2.74 8.40 71.98 0.60 -2.14 16 17 C -0.12 -3.44 2.32 -10.54 -0.02 -3.46 16 18 H 0.09 2.64 7.98 -2.39 -0.02 2.62 16 19 C 0.07 1.67 7.23 71.14 0.51 2.19 16 20 O -0.41 -12.89 11.59 -148.98 -1.73 -14.61 16 21 C 0.08 2.65 6.74 71.23 0.48 3.13 16 22 C 0.01 0.50 1.75 46.53 0.08 0.59 16 23 H 0.03 1.13 6.77 -2.39 -0.02 1.11 16 24 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.03 1.33 5.40 -2.39 -0.01 1.32 16 26 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 28 H 0.07 2.71 7.61 -2.39 -0.02 2.69 16 29 H 0.03 1.14 7.40 -2.39 -0.02 1.12 16 30 H 0.08 1.58 7.31 -2.39 -0.02 1.56 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.03 0.98 6.95 -2.39 -0.02 0.97 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.85 6.60 -2.39 -0.02 1.84 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 2.85 6.75 -2.39 -0.02 2.83 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -61.74 292.25 1.26 -60.48 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.01 Total: 10.22 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 3.96 Total: -23.40 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -4.01 Total: -78.61 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -1.73 Total: -14.61 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -61.74 1.26 -60.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384829411.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.020 kcal (2) G-P(sol) polarization free energy of solvation -61.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds