Wall clock time and date at job start Mon Mar 30 2020 03:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47572 * 2 1 4 4 C 1.53009 * 109.47099 * 240.00228 * 2 1 3 5 5 C 1.50699 * 109.47207 * 175.73824 * 4 2 1 6 6 H 1.08003 * 119.99762 * 5.02837 * 5 4 2 7 7 C 1.37877 * 120.00030 * 185.02225 * 5 4 2 8 8 N 1.31509 * 120.00140 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99999 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47057 * 89.99625 * 9 7 5 11 11 H 1.48494 * 109.47168 * 209.99931 * 9 7 5 12 12 H 1.48507 * 109.47223 * 329.99959 * 9 7 5 13 13 N 1.46906 * 109.47302 * 120.00515 * 2 1 3 14 14 C 1.47228 * 110.99767 * 57.63314 * 13 2 1 15 15 C 1.52873 * 108.07586 * 170.67140 * 14 13 2 16 16 C 1.50947 * 111.44954 * 58.32213 * 15 14 13 17 17 H 1.09005 * 109.64877 * 188.14974 * 16 15 14 18 18 C 1.53956 * 112.73427 * 66.12636 * 16 15 14 19 19 O 1.44009 * 104.47614 * 200.59598 * 18 16 15 20 20 C 1.43357 * 109.97817 * 23.59610 * 19 18 16 21 21 C 1.54229 * 113.39622 * 311.07303 * 16 15 14 22 22 H 1.08997 * 112.37979 * 277.78822 * 21 16 15 23 23 C 1.46416 * 111.03319 * 294.97329 * 13 2 1 24 24 H 1.09007 * 109.47113 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47063 * 299.99389 * 1 2 3 26 26 H 1.08996 * 109.47254 * 59.99516 * 1 2 3 27 27 H 1.08998 * 109.46757 * 295.73949 * 4 2 1 28 28 H 1.08997 * 109.46610 * 55.73462 * 4 2 1 29 29 H 0.96997 * 120.00292 * 180.02562 * 8 7 5 30 30 H 1.08991 * 109.75015 * 51.01186 * 14 13 2 31 31 H 1.08998 * 109.74602 * 290.32900 * 14 13 2 32 32 H 1.08997 * 109.08001 * 178.82730 * 15 14 13 33 33 H 1.08997 * 109.08184 * 297.81205 * 15 14 13 34 34 H 1.09001 * 110.43384 * 319.34971 * 18 16 15 35 35 H 1.08997 * 110.43316 * 81.84451 * 18 16 15 36 36 H 1.09010 * 109.86661 * 240.72787 * 20 19 18 37 37 H 1.09001 * 109.87322 * 119.60735 * 20 19 18 38 38 H 1.09001 * 109.09447 * 66.71527 * 23 13 2 39 39 H 1.09000 * 109.08461 * 307.59369 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5433 -0.6305 -1.3033 6 1 4.0869 -0.1820 -0.4848 7 6 4.2247 -1.1200 -2.3974 8 7 5.5366 -1.0412 -2.4443 9 14 3.2844 -1.8951 -3.8132 10 1 2.9379 -0.8491 -4.8088 11 1 4.1281 -2.9327 -4.4586 12 1 2.0395 -2.5196 -3.2977 13 7 2.0197 -0.6926 1.1994 14 6 1.5019 -2.0694 1.2620 15 6 2.2283 -2.7985 2.3924 16 6 2.0339 -2.0983 3.7154 17 1 2.6759 -2.5542 4.4692 18 6 0.5731 -2.1371 4.2000 19 8 0.4788 -1.0552 5.1459 20 6 1.4948 -0.0801 4.8775 21 6 2.3056 -0.5815 3.6514 22 1 3.3672 -0.3465 3.7280 23 6 1.6509 0.0362 2.4145 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.7403 -1.7686 -1.2120 28 1 1.6156 -0.2533 -2.1376 29 1 6.0159 -1.3853 -3.2141 30 1 1.6897 -2.5769 0.3159 31 1 0.4309 -2.0512 1.4639 32 1 1.8419 -3.8150 2.4669 33 1 3.2932 -2.8391 2.1637 34 1 -0.1091 -1.9738 3.3657 35 1 0.3589 -3.0883 4.6873 36 1 2.1521 0.0173 5.7417 37 1 1.0346 0.8813 4.6494 38 1 0.5676 0.0085 2.5321 39 1 1.9734 1.0731 2.3199 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595836982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:48 Heat of formation + Delta-G solvation = -66.563362 kcal Electronic energy + Delta-G solvation = -18408.366118 eV Core-core repulsion = 15735.684367 eV Total energy + Delta-G solvation = -2672.681751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.60936 -38.91945 -35.65687 -34.39455 -32.77410 -31.54079 -29.65033 -28.61209 -25.71337 -24.88982 -24.06917 -22.83004 -20.90806 -19.46384 -18.75630 -17.69330 -16.95410 -16.68536 -16.36332 -15.88037 -15.65491 -15.12260 -14.77215 -14.50118 -14.22002 -14.04216 -13.88583 -13.48545 -13.26269 -13.17205 -12.73435 -12.62835 -12.41010 -12.11708 -11.92796 -11.68192 -11.56424 -11.52242 -11.27430 -11.10885 -10.95523 -10.66096 -10.45288 -8.89543 -8.16778 -6.15725 1.37087 1.38663 1.49455 2.42118 2.88554 3.07137 3.22065 3.49464 3.72938 3.95110 4.08159 4.17879 4.26083 4.27339 4.33899 4.38684 4.48156 4.53767 4.62227 4.68840 4.76834 4.81432 4.88442 4.89594 5.00383 5.06852 5.11775 5.13968 5.20560 5.23666 5.34471 5.40156 5.58345 5.75850 5.99291 6.37392 6.41967 6.55893 6.93647 7.45169 9.00583 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.036894 B = 0.006707 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.757038 B = 4173.834607 C = 4309.084356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 H 0.060 0.940 4 C -0.003 4.003 5 C -0.490 4.490 6 H 0.037 0.963 7 C -0.002 4.002 8 N -0.958 5.958 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.249 1.249 13 N -0.529 5.529 14 C 0.052 3.948 15 C -0.098 4.098 16 C -0.110 4.110 17 H 0.089 0.911 18 C 0.057 3.943 19 O -0.404 6.404 20 C 0.056 3.944 21 C -0.111 4.111 22 H 0.096 0.904 23 C 0.062 3.938 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.260 0.740 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -1.760 12.174 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 H 0.078 0.922 4 C -0.041 4.041 5 C -0.528 4.528 6 H 0.055 0.945 7 C -0.197 4.197 8 N -0.600 5.600 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.173 1.173 13 N -0.253 5.253 14 C -0.075 4.075 15 C -0.136 4.136 16 C -0.129 4.129 17 H 0.107 0.893 18 C -0.019 4.019 19 O -0.324 6.324 20 C -0.021 4.021 21 C -0.130 4.130 22 H 0.114 0.886 23 C -0.067 4.067 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.487 -1.797 12.208 16.859 hybrid contribution -0.280 -0.121 -1.120 1.161 sum -11.768 -1.919 11.088 16.282 Atomic orbital electron populations 1.22417 0.96630 1.02086 1.02316 1.21515 0.92232 0.97207 0.90275 0.92191 1.19639 0.94677 0.95961 0.93810 1.21297 0.91839 1.36685 1.03015 0.94474 1.25933 0.95503 0.96930 1.01337 1.70078 1.08600 1.49770 1.31583 0.85782 0.79331 0.78663 0.79531 1.19599 1.21621 1.17276 1.62258 1.59391 1.02332 1.01302 1.22192 0.96417 0.89839 0.99070 1.20871 1.01070 0.99027 0.92660 1.21953 0.97390 0.95395 0.98169 0.89288 1.23394 0.95587 0.90809 0.92065 1.88410 1.54898 1.34016 1.55056 1.23470 0.89588 0.92060 0.96959 1.22675 1.00727 0.95330 0.94245 0.88618 1.22083 0.97351 0.97655 0.89564 0.92394 0.91994 0.91686 0.96189 0.96315 0.93083 0.91864 0.93822 0.89630 0.92750 0.92496 0.88116 0.89961 0.90662 0.94474 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.21 8.46 71.98 0.61 -4.60 16 2 C 0.10 3.66 2.30 44.92 0.10 3.76 16 3 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 4 C 0.00 -0.16 3.37 29.85 0.10 -0.06 16 5 C -0.49 -28.06 9.38 25.60 0.24 -27.82 16 6 H 0.04 2.39 7.97 -2.91 -0.02 2.37 16 7 C 0.00 -0.13 5.47 84.66 0.46 0.34 16 8 N -0.96 -61.05 13.96 21.45 0.30 -60.75 16 9 Si 0.94 44.71 27.37 68.60 1.88 46.59 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.25 -10.91 6.69 99.48 0.67 -10.24 16 13 N -0.53 -19.12 4.35 -871.69 -3.79 -22.91 16 14 C 0.05 1.68 4.40 86.20 0.38 2.06 16 15 C -0.10 -2.72 5.55 29.88 0.17 -2.56 16 16 C -0.11 -2.65 2.98 -10.72 -0.03 -2.68 16 17 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 18 C 0.06 1.27 6.75 72.30 0.49 1.76 16 19 O -0.40 -10.11 11.38 -148.98 -1.69 -11.81 16 20 C 0.06 1.24 7.09 72.78 0.52 1.75 16 21 C -0.11 -2.84 3.80 -9.59 -0.04 -2.88 16 22 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 23 C 0.06 1.80 3.76 86.39 0.32 2.13 16 24 H 0.06 1.65 6.59 -2.38 -0.02 1.64 16 25 H 0.06 1.63 6.67 -2.39 -0.02 1.61 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.02 0.91 5.49 -2.39 -0.01 0.90 16 28 H 0.02 0.84 7.29 -2.39 -0.02 0.82 16 29 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.06 2.34 5.91 -2.39 -0.01 2.33 16 31 H 0.04 1.24 5.41 -2.39 -0.01 1.22 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.31 6.19 -2.39 -0.01 1.29 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.08 1.56 7.73 -2.39 -0.02 1.54 16 38 H 0.04 1.03 5.73 -2.39 -0.01 1.01 16 39 H 0.07 1.96 8.02 -2.39 -0.02 1.94 16 Total: -1.00 -66.33 287.61 0.98 -65.34 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.98 Total: 12.34 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 3.32 Total: -28.80 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -3.50 Total: -83.67 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.69 Total: -11.81 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -66.33 0.98 -65.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595836982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.221 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds