Wall clock time and date at job start Mon Mar 30 2020 03:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.45825 * 2 1 4 4 C 1.54484 * 110.51413 * 122.75675 * 2 1 3 5 5 H 1.09000 * 110.36703 * 23.68029 * 4 2 1 6 6 C 1.53001 * 110.36976 * 261.45627 * 4 2 1 7 7 O 1.44422 * 104.80505 * 142.62234 * 4 2 1 8 8 C 1.44427 * 105.27537 * 319.48626 * 7 4 2 9 9 C 1.54477 * 104.80073 * 40.51365 * 8 7 4 10 10 H 1.09009 * 110.62823 * 94.72377 * 9 8 7 11 11 N 1.46902 * 110.51176 * 217.37156 * 9 8 7 12 12 C 1.46898 * 111.00148 * 277.21157 * 11 9 8 13 13 C 1.52998 * 109.47249 * 184.04757 * 12 11 9 14 14 C 1.50692 * 115.56535 * 269.58409 * 13 12 11 15 15 H 1.07998 * 120.00830 * 141.09939 * 14 13 12 16 16 C 1.37881 * 120.00090 * 321.09585 * 14 13 12 17 17 N 1.31516 * 120.00373 * 168.33525 * 16 14 13 18 18 Si 1.86801 * 119.99814 * 348.33993 * 16 14 13 19 19 H 1.48493 * 109.47474 * 94.29732 * 18 16 14 20 20 H 1.48502 * 109.47192 * 214.30258 * 18 16 14 21 21 H 1.48508 * 109.47099 * 334.29720 * 18 16 14 22 22 C 1.53003 * 117.49473 * 55.27097 * 13 12 11 23 23 C 1.52996 * 60.03266 * 107.50085 * 22 13 12 24 24 H 1.08999 * 109.46694 * 176.26215 * 1 2 3 25 25 H 1.08992 * 109.47057 * 296.25929 * 1 2 3 26 26 H 1.08998 * 109.46792 * 56.26415 * 1 2 3 27 27 H 1.09002 * 109.46971 * 59.99548 * 6 4 2 28 28 H 1.09003 * 109.46899 * 179.97438 * 6 4 2 29 29 H 1.08993 * 109.46831 * 299.99863 * 6 4 2 30 30 H 1.08996 * 110.37238 * 281.67855 * 8 7 4 31 31 H 1.08998 * 110.36663 * 159.34115 * 8 7 4 32 32 H 1.00894 * 111.00061 * 153.25285 * 11 9 8 33 33 H 1.09006 * 109.47245 * 64.04974 * 12 11 9 34 34 H 1.09002 * 109.47211 * 304.05201 * 12 11 9 35 35 H 0.97002 * 119.99945 * 180.02562 * 17 16 14 36 36 H 1.08995 * 117.50176 * 359.97438 * 22 13 12 37 37 H 1.08997 * 117.49660 * 215.00213 * 22 13 12 38 38 H 1.09008 * 117.50163 * 107.47492 * 23 22 13 39 39 H 1.08995 * 117.50001 * 252.47486 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0714 -0.7829 1.2168 5 1 1.3279 -1.4977 1.5693 6 6 2.4576 0.1805 2.3409 7 8 3.2399 -1.4723 0.7218 8 6 2.8757 -1.9415 -0.5947 9 6 2.0714 -0.7798 -1.2191 10 1 2.7201 -0.1440 -1.8218 11 7 0.9631 -1.2993 -2.0314 12 6 1.4247 -1.6712 -3.3755 13 6 0.2286 -2.1113 -4.2219 14 6 -0.0963 -3.5819 -4.1736 15 1 -1.1259 -3.9074 -4.1575 16 6 0.9211 -4.5123 -4.1501 17 7 0.6548 -5.7713 -3.8785 18 14 2.6777 -3.9846 -4.5040 19 1 3.3739 -3.6924 -3.2254 20 1 3.3886 -5.0765 -5.2165 21 1 2.6670 -2.7652 -5.3517 22 6 -0.9407 -1.1335 -4.3547 23 6 -0.0099 -1.3778 -5.5442 24 1 -0.3633 -1.0255 -0.0670 25 1 -0.3633 0.4546 0.9215 26 1 -0.3633 0.5707 -0.8546 27 1 1.5811 0.7515 2.6472 28 1 2.8367 -0.3866 3.1911 29 1 3.2296 0.8628 1.9854 30 1 2.2564 -2.8354 -0.5211 31 1 3.7689 -2.1451 -1.1853 32 1 0.2072 -0.6328 -2.0802 33 1 2.1383 -2.4918 -3.3005 34 1 1.9060 -0.8131 -3.8448 35 1 1.3706 -6.4257 -3.8616 36 1 -0.8580 -0.1769 -3.8387 37 1 -1.9449 -1.5540 -4.4068 38 1 -0.4017 -1.9595 -6.3787 39 1 0.6850 -0.5818 -5.8113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405560446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:19 Heat of formation + Delta-G solvation = -30.616903 kcal Electronic energy + Delta-G solvation = -18212.504906 eV Core-core repulsion = 15541.381910 eV Total energy + Delta-G solvation = -2671.122996 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01653 -39.03759 -36.05368 -34.30398 -33.94599 -31.18564 -28.90462 -28.26449 -25.97471 -25.25646 -23.13229 -22.48668 -20.99555 -20.65165 -18.54418 -17.49781 -17.04916 -16.86078 -16.47877 -16.39023 -15.44546 -15.26121 -14.96611 -14.63321 -14.17407 -13.85463 -13.60230 -13.27371 -13.25159 -12.94900 -12.80378 -12.42245 -12.28105 -12.19007 -11.98402 -11.78925 -11.73366 -11.48709 -11.23235 -11.17323 -10.78519 -10.55636 -10.34109 -9.26855 -8.30350 -6.25554 1.24998 1.34876 1.45083 2.31702 2.77445 2.92068 3.24527 3.45232 3.57156 3.69532 3.93619 4.07455 4.20306 4.20773 4.31545 4.40748 4.44680 4.49170 4.53402 4.61824 4.66380 4.73486 4.82372 4.89548 4.92489 4.99560 5.06332 5.08861 5.12164 5.31094 5.33508 5.45839 5.50764 5.72293 5.79480 6.16808 6.30880 6.58234 6.73583 7.34321 8.86195 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.008417 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.136313 B = 3325.945596 C = 3888.619720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.103 0.897 4 C 0.066 3.934 5 H 0.063 0.937 6 C -0.138 4.138 7 O -0.391 6.391 8 C 0.052 3.948 9 C 0.052 3.948 10 H 0.059 0.941 11 N -0.672 5.672 12 C 0.090 3.910 13 C -0.018 4.018 14 C -0.475 4.475 15 H 0.030 0.970 16 C 0.021 3.979 17 N -0.944 5.944 18 Si 0.949 3.051 19 H -0.271 1.271 20 H -0.306 1.306 21 H -0.242 1.242 22 C -0.165 4.165 23 C -0.199 4.199 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.354 0.646 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 16.176 8.196 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.121 0.879 4 C 0.009 3.991 5 H 0.081 0.919 6 C -0.195 4.195 7 O -0.310 6.310 8 C -0.026 4.026 9 C -0.059 4.059 10 H 0.077 0.923 11 N -0.309 5.309 12 C -0.038 4.038 13 C -0.019 4.019 14 C -0.513 4.513 15 H 0.048 0.952 16 C -0.177 4.177 17 N -0.583 5.583 18 Si 0.778 3.222 19 H -0.199 1.199 20 H -0.234 1.234 21 H -0.166 1.166 22 C -0.203 4.203 23 C -0.238 4.238 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.178 0.822 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.641 15.354 8.582 17.962 hybrid contribution 0.574 -0.063 -0.937 1.100 sum 4.215 15.291 7.645 17.608 Atomic orbital electron populations 1.21708 0.92767 1.02587 1.02804 1.22662 0.97954 0.99746 0.92503 0.87875 1.23269 0.87070 0.93745 0.95034 0.91925 1.21801 1.03137 0.98208 0.96370 1.89064 1.36723 1.74399 1.30795 1.23386 0.98587 0.96925 0.83658 1.22942 0.92890 0.94587 0.95444 0.92330 1.60463 1.09811 1.47445 1.13162 1.21802 0.95987 0.97418 0.88638 1.19276 0.95121 0.91939 0.95567 1.20478 0.92674 0.89176 1.48926 0.95185 1.25753 1.03253 0.94616 0.94053 1.70069 1.34572 1.03829 1.49880 0.85883 0.80016 0.78017 0.78292 1.19856 1.23440 1.16568 1.22728 0.94950 1.00120 1.02455 1.23219 1.04200 1.03492 0.92850 0.92780 0.90238 0.91536 0.88822 0.92018 0.91611 0.93397 0.90340 0.82194 0.93608 0.94709 0.92693 0.87853 0.90718 0.90657 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 7.82 71.98 0.56 -2.44 16 2 C -0.11 -2.56 3.26 -9.78 -0.03 -2.59 16 3 H 0.10 1.95 7.88 -2.39 -0.02 1.93 16 4 C 0.07 1.67 3.48 31.10 0.11 1.78 16 5 H 0.06 1.68 7.87 -2.39 -0.02 1.66 16 6 C -0.14 -2.49 9.52 71.98 0.69 -1.80 16 7 O -0.39 -12.66 11.34 -148.98 -1.69 -14.35 16 8 C 0.05 1.83 7.15 72.48 0.52 2.35 16 9 C 0.05 1.58 3.40 45.93 0.16 1.73 16 10 H 0.06 1.68 7.88 -2.38 -0.02 1.66 16 11 N -0.67 -23.75 5.42 -486.32 -2.64 -26.39 16 12 C 0.09 3.63 4.39 86.30 0.38 4.01 16 13 C -0.02 -0.80 1.44 -52.90 -0.08 -0.88 16 14 C -0.48 -27.23 9.55 25.60 0.24 -26.99 16 15 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 16 C 0.02 1.21 5.42 84.66 0.46 1.67 16 17 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 18 Si 0.95 45.90 24.34 68.60 1.67 47.57 16 19 H -0.27 -12.59 6.73 99.48 0.67 -11.92 16 20 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 21 H -0.24 -10.70 6.80 99.48 0.68 -10.02 16 22 C -0.17 -6.13 9.37 30.59 0.29 -5.84 16 23 C -0.20 -7.76 9.88 30.62 0.30 -7.46 16 24 H 0.05 1.45 7.54 -2.39 -0.02 1.44 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.28 7.09 -2.39 -0.02 1.27 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.95 8.06 -2.39 -0.02 1.94 16 31 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.35 10.90 4.75 -89.70 -0.43 10.48 16 33 H 0.05 2.08 2.42 -2.38 -0.01 2.08 16 34 H 0.03 1.25 7.74 -2.39 -0.02 1.23 16 35 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.10 3.08 7.39 -2.39 -0.02 3.06 16 37 H 0.07 2.90 8.14 -2.39 -0.02 2.89 16 38 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 39 H 0.09 3.15 8.04 -2.39 -0.02 3.13 16 Total: -1.00 -66.94 300.41 1.76 -65.18 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.53 Total: 24.01 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.60 Total: -36.45 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -2.34 Total: -85.96 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.69 Total: -14.35 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.67 Total: 47.57 kcal Total: -66.94 1.76 -65.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405560446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.564 kcal (2) G-P(sol) polarization free energy of solvation -66.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds