Wall clock time and date at job start Mon Mar 30 2020 04:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47175 * 2 1 4 4 C 1.46901 * 111.00478 * 64.87942 * 3 2 1 5 5 C 1.52997 * 109.46923 * 64.57996 * 4 3 2 6 6 C 1.50703 * 115.55130 * 64.24698 * 5 4 3 7 7 H 1.08002 * 120.00031 * 219.75988 * 6 5 4 8 8 C 1.37876 * 119.99571 * 39.76260 * 6 5 4 9 9 N 1.31505 * 120.00491 * 11.68156 * 8 6 5 10 10 Si 1.86801 * 119.99448 * 191.95796 * 8 6 5 11 11 H 1.48505 * 109.47117 * 274.72236 * 10 8 6 12 12 H 1.48492 * 109.47448 * 34.72503 * 10 8 6 13 13 H 1.48508 * 109.47097 * 154.72729 * 10 8 6 14 14 C 1.52998 * 117.51583 * 209.95095 * 5 4 3 15 15 C 1.52995 * 60.00125 * 107.47971 * 14 5 4 16 16 C 1.46899 * 110.99759 * 300.92245 * 3 2 1 17 17 H 1.09004 * 110.43615 * 70.37686 * 16 3 2 18 18 C 1.54816 * 110.49283 * 307.69200 * 16 3 2 19 19 C 1.54990 * 102.09300 * 220.44369 * 18 16 3 20 20 O 1.44384 * 103.49403 * 37.01905 * 19 18 16 21 21 C 1.43740 * 106.97396 * 319.94374 * 20 19 18 22 22 H 1.08992 * 109.47245 * 184.71222 * 1 2 3 23 23 H 1.09005 * 109.46993 * 304.71987 * 1 2 3 24 24 H 1.09006 * 109.46667 * 64.71211 * 1 2 3 25 25 H 1.08996 * 109.46929 * 239.99779 * 2 1 3 26 26 H 1.08997 * 109.46773 * 119.99237 * 2 1 3 27 27 H 1.08999 * 109.46625 * 304.58092 * 4 3 2 28 28 H 1.08996 * 109.46730 * 184.57841 * 4 3 2 29 29 H 0.97001 * 120.00495 * 174.87325 * 9 8 6 30 30 H 1.09005 * 117.49587 * 214.97022 * 14 5 4 31 31 H 1.09004 * 117.49909 * 359.97438 * 14 5 4 32 32 H 1.09004 * 117.50225 * 252.50849 * 15 14 5 33 33 H 1.09008 * 117.52022 * 107.48226 * 15 14 5 34 34 H 1.09001 * 110.90189 * 338.63747 * 18 16 3 35 35 H 1.08990 * 110.90757 * 102.24060 * 18 16 3 36 36 H 1.09003 * 110.61928 * 278.51620 * 19 18 16 37 37 H 1.09003 * 110.75428 * 155.58333 * 19 18 16 38 38 H 1.09004 * 109.87744 * 267.08957 * 21 20 19 39 39 H 1.08997 * 110.00524 * 146.00889 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6463 2.0755 1.2417 5 6 2.3474 1.4084 2.4268 6 6 3.8517 1.4981 2.4266 7 1 4.4433 0.6496 2.7372 8 6 4.4727 2.6635 2.0299 9 7 3.7688 3.7632 1.8732 10 14 6.3126 2.6783 1.7077 11 1 7.0370 2.9016 2.9847 12 1 6.7239 1.3751 1.1266 13 1 6.6397 3.7701 0.7557 14 6 1.6374 1.4479 3.7815 15 6 1.7156 0.1368 2.9967 16 6 1.5307 2.1162 -1.1765 17 1 0.4596 2.2999 -1.0924 18 6 1.8486 1.3318 -2.4729 19 6 2.2802 2.4637 -3.4397 20 8 3.0074 3.3751 -2.5881 21 6 2.2944 3.4444 -1.3419 22 1 -0.3633 -1.0241 0.0844 23 1 -0.3633 0.5853 0.8447 24 1 -0.3633 0.4390 -0.9293 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.5666 2.0178 1.3788 28 1 1.9497 3.1206 1.1814 29 1 4.2150 4.5995 1.6669 30 1 2.2585 1.5388 4.6727 31 1 0.6709 1.9495 3.8288 32 1 0.8003 -0.2243 2.5276 33 1 2.3880 -0.6351 3.3712 34 1 2.6639 0.6267 -2.3108 35 1 0.9614 0.8196 -2.8450 36 1 1.4073 2.9544 -3.8703 37 1 2.9270 2.0743 -4.2260 38 1 1.5905 4.2764 -1.3634 39 1 2.9958 3.5738 -0.5177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389731097.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:48 Heat of formation + Delta-G solvation = -22.988379 kcal Electronic energy + Delta-G solvation = -18787.385333 eV Core-core repulsion = 16116.593135 eV Total energy + Delta-G solvation = -2670.792198 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79433 -38.99741 -36.62914 -34.07570 -32.04747 -31.27271 -29.03312 -27.42928 -26.46206 -23.72404 -23.30773 -22.76079 -20.93923 -20.20292 -17.95756 -17.70837 -17.17910 -16.57234 -15.97915 -15.82253 -15.63437 -15.32428 -14.77040 -14.37499 -13.89057 -13.72303 -13.30321 -13.00673 -12.82244 -12.74323 -12.65373 -12.39636 -12.21671 -12.09322 -12.05116 -11.90617 -11.66656 -11.55429 -11.02768 -10.87796 -10.51825 -10.36493 -9.84122 -8.74984 -7.93770 -5.98972 1.42135 1.49366 1.54893 2.49960 3.01424 3.17988 3.29378 3.66888 3.78876 4.06628 4.22141 4.30098 4.34590 4.38654 4.45604 4.49180 4.59357 4.70471 4.76867 4.78529 4.87180 4.88568 4.95401 4.98127 5.04565 5.13702 5.21068 5.21282 5.26052 5.47968 5.51722 5.60158 5.70133 6.01724 6.16316 6.45976 6.62648 6.71761 6.97941 7.61472 9.06018 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.012702 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.109332 B = 2203.852341 C = 3266.891622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.042 3.958 3 N -0.517 5.517 4 C 0.098 3.902 5 C 0.044 3.956 6 C -0.486 4.486 7 H 0.040 0.960 8 C 0.050 3.950 9 N -0.893 5.893 10 Si 0.933 3.067 11 H -0.281 1.281 12 H -0.277 1.277 13 H -0.289 1.289 14 C -0.209 4.209 15 C -0.192 4.192 16 C 0.057 3.943 17 H 0.052 0.948 18 C -0.139 4.139 19 C 0.043 3.957 20 O -0.406 6.406 21 C 0.046 3.954 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.000 1.000 28 H 0.097 0.903 29 H 0.257 0.743 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 -4.628 -8.315 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.085 4.085 3 N -0.241 5.241 4 C -0.030 4.030 5 C 0.043 3.957 6 C -0.523 4.523 7 H 0.058 0.942 8 C -0.150 4.150 9 N -0.532 5.532 10 Si 0.761 3.239 11 H -0.207 1.207 12 H -0.203 1.203 13 H -0.215 1.215 14 C -0.247 4.247 15 C -0.229 4.229 16 C -0.052 4.052 17 H 0.069 0.931 18 C -0.176 4.176 19 C -0.034 4.034 20 O -0.325 6.325 21 C -0.031 4.031 22 H 0.090 0.910 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.018 0.982 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.071 0.929 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.568 -4.340 -8.521 11.601 hybrid contribution 0.034 0.198 0.478 0.519 sum -6.534 -4.142 -8.043 11.159 Atomic orbital electron populations 1.22349 0.97729 1.02444 1.01330 1.22310 0.93165 0.90433 1.02621 1.62054 1.59087 1.01911 1.01002 1.21669 0.92374 1.00896 0.88019 1.18931 0.92807 0.94321 0.89596 1.20502 0.90300 0.98191 1.43307 0.94221 1.25204 1.00131 0.95407 0.94257 1.69805 1.35508 0.98849 1.49022 0.85975 0.83023 0.77339 0.77589 1.20704 1.20262 1.21513 1.22953 1.01148 1.02136 0.98499 1.22944 1.02217 0.91305 1.06395 1.22919 0.96384 0.93803 0.92118 0.93062 1.23204 1.02897 0.98364 0.93172 1.23731 0.96955 0.89085 0.93597 1.88831 1.51060 1.66607 1.26031 1.23335 0.96411 0.96418 0.86968 0.90984 0.93932 0.92152 0.90677 0.90987 0.98214 0.88517 0.93339 0.91649 0.90993 0.89211 0.91059 0.90621 0.87972 0.90744 0.87644 0.92905 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.95 8.58 71.98 0.62 -4.33 16 2 C 0.04 1.42 5.13 86.30 0.44 1.87 16 3 N -0.52 -20.64 4.38 -865.19 -3.79 -24.43 16 4 C 0.10 4.37 4.06 86.30 0.35 4.72 16 5 C 0.04 2.11 1.50 -52.93 -0.08 2.03 16 6 C -0.49 -26.30 8.89 25.60 0.23 -26.08 16 7 H 0.04 2.20 7.84 -2.91 -0.02 2.18 16 8 C 0.05 2.73 5.23 84.66 0.44 3.17 16 9 N -0.89 -48.88 9.97 21.45 0.21 -48.66 16 10 Si 0.93 44.76 29.56 68.60 2.03 46.79 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 C -0.21 -9.35 9.93 30.59 0.30 -9.05 16 15 C -0.19 -7.90 7.82 30.59 0.24 -7.66 16 16 C 0.06 1.95 2.02 45.91 0.09 2.04 16 17 H 0.05 1.65 7.05 -2.38 -0.02 1.63 16 18 C -0.14 -3.79 5.49 31.90 0.18 -3.62 16 19 C 0.04 1.14 7.72 72.66 0.56 1.70 16 20 O -0.41 -15.43 11.52 -148.98 -1.72 -17.15 16 21 C 0.05 1.80 6.86 72.35 0.50 2.30 16 22 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.04 1.30 5.71 -2.38 -0.01 1.29 16 24 H 0.06 1.49 6.64 -2.38 -0.02 1.47 16 25 H 0.07 2.27 6.46 -2.39 -0.02 2.26 16 26 H 0.07 2.68 5.08 -2.39 -0.01 2.67 16 27 H 0.00 0.00 6.10 -2.39 -0.01 -0.01 16 28 H 0.10 4.91 4.28 -2.39 -0.01 4.90 16 29 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 30 H 0.06 3.03 8.14 -2.38 -0.02 3.01 16 31 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 32 H 0.09 3.28 6.26 -2.38 -0.01 3.27 16 33 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 34 H 0.08 2.28 7.12 -2.39 -0.02 2.26 16 35 H 0.10 2.13 7.99 -2.39 -0.02 2.11 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 4.08 6.05 -2.39 -0.01 4.06 16 Total: -1.00 -58.78 291.89 1.63 -57.15 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.03 Total: 19.20 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.87 Total: -32.90 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -3.58 Total: -73.09 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.72 Total: -17.15 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -58.78 1.63 -57.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389731097.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.157 kcal (2) G-P(sol) polarization free energy of solvation -58.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds