Wall clock time and date at job start Mon Mar 30 2020 04:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47175 * 2 1 4 4 C 1.46901 * 111.00478 * 64.87942 * 3 2 1 5 5 C 1.52997 * 109.46923 * 64.57996 * 4 3 2 6 6 C 1.50703 * 115.55130 * 64.24698 * 5 4 3 7 7 H 1.08002 * 120.00031 * 219.75988 * 6 5 4 8 8 C 1.37876 * 119.99571 * 39.76260 * 6 5 4 9 9 N 1.31505 * 120.00491 * 11.68156 * 8 6 5 10 10 Si 1.86801 * 119.99448 * 191.95796 * 8 6 5 11 11 H 1.48505 * 109.47117 * 274.72236 * 10 8 6 12 12 H 1.48492 * 109.47448 * 34.72503 * 10 8 6 13 13 H 1.48508 * 109.47097 * 154.72729 * 10 8 6 14 14 C 1.52998 * 117.51583 * 209.95095 * 5 4 3 15 15 C 1.52995 * 60.00125 * 107.47971 * 14 5 4 16 16 C 1.46899 * 110.99759 * 300.92245 * 3 2 1 17 17 H 1.09004 * 110.43615 * 70.37686 * 16 3 2 18 18 C 1.54816 * 110.49283 * 307.69200 * 16 3 2 19 19 C 1.54990 * 102.09300 * 220.44369 * 18 16 3 20 20 O 1.44384 * 103.49403 * 37.01905 * 19 18 16 21 21 C 1.43740 * 106.97396 * 319.94374 * 20 19 18 22 22 H 1.08992 * 109.47245 * 184.71222 * 1 2 3 23 23 H 1.09005 * 109.46993 * 304.71987 * 1 2 3 24 24 H 1.09006 * 109.46667 * 64.71211 * 1 2 3 25 25 H 1.08996 * 109.46929 * 239.99779 * 2 1 3 26 26 H 1.08997 * 109.46773 * 119.99237 * 2 1 3 27 27 H 1.08999 * 109.46625 * 304.58092 * 4 3 2 28 28 H 1.08996 * 109.46730 * 184.57841 * 4 3 2 29 29 H 0.97001 * 120.00495 * 174.87325 * 9 8 6 30 30 H 1.09005 * 117.49587 * 214.97022 * 14 5 4 31 31 H 1.09004 * 117.49909 * 359.97438 * 14 5 4 32 32 H 1.09004 * 117.50225 * 252.50849 * 15 14 5 33 33 H 1.09008 * 117.52022 * 107.48226 * 15 14 5 34 34 H 1.09001 * 110.90189 * 338.63747 * 18 16 3 35 35 H 1.08990 * 110.90757 * 102.24060 * 18 16 3 36 36 H 1.09003 * 110.61928 * 278.51620 * 19 18 16 37 37 H 1.09003 * 110.75428 * 155.58333 * 19 18 16 38 38 H 1.09004 * 109.87744 * 267.08957 * 21 20 19 39 39 H 1.08997 * 110.00524 * 146.00889 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6463 2.0755 1.2417 5 6 2.3474 1.4084 2.4268 6 6 3.8517 1.4981 2.4266 7 1 4.4433 0.6496 2.7372 8 6 4.4727 2.6635 2.0299 9 7 3.7688 3.7632 1.8732 10 14 6.3126 2.6783 1.7077 11 1 7.0370 2.9016 2.9847 12 1 6.7239 1.3751 1.1266 13 1 6.6397 3.7701 0.7557 14 6 1.6374 1.4479 3.7815 15 6 1.7156 0.1368 2.9967 16 6 1.5307 2.1162 -1.1765 17 1 0.4596 2.2999 -1.0924 18 6 1.8486 1.3318 -2.4729 19 6 2.2802 2.4637 -3.4397 20 8 3.0074 3.3751 -2.5881 21 6 2.2944 3.4444 -1.3419 22 1 -0.3633 -1.0241 0.0844 23 1 -0.3633 0.5853 0.8447 24 1 -0.3633 0.4390 -0.9293 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.5666 2.0178 1.3788 28 1 1.9497 3.1206 1.1814 29 1 4.2150 4.5995 1.6669 30 1 2.2585 1.5388 4.6727 31 1 0.6709 1.9495 3.8288 32 1 0.8003 -0.2243 2.5276 33 1 2.3880 -0.6351 3.3712 34 1 2.6639 0.6267 -2.3108 35 1 0.9614 0.8196 -2.8450 36 1 1.4073 2.9544 -3.8703 37 1 2.9270 2.0743 -4.2260 38 1 1.5905 4.2764 -1.3634 39 1 2.9958 3.5738 -0.5177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389731097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:49 Heat of formation + Delta-G solvation = -6.348472 kcal Electronic energy + Delta-G solvation = -18786.663773 eV Core-core repulsion = 16116.593135 eV Total energy + Delta-G solvation = -2670.070638 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.36099 -37.39799 -35.02155 -32.07545 -30.71114 -29.89131 -27.58137 -25.48876 -24.85883 -22.25718 -22.00396 -21.06280 -19.29947 -18.55187 -16.38825 -16.05302 -15.74170 -14.68563 -14.52456 -14.25280 -14.14445 -13.74315 -13.11676 -12.92432 -12.38370 -12.28755 -11.68255 -11.53934 -11.19737 -11.06131 -10.93214 -10.88136 -10.61514 -10.54761 -10.40607 -10.34127 -10.18301 -9.93533 -9.22724 -9.11130 -8.95292 -8.54677 -7.94132 -7.24639 -5.91893 -3.92564 3.38242 3.47695 3.51656 4.41138 4.50198 4.64111 4.97970 5.17038 5.33281 5.42987 5.55059 5.63783 5.67755 5.73179 5.74811 5.95747 5.97457 6.07005 6.12792 6.22204 6.25142 6.32936 6.40719 6.47674 6.65156 6.68072 6.70998 6.85459 6.89658 6.99116 7.21042 7.35904 7.38002 7.64427 8.03957 8.14714 8.18707 8.56767 9.00515 9.67340 11.11132 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.012702 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.109332 B = 2203.852341 C = 3266.891622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.043 3.957 3 N -0.496 5.496 4 C 0.084 3.916 5 C 0.070 3.930 6 C -0.469 4.469 7 H 0.055 0.945 8 C 0.083 3.917 9 N -0.884 5.884 10 Si 0.890 3.110 11 H -0.286 1.286 12 H -0.274 1.274 13 H -0.285 1.285 14 C -0.204 4.204 15 C -0.219 4.219 16 C 0.056 3.944 17 H 0.040 0.960 18 C -0.148 4.148 19 C 0.047 3.953 20 O -0.378 6.378 21 C 0.045 3.955 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.091 0.909 27 H -0.006 1.006 28 H 0.125 0.875 29 H 0.260 0.740 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 -3.484 -6.886 9.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.086 4.086 3 N -0.218 5.218 4 C -0.043 4.043 5 C 0.070 3.930 6 C -0.506 4.506 7 H 0.073 0.927 8 C -0.119 4.119 9 N -0.523 5.523 10 Si 0.718 3.282 11 H -0.212 1.212 12 H -0.199 1.199 13 H -0.211 1.211 14 C -0.242 4.242 15 C -0.256 4.256 16 C -0.053 4.053 17 H 0.058 0.942 18 C -0.186 4.186 19 C -0.030 4.030 20 O -0.296 6.296 21 C -0.031 4.031 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.012 0.988 28 H 0.142 0.858 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.283 -3.183 -7.093 9.400 hybrid contribution -0.378 -0.145 0.055 0.408 sum -5.661 -3.329 -7.039 9.626 Atomic orbital electron populations 1.22470 0.99938 1.01202 1.01290 1.22319 0.91353 0.92073 1.02812 1.62179 1.57818 1.00685 1.01155 1.22006 0.92516 1.02363 0.87389 1.18855 0.93877 0.91850 0.88451 1.20336 0.88539 0.98718 1.43000 0.92713 1.24756 0.97682 0.95414 0.94031 1.69692 1.34932 0.98864 1.48792 0.86652 0.85749 0.77950 0.77851 1.21217 1.19911 1.21079 1.22964 1.01004 1.00773 0.99492 1.22997 1.01983 0.92366 1.08271 1.22891 0.96281 0.94383 0.91762 0.94213 1.23233 1.01948 0.98706 0.94738 1.23432 0.95884 0.89817 0.93910 1.88872 1.49766 1.65304 1.25699 1.23487 0.97174 0.94795 0.87683 0.93159 0.92393 0.93545 0.92184 0.89052 0.98793 0.85775 0.93000 0.90478 0.92141 0.91432 0.90896 0.89350 0.91279 0.93161 0.89687 0.93676 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.94 8.58 37.16 0.32 -2.62 16 2 C 0.04 0.76 5.13 -3.82 -0.02 0.74 16 3 N -0.50 -10.13 4.38 -224.82 -0.98 -11.11 16 4 C 0.08 1.89 4.06 -3.82 -0.02 1.87 16 5 C 0.07 1.68 1.50 -155.66 -0.23 1.45 16 6 C -0.47 -12.51 8.89 -34.44 -0.31 -12.82 16 7 H 0.05 1.49 7.84 -52.49 -0.41 1.08 16 8 C 0.08 2.21 5.23 -17.82 -0.09 2.11 16 9 N -0.88 -23.65 9.97 55.43 0.55 -23.09 16 10 Si 0.89 21.47 29.56 -169.99 -5.02 16.44 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C -0.20 -4.60 9.93 -26.73 -0.27 -4.87 16 15 C -0.22 -4.64 7.82 -26.73 -0.21 -4.85 16 16 C 0.06 1.01 2.02 -66.18 -0.13 0.88 16 17 H 0.04 0.69 7.05 -51.93 -0.37 0.33 16 18 C -0.15 -2.26 5.49 -24.72 -0.14 -2.40 16 19 C 0.05 0.70 7.72 38.21 0.29 0.99 16 20 O -0.38 -7.35 11.52 -35.23 -0.41 -7.76 16 21 C 0.05 0.90 6.86 37.73 0.26 1.15 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.98 5.71 -51.93 -0.30 0.68 16 24 H 0.05 0.67 6.64 -51.93 -0.34 0.32 16 25 H 0.06 0.99 6.46 -51.93 -0.34 0.66 16 26 H 0.09 1.78 5.08 -51.93 -0.26 1.51 16 27 H -0.01 -0.13 6.10 -51.93 -0.32 -0.44 16 28 H 0.12 3.09 4.28 -51.93 -0.22 2.87 16 29 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 30 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.31 6.26 -51.93 -0.32 0.99 16 33 H 0.07 1.54 8.14 -51.92 -0.42 1.12 16 34 H 0.09 1.44 7.12 -51.93 -0.37 1.07 16 35 H 0.07 0.88 7.99 -51.93 -0.42 0.47 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.13 2.92 6.05 -51.93 -0.31 2.60 16 LS Contribution 291.89 15.07 4.40 4.40 Total: -1.00 -27.18 291.89 -8.08 -35.26 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.08 Total: 4.22 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -0.54 Total: -18.35 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: -0.43 Total: -34.21 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.41 Total: -7.76 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.18 -8.08 -35.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389731097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.907 kcal (2) G-P(sol) polarization free energy of solvation -27.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds