Wall clock time and date at job start Mon Mar 30 2020 03:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.49567 * 2 1 4 4 C 1.53097 * 109.49401 * 239.94415 * 2 1 3 5 5 O 1.43093 * 109.21731 * 182.82429 * 4 2 1 6 6 C 1.42628 * 113.75593 * 57.99259 * 5 4 2 7 7 C 1.53988 * 109.79055 * 63.41327 * 6 5 4 8 8 C 1.54947 * 104.12008 * 95.91081 * 7 6 5 9 9 C 1.54913 * 102.78075 * 37.70797 * 8 7 6 10 10 C 1.53569 * 110.06214 * 180.82010 * 6 5 4 11 11 C 1.52742 * 110.23827 * 302.37320 * 6 5 4 12 12 N 1.47015 * 109.51292 * 120.06011 * 2 1 3 13 13 C 1.46902 * 110.99951 * 302.65890 * 12 2 1 14 14 C 1.50699 * 109.47076 * 167.49553 * 13 12 2 15 15 H 1.08005 * 120.00304 * 1.83414 * 14 13 12 16 16 C 1.37875 * 119.99884 * 181.82784 * 14 13 12 17 17 N 1.31510 * 119.99996 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99911 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47169 * 59.99933 * 18 16 14 20 20 H 1.48502 * 109.47257 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47264 * 300.00415 * 18 16 14 22 22 H 1.09003 * 109.47253 * 186.47966 * 1 2 3 23 23 H 1.08995 * 109.47336 * 306.48281 * 1 2 3 24 24 H 1.08999 * 109.46596 * 66.48376 * 1 2 3 25 25 H 1.08997 * 109.51462 * 302.74443 * 4 2 1 26 26 H 1.09002 * 109.51246 * 62.90595 * 4 2 1 27 27 H 1.08998 * 110.49911 * 214.57643 * 7 6 5 28 28 H 1.09001 * 110.50047 * 337.25607 * 7 6 5 29 29 H 1.08999 * 110.75542 * 279.38084 * 8 7 6 30 30 H 1.09006 * 110.90601 * 156.09806 * 8 7 6 31 31 H 1.09001 * 110.48402 * 203.54099 * 9 8 7 32 32 H 1.09001 * 110.48932 * 80.90595 * 9 8 7 33 33 H 1.09000 * 110.05166 * 0.02562 * 10 6 5 34 34 H 1.09003 * 110.05090 * 121.50577 * 10 6 5 35 35 H 1.09001 * 109.50609 * 295.90467 * 11 6 5 36 36 H 1.09004 * 109.50647 * 175.78561 * 11 6 5 37 37 H 1.08994 * 109.46846 * 287.49343 * 13 12 2 38 38 H 1.08997 * 109.47075 * 47.49749 * 13 12 2 39 39 H 0.97007 * 119.99937 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0409 -0.7228 -1.2492 5 8 3.4702 -0.7773 -1.2103 6 6 3.9891 -1.4284 -0.0523 7 6 3.5488 -2.9040 -0.0425 8 6 4.7476 -3.6604 -0.6681 9 6 5.9695 -2.8989 -0.0963 10 6 5.5244 -1.4210 -0.0872 11 6 3.4913 -0.7325 1.2129 12 7 2.0210 -0.6941 1.1993 13 6 1.4993 -0.0672 2.4211 14 6 1.7622 -0.9685 3.5999 15 1 2.2926 -1.8990 3.4605 16 6 1.3256 -0.6053 4.8562 17 7 0.6795 0.5274 5.0259 18 14 1.6521 -1.7223 6.3175 19 1 3.1166 -1.9032 6.4849 20 1 1.0861 -1.1088 7.5458 21 1 1.0139 -3.0426 6.0837 22 1 -0.3634 -1.0211 0.1160 23 1 -0.3634 0.6110 0.8262 24 1 -0.3632 0.4101 -0.9423 25 1 1.6385 -1.7355 -1.2740 26 1 1.7212 -0.1812 -2.1395 27 1 3.3739 -3.2433 0.9784 28 1 2.6535 -3.0392 -0.6494 29 1 4.7234 -3.5906 -1.7556 30 1 4.7588 -4.7029 -0.3497 31 1 6.8379 -3.0317 -0.7415 32 1 6.1901 -3.2370 0.9162 33 1 5.8753 -0.9193 -0.9891 34 1 5.9159 -0.9181 0.7971 35 1 3.8815 0.2847 1.2464 36 1 3.8329 -1.2829 2.0896 37 1 1.9954 0.8905 2.5783 38 1 0.4260 0.0922 2.3178 39 1 0.3727 0.7831 5.9099 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595815799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:32 Heat of formation + Delta-G solvation = -71.649562 kcal Electronic energy + Delta-G solvation = -18464.210988 eV Core-core repulsion = 15791.308682 eV Total energy + Delta-G solvation = -2672.902305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38084 -37.99480 -36.50104 -34.69880 -32.99182 -30.24605 -29.75826 -28.26413 -27.04739 -25.00911 -23.79673 -21.96924 -21.14941 -19.96352 -18.58778 -17.51660 -17.20728 -16.59883 -16.38142 -16.00936 -15.33810 -15.10518 -14.89558 -14.43747 -14.12496 -13.95584 -13.77117 -13.04787 -12.88342 -12.78637 -12.60545 -12.57977 -12.35562 -12.19104 -12.05838 -12.02079 -11.86782 -11.64707 -11.38183 -11.29734 -11.09135 -10.63525 -10.28261 -9.09863 -8.22212 -6.32141 1.38808 1.41971 1.49880 2.37889 2.81072 3.06889 3.14460 3.67038 3.76627 3.92499 3.93026 4.13429 4.23022 4.28295 4.44954 4.55600 4.59470 4.67009 4.71592 4.76671 4.87147 4.89264 4.93115 4.99010 5.02914 5.07676 5.18165 5.20959 5.23397 5.27632 5.31468 5.42820 5.52289 5.62647 6.02509 6.24964 6.34192 6.56630 6.82398 7.36998 8.88807 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.008375 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.383476 B = 3342.549113 C = 4173.709829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.036 3.964 3 H 0.018 0.982 4 C 0.073 3.927 5 O -0.386 6.386 6 C 0.117 3.883 7 C -0.133 4.133 8 C -0.116 4.116 9 C -0.116 4.116 10 C -0.112 4.112 11 C 0.048 3.952 12 N -0.527 5.527 13 C 0.204 3.796 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.267 1.267 22 H 0.061 0.939 23 H 0.037 0.963 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.005 0.995 36 H 0.072 0.928 37 H -0.051 1.051 38 H 0.023 0.977 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 -6.270 -12.473 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 H 0.036 0.964 4 C -0.003 4.003 5 O -0.305 6.305 6 C 0.077 3.923 7 C -0.170 4.170 8 C -0.153 4.153 9 C -0.154 4.154 10 C -0.150 4.150 11 C -0.080 4.080 12 N -0.252 5.252 13 C 0.078 3.922 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.196 4.196 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.192 1.192 22 H 0.080 0.920 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.137 0.863 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.090 0.910 37 H -0.034 1.034 38 H 0.041 0.959 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.562 -6.562 -12.503 15.571 hybrid contribution -0.164 0.997 1.546 1.847 sum 6.398 -5.565 -10.957 13.855 Atomic orbital electron populations 1.21709 0.92944 1.02368 1.02006 1.22402 0.97229 0.95217 0.92437 0.96435 1.22819 0.80474 1.00554 0.96491 1.87877 1.21076 1.79091 1.42496 1.22076 0.94690 0.92058 0.83457 1.22725 0.99134 0.93901 1.01262 1.22484 0.93458 0.99071 1.00317 1.22361 0.98406 0.92801 1.01784 1.22135 0.90912 0.99066 1.02838 1.22632 0.88733 0.97752 0.98917 1.62393 1.07557 1.53051 1.02245 1.19481 0.94531 0.91117 0.87041 1.21390 1.36198 1.05867 0.92487 0.92049 1.25907 0.94870 0.96799 1.02046 1.70081 1.39608 1.23903 1.23948 0.85457 0.78796 0.78836 0.77685 1.19281 1.20823 1.19152 0.92024 0.94426 0.89302 0.91598 0.86265 0.92109 0.91356 0.90840 0.90347 0.89354 0.91307 0.90016 0.91252 0.97661 0.90950 1.03361 0.95947 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.71 71.98 0.63 -3.89 16 2 C 0.04 1.36 2.58 44.92 0.12 1.48 16 3 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 4 C 0.07 2.22 6.00 72.01 0.43 2.65 16 5 O -0.39 -12.78 10.20 -148.98 -1.52 -14.30 16 6 C 0.12 3.84 0.98 -10.35 -0.01 3.83 16 7 C -0.13 -3.99 5.62 31.59 0.18 -3.81 16 8 C -0.12 -2.63 6.91 31.91 0.22 -2.41 16 9 C -0.12 -2.52 6.84 31.70 0.22 -2.31 16 10 C -0.11 -3.02 6.27 31.24 0.20 -2.82 16 11 C 0.05 2.01 3.78 86.18 0.33 2.34 16 12 N -0.53 -23.62 4.25 -875.09 -3.72 -27.34 16 13 C 0.20 11.20 4.53 85.56 0.39 11.59 16 14 C -0.52 -29.99 8.56 25.60 0.22 -29.77 16 15 H 0.06 3.45 7.25 -2.91 -0.02 3.43 16 16 C 0.00 0.10 5.46 84.65 0.46 0.56 16 17 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 18 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.04 1.47 6.48 -2.39 -0.02 1.45 16 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.07 1.93 6.24 -2.39 -0.01 1.91 16 26 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.06 2.07 7.77 -2.39 -0.02 2.05 16 28 H 0.07 2.06 5.98 -2.39 -0.01 2.05 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 2.08 7.95 -2.39 -0.02 2.06 16 34 H 0.07 1.91 7.67 -2.39 -0.02 1.90 16 35 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.07 3.22 6.90 -2.38 -0.02 3.20 16 37 H -0.05 -3.13 8.09 -2.39 -0.02 -3.15 16 38 H 0.02 1.30 5.78 -2.39 -0.01 1.29 16 39 H 0.26 15.18 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -65.33 296.51 1.44 -63.89 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.00 Total: 10.39 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 3.37 Total: -22.56 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -3.44 Total: -84.08 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.52 Total: -14.30 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -65.33 1.44 -63.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595815799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.758 kcal (2) G-P(sol) polarization free energy of solvation -65.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds