Wall clock time and date at job start Mon Mar 30 2020 03:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.33359 * 2 1 4 4 O 1.44427 * 110.46476 * 237.68390 * 2 1 3 5 5 C 1.44432 * 105.27282 * 200.61279 * 4 2 1 6 6 C 1.54474 * 104.80532 * 40.51376 * 5 4 2 7 7 H 1.08998 * 110.63010 * 217.32118 * 6 5 4 8 8 N 1.46895 * 110.51219 * 94.66466 * 6 5 4 9 9 C 1.46900 * 110.99995 * 94.10900 * 8 6 5 10 10 C 1.52999 * 109.47113 * 184.80697 * 9 8 6 11 11 C 1.50706 * 115.55008 * 299.40314 * 10 9 8 12 12 H 1.07998 * 119.99732 * 95.17522 * 11 10 9 13 13 C 1.37872 * 120.00221 * 275.17599 * 11 10 9 14 14 N 1.31519 * 120.00091 * 5.72400 * 13 11 10 15 15 Si 1.86800 * 120.00248 * 185.72034 * 13 11 10 16 16 H 1.48495 * 109.47449 * 270.00323 * 15 13 11 17 17 H 1.48501 * 109.47091 * 149.99727 * 15 13 11 18 18 H 1.48503 * 109.46919 * 30.00302 * 15 13 11 19 19 C 1.53001 * 117.50195 * 85.07687 * 10 9 8 20 20 C 1.53000 * 117.49830 * 153.73753 * 10 9 8 21 21 C 1.54480 * 110.36947 * 122.25151 * 2 1 3 22 22 H 1.08999 * 110.50938 * 261.56300 * 21 2 1 23 23 C 1.53000 * 110.63023 * 24.21470 * 21 2 1 24 24 H 1.09002 * 109.47063 * 297.75365 * 1 2 3 25 25 H 1.09000 * 109.46766 * 57.75152 * 1 2 3 26 26 H 1.08999 * 109.47340 * 177.74618 * 1 2 3 27 27 H 1.08994 * 110.36892 * 281.67863 * 5 4 2 28 28 H 1.08999 * 110.36851 * 159.34849 * 5 4 2 29 29 H 1.00903 * 111.00251 * 330.15705 * 8 6 5 30 30 H 1.08997 * 109.47387 * 64.80695 * 9 8 6 31 31 H 1.09001 * 109.46831 * 304.80453 * 9 8 6 32 32 H 0.97005 * 119.99619 * 355.12100 * 14 13 11 33 33 H 1.08996 * 117.49782 * 215.00374 * 19 10 9 34 34 H 1.08998 * 117.49463 * 0.02562 * 19 10 9 35 35 H 1.09002 * 117.50199 * 359.97367 * 20 10 9 36 36 H 1.08999 * 117.49783 * 144.99757 * 20 10 9 37 37 H 1.09002 * 109.47351 * 178.85766 * 23 21 2 38 38 H 1.08991 * 109.47421 * 298.86557 * 23 21 2 39 39 H 1.09000 * 109.46766 * 58.86166 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 8 2.0350 -0.7234 -1.1435 5 6 3.3898 -1.0847 -0.7972 6 6 3.3194 -1.5028 0.6882 7 1 4.2111 -1.1746 1.2222 8 7 3.1567 -2.9579 0.8062 9 6 4.4571 -3.6216 0.9686 10 6 4.2590 -5.1388 0.9676 11 6 3.3795 -5.6801 2.0651 12 1 2.3300 -5.8546 1.8794 13 6 3.9146 -5.9527 3.3062 14 7 5.1640 -5.6359 3.5676 15 14 2.8651 -6.7717 4.6165 16 1 2.1729 -5.7310 5.4184 17 1 3.7307 -7.5875 5.5056 18 1 1.8572 -7.6480 3.9672 19 6 4.2105 -5.8441 -0.3893 20 6 5.4360 -6.0046 0.5138 21 6 2.0677 -0.7728 1.2248 22 1 2.3411 -0.0820 2.0223 23 6 1.0311 -1.7817 1.7232 24 1 -0.3633 0.4786 0.9095 25 1 -0.3633 0.5484 -0.8692 26 1 -0.3634 -1.0268 -0.0404 27 1 4.0537 -0.2290 -0.9195 28 1 3.7284 -1.9195 -1.4108 29 1 2.6566 -3.3314 0.0133 30 1 4.9064 -3.3145 1.9129 31 1 5.1138 -3.3404 0.1453 32 1 5.7299 -5.2758 2.8667 33 1 3.5424 -6.6996 -0.4881 34 1 4.3201 -5.2273 -1.2812 35 1 6.3514 -5.4933 0.2154 36 1 5.5742 -6.9657 1.0089 37 1 1.4370 -2.3298 2.5735 38 1 0.1279 -1.2538 2.0287 39 1 0.7900 -2.4806 0.9222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405560448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:24 Heat of formation + Delta-G solvation = -44.097228 kcal Electronic energy + Delta-G solvation = -18126.569508 eV Core-core repulsion = 15454.861962 eV Total energy + Delta-G solvation = -2671.707546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02182 -38.93387 -35.80250 -34.29571 -33.82690 -30.92595 -28.43917 -27.07390 -26.00467 -25.79961 -23.12455 -22.19903 -21.28351 -20.44132 -18.67862 -17.70913 -16.64077 -16.41504 -16.27708 -15.62852 -15.50967 -15.05845 -14.95528 -14.39183 -14.20560 -13.92807 -13.33815 -13.26683 -12.95319 -12.75224 -12.67120 -12.60188 -12.23643 -12.08016 -11.97028 -11.93600 -11.76180 -11.39331 -11.25625 -10.74549 -10.42597 -10.36848 -10.20023 -9.05225 -8.43288 -6.12569 1.55540 1.63406 1.80001 2.62971 2.92136 3.08156 3.33202 3.45590 3.66586 3.82748 4.06014 4.07918 4.20266 4.29261 4.37005 4.47403 4.48753 4.53357 4.56242 4.61911 4.73467 4.78025 4.81988 4.92233 4.93138 5.02387 5.07244 5.20097 5.31007 5.35874 5.43264 5.53702 5.64683 5.89612 6.22762 6.33918 6.41124 6.59636 6.83961 7.64649 8.97924 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.007474 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.618043 B = 3745.544137 C = 4394.529687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 H 0.081 0.919 4 O -0.389 6.389 5 C 0.025 3.975 6 C 0.051 3.949 7 H 0.080 0.920 8 N -0.656 5.656 9 C 0.119 3.881 10 C 0.000 4.000 11 C -0.549 4.549 12 H 0.037 0.963 13 C -0.022 4.022 14 N -0.941 5.941 15 Si 1.107 2.893 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.177 4.177 20 C -0.184 4.184 21 C -0.110 4.110 22 H 0.090 0.910 23 C -0.109 4.109 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.337 0.663 30 H 0.036 0.964 31 H 0.013 0.987 32 H 0.264 0.736 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 11.347 -6.727 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 H 0.099 0.901 4 O -0.309 6.309 5 C -0.054 4.054 6 C -0.060 4.060 7 H 0.098 0.902 8 N -0.285 5.285 9 C -0.011 4.011 10 C -0.001 4.001 11 C -0.587 4.587 12 H 0.055 0.945 13 C -0.220 4.220 14 N -0.578 5.578 15 Si 0.932 3.068 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.214 4.214 20 C -0.222 4.222 21 C -0.129 4.129 22 H 0.108 0.892 23 C -0.166 4.166 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.156 0.844 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.103 10.807 -4.668 13.260 hybrid contribution 0.965 0.285 -2.220 2.437 sum -5.137 11.092 -6.888 14.031 Atomic orbital electron populations 1.21863 0.92271 1.02853 1.03057 1.23207 0.96291 0.95081 0.83994 0.90130 1.89097 1.27243 1.75218 1.39330 1.24089 0.84938 1.00495 0.95855 1.23062 0.98707 0.89201 0.95003 0.90167 1.60290 1.19032 1.01713 1.47509 1.21302 0.89259 0.93546 0.96970 1.19256 0.97283 0.90109 0.93471 1.21338 0.95011 1.44690 0.97656 0.94489 1.26803 0.98430 0.95848 1.00963 1.70807 1.08065 1.42952 1.36012 0.83039 0.73953 0.76041 0.73808 1.20618 1.21390 1.20226 1.22880 1.00793 1.03416 0.94342 1.22688 0.92537 1.01707 1.05275 1.22581 0.95098 0.97253 0.98009 0.89180 1.21379 0.97170 0.97656 1.00422 0.89391 0.91742 0.92385 0.90568 0.89993 0.84371 0.94578 0.96905 0.92576 0.90640 0.89100 0.90066 0.92244 0.94481 0.91777 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.38 71.98 0.60 -2.28 16 2 C 0.07 1.67 3.83 31.10 0.12 1.79 16 3 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 4 O -0.39 -11.07 11.35 -148.98 -1.69 -12.76 16 5 C 0.02 0.66 7.07 72.48 0.51 1.18 16 6 C 0.05 1.57 3.47 45.93 0.16 1.73 16 7 H 0.08 2.48 7.81 -2.39 -0.02 2.46 16 8 N -0.66 -24.86 4.39 -486.35 -2.14 -26.99 16 9 C 0.12 5.08 5.30 86.30 0.46 5.54 16 10 C 0.00 -0.02 1.05 -52.93 -0.06 -0.08 16 11 C -0.55 -30.25 8.65 25.60 0.22 -30.03 16 12 H 0.04 2.10 7.82 -2.91 -0.02 2.08 16 13 C -0.02 -1.23 5.39 84.65 0.46 -0.77 16 14 N -0.94 -56.35 13.57 21.45 0.29 -56.06 16 15 Si 1.11 51.35 29.91 68.60 2.05 53.40 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 17 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 19 C -0.18 -7.40 9.95 30.62 0.30 -7.10 16 20 C -0.18 -8.41 8.65 30.62 0.26 -8.14 16 21 C -0.11 -2.95 3.62 -9.78 -0.04 -2.99 16 22 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 23 C -0.11 -3.28 6.98 71.98 0.50 -2.77 16 24 H 0.09 1.42 7.75 -2.39 -0.02 1.40 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.32 6.68 -2.39 -0.02 1.31 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.08 2.27 7.96 -2.39 -0.02 2.25 16 29 H 0.34 12.83 7.99 -89.69 -0.72 12.11 16 30 H 0.04 1.76 7.91 -2.39 -0.02 1.74 16 31 H 0.01 0.50 8.10 -2.39 -0.02 0.48 16 32 H 0.26 15.73 6.21 -92.70 -0.58 15.16 16 33 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.04 1.35 8.02 -2.39 -0.02 1.33 16 38 H 0.06 1.57 6.78 -2.39 -0.02 1.55 16 39 H 0.04 1.45 7.03 -2.39 -0.02 1.43 16 Total: -1.00 -61.95 308.07 2.51 -59.44 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.49 Total: 26.90 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 3.51 Total: -43.93 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.84 Total: -83.05 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.69 Total: -12.76 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 2.05 Total: 53.40 kcal Total: -61.95 2.51 -59.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405560448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.341 kcal (2) G-P(sol) polarization free energy of solvation -61.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds