Wall clock time and date at job start Mon Mar 30 2020 03:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.45825 * 2 1 4 4 C 1.54484 * 110.51413 * 122.75675 * 2 1 3 5 5 H 1.09000 * 110.36703 * 23.68029 * 4 2 1 6 6 C 1.53001 * 110.36976 * 261.45627 * 4 2 1 7 7 O 1.44422 * 104.80505 * 142.62234 * 4 2 1 8 8 C 1.44427 * 105.27537 * 319.48626 * 7 4 2 9 9 C 1.54477 * 104.80073 * 40.51365 * 8 7 4 10 10 H 1.09009 * 110.62823 * 94.72377 * 9 8 7 11 11 N 1.46902 * 110.51176 * 217.37156 * 9 8 7 12 12 C 1.46898 * 111.00148 * 277.21157 * 11 9 8 13 13 C 1.52998 * 109.47249 * 184.04757 * 12 11 9 14 14 C 1.50692 * 115.56535 * 269.58409 * 13 12 11 15 15 H 1.07998 * 120.00830 * 141.09939 * 14 13 12 16 16 C 1.37881 * 120.00090 * 321.09585 * 14 13 12 17 17 N 1.31516 * 120.00373 * 168.33525 * 16 14 13 18 18 Si 1.86801 * 119.99814 * 348.33993 * 16 14 13 19 19 H 1.48493 * 109.47474 * 94.29732 * 18 16 14 20 20 H 1.48502 * 109.47192 * 214.30258 * 18 16 14 21 21 H 1.48508 * 109.47099 * 334.29720 * 18 16 14 22 22 C 1.53003 * 117.49473 * 55.27097 * 13 12 11 23 23 C 1.52996 * 60.03266 * 107.50085 * 22 13 12 24 24 H 1.08999 * 109.46694 * 176.26215 * 1 2 3 25 25 H 1.08992 * 109.47057 * 296.25929 * 1 2 3 26 26 H 1.08998 * 109.46792 * 56.26415 * 1 2 3 27 27 H 1.09002 * 109.46971 * 59.99548 * 6 4 2 28 28 H 1.09003 * 109.46899 * 179.97438 * 6 4 2 29 29 H 1.08993 * 109.46831 * 299.99863 * 6 4 2 30 30 H 1.08996 * 110.37238 * 281.67855 * 8 7 4 31 31 H 1.08998 * 110.36663 * 159.34115 * 8 7 4 32 32 H 1.00894 * 111.00061 * 153.25285 * 11 9 8 33 33 H 1.09006 * 109.47245 * 64.04974 * 12 11 9 34 34 H 1.09002 * 109.47211 * 304.05201 * 12 11 9 35 35 H 0.97002 * 119.99945 * 180.02562 * 17 16 14 36 36 H 1.08995 * 117.50176 * 359.97438 * 22 13 12 37 37 H 1.08997 * 117.49660 * 215.00213 * 22 13 12 38 38 H 1.09008 * 117.50163 * 107.47492 * 23 22 13 39 39 H 1.08995 * 117.50001 * 252.47486 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0714 -0.7829 1.2168 5 1 1.3279 -1.4977 1.5693 6 6 2.4576 0.1805 2.3409 7 8 3.2399 -1.4723 0.7218 8 6 2.8757 -1.9415 -0.5947 9 6 2.0714 -0.7798 -1.2191 10 1 2.7201 -0.1440 -1.8218 11 7 0.9631 -1.2993 -2.0314 12 6 1.4247 -1.6712 -3.3755 13 6 0.2286 -2.1113 -4.2219 14 6 -0.0963 -3.5819 -4.1736 15 1 -1.1259 -3.9074 -4.1575 16 6 0.9211 -4.5123 -4.1501 17 7 0.6548 -5.7713 -3.8785 18 14 2.6777 -3.9846 -4.5040 19 1 3.3739 -3.6924 -3.2254 20 1 3.3886 -5.0765 -5.2165 21 1 2.6670 -2.7652 -5.3517 22 6 -0.9407 -1.1335 -4.3547 23 6 -0.0099 -1.3778 -5.5442 24 1 -0.3633 -1.0255 -0.0670 25 1 -0.3633 0.4546 0.9215 26 1 -0.3633 0.5707 -0.8546 27 1 1.5811 0.7515 2.6472 28 1 2.8367 -0.3866 3.1911 29 1 3.2296 0.8628 1.9854 30 1 2.2564 -2.8354 -0.5211 31 1 3.7689 -2.1451 -1.1853 32 1 0.2072 -0.6328 -2.0802 33 1 2.1383 -2.4918 -3.3005 34 1 1.9060 -0.8131 -3.8448 35 1 1.3706 -6.4257 -3.8616 36 1 -0.8580 -0.1769 -3.8387 37 1 -1.9449 -1.5540 -4.4068 38 1 -0.4017 -1.9595 -6.3787 39 1 0.6850 -0.5818 -5.8113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405560446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:20 Heat of formation + Delta-G solvation = -10.298950 kcal Electronic energy + Delta-G solvation = -18211.623853 eV Core-core repulsion = 15541.381910 eV Total energy + Delta-G solvation = -2670.241943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.78764 -37.38631 -34.66338 -32.79877 -32.15950 -30.02338 -27.69106 -26.37532 -24.32755 -24.07107 -21.61097 -21.23455 -19.50667 -19.04403 -16.73262 -15.96190 -15.67142 -15.55882 -15.13116 -14.79826 -14.08724 -13.61970 -13.39889 -12.94218 -12.72772 -12.56047 -12.33970 -12.09082 -11.97464 -11.80769 -11.22413 -11.01086 -10.87184 -10.67715 -10.58028 -10.43224 -10.23706 -9.88313 -9.55242 -9.41073 -9.23661 -8.76880 -8.34993 -7.83301 -6.11223 -4.03377 3.20803 3.36716 3.39193 4.02513 4.38200 4.51285 4.60897 4.70964 4.94096 5.07778 5.30716 5.38426 5.38883 5.43714 5.56346 5.61420 5.67334 5.78326 5.87939 5.90014 5.94819 6.02584 6.07286 6.12188 6.16653 6.21971 6.28464 6.43829 6.45493 6.52601 6.73178 6.99433 7.03278 7.12349 7.61665 7.76171 7.90464 8.52792 8.93455 9.53418 11.01193 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.008417 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.136313 B = 3325.945596 C = 3888.619720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 H 0.078 0.922 4 C 0.076 3.924 5 H 0.072 0.928 6 C -0.144 4.144 7 O -0.378 6.378 8 C 0.053 3.947 9 C 0.053 3.947 10 H 0.047 0.953 11 N -0.661 5.661 12 C 0.084 3.916 13 C 0.017 3.983 14 C -0.472 4.472 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.890 5.890 18 Si 0.886 3.114 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.264 1.264 22 C -0.188 4.188 23 C -0.211 4.211 24 H 0.080 0.920 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.343 0.657 33 H 0.070 0.930 34 H 0.012 0.988 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 12.458 7.774 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 H 0.096 0.904 4 C 0.018 3.982 5 H 0.090 0.910 6 C -0.202 4.202 7 O -0.297 6.297 8 C -0.024 4.024 9 C -0.058 4.058 10 H 0.065 0.935 11 N -0.296 5.296 12 C -0.043 4.043 13 C 0.015 3.985 14 C -0.509 4.509 15 H 0.094 0.906 16 C -0.125 4.125 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.189 1.189 22 C -0.225 4.225 23 C -0.249 4.249 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.087 0.913 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.868 11.596 8.157 14.465 hybrid contribution 0.959 1.111 -0.858 1.700 sum 3.826 12.707 7.299 15.146 Atomic orbital electron populations 1.21741 0.93594 1.03851 1.00978 1.22649 0.97343 0.99233 0.94645 0.90372 1.22996 0.88016 0.93381 0.93760 0.90965 1.21799 1.01865 0.98794 0.97710 1.89074 1.35292 1.74010 1.31315 1.23523 0.99062 0.97157 0.82686 1.22898 0.93425 0.94926 0.94532 0.93469 1.60588 1.08596 1.46235 1.14184 1.22014 0.97401 0.97437 0.87495 1.19342 0.92111 0.94200 0.92806 1.20261 0.94801 0.85891 1.49942 0.90569 1.24947 0.98752 0.94802 0.93997 1.69919 1.33228 1.02344 1.47221 0.86914 0.85325 0.78047 0.77960 1.20754 1.22684 1.18907 1.22674 0.96452 0.99892 1.03498 1.23220 1.03886 1.03807 0.93985 0.90099 0.92769 0.92552 0.91341 0.92049 0.92095 0.90227 0.89841 0.83434 0.91255 0.97045 0.92555 0.91557 0.89780 0.89556 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.82 37.16 0.29 -1.47 16 2 C -0.12 -1.59 3.26 -89.05 -0.29 -1.88 16 3 H 0.08 0.93 7.88 -51.93 -0.41 0.52 16 4 C 0.08 1.04 3.48 -25.95 -0.09 0.95 16 5 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 6 C -0.14 -1.54 9.52 37.16 0.35 -1.18 16 7 O -0.38 -6.32 11.34 -35.23 -0.40 -6.72 16 8 C 0.05 0.94 7.15 37.93 0.27 1.21 16 9 C 0.05 0.87 3.40 -66.14 -0.22 0.64 16 10 H 0.05 0.76 7.88 -51.92 -0.41 0.35 16 11 N -0.66 -12.33 5.42 -105.07 -0.57 -12.90 16 12 C 0.08 1.81 4.39 -3.83 -0.02 1.79 16 13 C 0.02 0.39 1.44 -155.63 -0.22 0.16 16 14 C -0.47 -13.15 9.55 -34.44 -0.33 -13.48 16 15 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 16 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 17 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 18 Si 0.89 21.91 24.34 -169.99 -4.14 17.77 16 19 H -0.28 -6.66 6.73 56.52 0.38 -6.28 16 20 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.26 -6.28 6.80 56.52 0.38 -5.90 16 22 C -0.19 -3.74 9.37 -26.73 -0.25 -3.99 16 23 C -0.21 -4.41 9.88 -26.69 -0.26 -4.67 16 24 H 0.08 1.15 7.54 -51.93 -0.39 0.76 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.66 7.09 -51.93 -0.37 0.29 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.57 8.06 -51.93 -0.42 1.15 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.34 5.81 4.75 -39.29 -0.19 5.62 16 33 H 0.07 1.63 2.42 -51.93 -0.13 1.50 16 34 H 0.01 0.23 7.74 -51.93 -0.40 -0.17 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.07 1.15 7.39 -51.93 -0.38 0.76 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.09 1.84 8.14 -51.92 -0.42 1.41 16 39 H 0.06 1.24 8.04 -51.93 -0.42 0.83 16 LS Contribution 300.41 15.07 4.53 4.53 Total: -1.00 -29.62 300.41 -7.15 -36.77 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.48 Total: 6.53 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.87 Total: -19.80 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.20 Total: -39.08 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.40 Total: -6.72 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.14 Total: 17.77 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.62 -7.15 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405560446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.469 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds