Wall clock time and date at job start Mon Mar 30 2020 03:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47570 * 2 1 4 4 C 1.53007 * 109.46796 * 239.99674 * 2 1 3 5 5 C 1.50701 * 109.46597 * 65.57768 * 4 2 1 6 6 H 1.07992 * 120.00428 * 355.26376 * 5 4 2 7 7 C 1.37886 * 119.99607 * 175.26412 * 5 4 2 8 8 N 1.31508 * 119.99742 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99803 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46953 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47098 * 119.99833 * 9 7 5 12 12 H 1.48492 * 109.46828 * 239.99984 * 9 7 5 13 13 N 1.46899 * 109.47014 * 120.00162 * 2 1 3 14 14 C 1.48507 * 111.00109 * 181.22819 * 13 2 1 15 15 C 1.54260 * 104.74421 * 159.32970 * 14 13 2 16 16 H 1.09008 * 113.16980 * 99.36068 * 15 14 13 17 17 C 1.55973 * 108.89328 * 226.20060 * 15 14 13 18 18 O 1.44387 * 105.15119 * 87.23819 * 17 15 14 19 19 C 1.44385 * 105.25755 * 40.56540 * 18 17 15 20 20 C 1.54392 * 104.91398 * 319.23655 * 19 18 17 21 21 C 1.53003 * 112.67540 * 147.20076 * 20 19 18 22 22 C 1.48501 * 111.00145 * 296.61825 * 13 2 1 23 23 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46467 * 300.00072 * 1 2 3 25 25 H 1.08994 * 109.47065 * 59.99819 * 1 2 3 26 26 H 1.08997 * 109.47316 * 305.57820 * 4 2 1 27 27 H 1.08993 * 109.46778 * 185.57599 * 4 2 1 28 28 H 0.97009 * 119.99910 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.38300 * 278.15278 * 14 13 2 30 30 H 1.09000 * 110.38348 * 40.51201 * 14 13 2 31 31 H 1.09002 * 110.40345 * 328.21821 * 17 15 14 32 32 H 1.08999 * 110.16634 * 206.13508 * 17 15 14 33 33 H 1.08998 * 110.34398 * 200.38008 * 19 18 17 34 34 H 1.08994 * 110.44142 * 78.14883 * 19 18 17 35 35 H 1.09002 * 109.46855 * 182.52465 * 21 20 19 36 36 H 1.09000 * 109.47259 * 302.52300 * 21 20 19 37 37 H 1.08997 * 109.47258 * 62.52445 * 21 20 19 38 38 H 1.09001 * 110.38379 * 319.48924 * 22 13 2 39 39 H 1.09000 * 110.38332 * 81.73766 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.6535 0.0643 -2.4758 6 1 1.0347 0.9443 -2.3807 7 6 2.0899 -0.3404 -3.7196 8 7 2.8437 -1.4117 -3.8354 9 14 1.6114 0.6339 -5.2399 10 1 0.7664 1.7884 -4.8422 11 1 2.8371 1.1281 -5.9171 12 1 0.8509 -0.2401 -6.1687 13 7 2.0197 -0.6925 1.1994 14 6 3.5039 -0.6867 1.2487 15 6 3.8485 -0.9380 2.7312 16 1 4.1125 -1.9747 2.9403 17 6 4.9467 0.0773 3.1736 18 8 4.2242 1.2519 3.6017 19 6 3.0834 0.7513 4.3316 20 6 2.5930 -0.4650 3.5168 21 6 1.9957 -1.5635 4.3986 22 6 1.6114 0.0264 2.4330 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.5974 -1.7161 -1.3006 27 1 3.1253 -0.8086 -1.2007 28 1 3.1505 -1.6967 -4.7104 29 1 3.9076 -1.4839 0.6246 30 1 3.8906 0.2805 0.9278 31 1 5.6006 0.3189 2.3357 32 1 5.5268 -0.3330 4.0002 33 1 2.3040 1.5114 4.3843 34 1 3.3788 0.4420 5.3341 35 1 1.7087 -2.4120 3.7774 36 1 2.7360 -1.8838 5.1316 37 1 1.1168 -1.1773 4.9147 38 1 1.7072 1.1033 2.2941 39 1 0.5869 -0.2314 2.7012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595761625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:54 Heat of formation + Delta-G solvation = -50.787252 kcal Electronic energy + Delta-G solvation = -18114.271686 eV Core-core repulsion = 15442.274038 eV Total energy + Delta-G solvation = -2671.997648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.50909 -37.06073 -34.24173 -32.49361 -31.36360 -29.66660 -27.17133 -26.42920 -25.61461 -24.03870 -22.55667 -21.10691 -19.15690 -19.02516 -16.53558 -16.02442 -15.58732 -15.17585 -14.85190 -14.54828 -14.13321 -13.77688 -13.15146 -12.96708 -12.76949 -12.43850 -12.09821 -11.90933 -11.62624 -11.41191 -11.14113 -10.93485 -10.88012 -10.77792 -10.64076 -10.49613 -10.42134 -10.31207 -9.88091 -9.65387 -9.13609 -9.04287 -8.32849 -7.81473 -5.98220 -3.99593 3.31934 3.39477 3.43363 3.98364 4.38302 4.42960 4.55590 4.69136 5.04580 5.05695 5.18196 5.28994 5.37957 5.50713 5.54776 5.61299 5.67169 5.78756 5.82269 5.94745 6.02610 6.04239 6.10033 6.12916 6.28492 6.36168 6.36925 6.45495 6.67641 6.82275 6.91234 7.11494 7.46444 7.55502 7.78368 7.89073 8.09264 8.46215 9.06966 9.63665 11.13303 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.037694 B = 0.005862 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.645357 B = 4775.319795 C = 4988.046225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.074 3.926 3 H 0.030 0.970 4 C 0.033 3.967 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.504 5.504 14 C 0.047 3.953 15 C -0.118 4.118 16 H 0.098 0.902 17 C 0.048 3.952 18 O -0.373 6.373 19 C 0.053 3.947 20 C -0.098 4.098 21 C -0.124 4.124 22 C 0.045 3.955 23 H 0.053 0.947 24 H 0.030 0.970 25 H 0.065 0.935 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.259 0.741 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 1.091 16.207 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.033 4.033 3 H 0.048 0.952 4 C -0.004 4.004 5 C -0.555 4.555 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.228 5.228 14 C -0.082 4.082 15 C -0.138 4.138 16 H 0.116 0.884 17 C -0.029 4.029 18 O -0.292 6.292 19 C -0.024 4.024 20 C -0.099 4.099 21 C -0.181 4.181 22 C -0.083 4.083 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.577 0.685 15.986 16.011 hybrid contribution 0.066 1.116 -0.941 1.462 sum 0.644 1.801 15.045 15.166 Atomic orbital electron populations 1.21709 0.95353 1.01467 1.00050 1.22035 0.95096 0.95469 0.90729 0.95239 1.19126 0.96460 0.95656 0.89165 1.21257 1.31413 1.11285 0.91529 0.92623 1.24992 0.95201 0.95149 0.99022 1.69981 1.35551 1.24164 1.23682 0.86568 0.78262 0.80119 0.83258 1.19784 1.21083 1.21022 1.65491 1.07153 1.48423 1.01710 1.23029 0.89890 1.01277 0.93957 1.23647 0.94090 0.99667 0.96355 0.88383 1.23761 0.94354 0.85664 0.99160 1.89118 1.38607 1.28515 1.72911 1.23494 0.88815 0.95621 0.94441 1.22656 0.96095 0.95428 0.95709 1.21569 1.00064 0.97920 0.98546 1.23123 0.98304 0.96389 0.90528 0.92739 0.95139 0.91636 0.96158 0.96147 0.93117 0.89752 0.93478 0.88849 0.92575 0.89270 0.92502 0.91317 0.92813 0.92536 0.93974 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.94 37.16 0.33 -2.18 16 2 C 0.07 1.60 1.86 -67.71 -0.13 1.47 16 3 H 0.03 0.67 7.98 -51.93 -0.41 0.26 16 4 C 0.03 0.87 4.45 -27.88 -0.12 0.75 16 5 C -0.52 -14.57 8.49 -34.44 -0.29 -14.87 16 6 H 0.06 1.54 6.93 -52.49 -0.36 1.17 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.50 -9.38 5.20 -222.27 -1.15 -10.53 16 14 C 0.05 0.81 4.87 -2.28 -0.01 0.80 16 15 C -0.12 -1.61 3.93 -87.06 -0.34 -1.95 16 16 H 0.10 1.21 7.97 -51.92 -0.41 0.80 16 17 C 0.05 0.61 6.91 38.75 0.27 0.87 16 18 O -0.37 -5.46 11.65 -35.23 -0.41 -5.87 16 19 C 0.05 0.64 6.45 37.89 0.24 0.89 16 20 C -0.10 -1.25 1.08 -151.80 -0.16 -1.42 16 21 C -0.12 -1.31 8.76 37.16 0.33 -0.98 16 22 C 0.04 0.69 4.57 -2.28 -0.01 0.68 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.03 0.51 7.02 -51.93 -0.36 0.15 16 25 H 0.06 1.35 6.89 -51.93 -0.36 0.99 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.56 6.69 -51.93 -0.35 0.22 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.08 1.58 7.52 -51.93 -0.39 1.19 16 30 H 0.05 0.89 7.39 -51.93 -0.38 0.50 16 31 H 0.09 1.18 7.78 -51.93 -0.40 0.77 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.01 7.75 -51.93 -0.40 0.60 16 34 H 0.06 0.58 7.99 -51.93 -0.42 0.16 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.69 7.37 -51.93 -0.38 0.31 16 39 H 0.08 1.10 7.43 -51.93 -0.39 0.72 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -30.48 300.63 -8.01 -38.49 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.70 Total: -2.76 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 0.00 Total: -14.39 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.42 Total: -36.76 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.41 Total: -5.87 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.48 -8.01 -38.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595761625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.297 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds